Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0010925

Physical Location & Seq

Genomic Coordinates Forward (+)

67196224 .. 67198156

Gene Structure 1933 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG461800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGCTGGTGAGTACAACAAAAGCCACGAGTACGAGACCAAGGCCGAGGAGGGCGGTCCAGTTGAGACCCAGGATCGTGGGTTATTTGATTTCTTGGGTAAGAAGAAGGAGGAGGAGAAGCCTATTCATCCTCAACAGGAGGAGGTGATTGTCACCGAGTTCGAGAAAGTCAAGGTGTCTGAGCCTGAGCCAGCTTATGTAGACTACAGCAAACCTGCAGAGCATGGTTATCATCATGAGGAACATAAGGAGGAGGAGGTGGAGAAGAAGCACGAAACTCTATCCGAGAAGCTTCGCCGATCCGACAGCAGCTCTAGCTCGTCTAGCGACGAGGAAGGAGACGACGAAGAGAAAAAACAGAAGAGGAAGGAGAGGAAGGAGAAGAAGGGACTGAAGGAAAAGATCAAGGGGAAGATCTCCGGCGACAAAGAAGAAGAGAAGAAACACGGCTACGAGCAGGACACTGAGATCCCGGTGGAGAAGTTCCACGAGGAACACGGCCATCCCTACGATCACGGCCCAGTCGTCCACCACCATGAGGAGCCAAAAGTTGAACCAACTGCTGTGTACGGAGAGGAGGAGAAGAAAGAGGACGAGAAGAAGGGTTTCCTTGAGAAGATCAAGGACAAGCTTCCCGGACACAAGAAGCCAGAGGATGGTCCAGTTGCGTCTCCACCACCGCCGGAGTATGAAAATGTTGAGCCTGCTTATCATGAAGGTGAGGTGAAGGAGAAGAAGGGTTTATTGGAGAAGATCAAGGAGAAGATTCCCGGGTACCATCCCAAGACTGAGGAAGAGAAGGAGAAGGAAAAGGAGAAAGAGAAGCCAACTGGTTCTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001786 GO:0003674 GO:0003779 GO:0005488 GO:0005507 GO:0005515 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005911 GO:0006950 GO:0008092 GO:0008150 GO:0008289 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009506 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009737 GO:0010029 GO:0010033 GO:0010035 GO:0016020 GO:0016151 GO:0019898 GO:0030054 GO:0031210 GO:0031647 GO:0033993 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048580 GO:0050789 GO:0050793 GO:0050821 GO:0050896 GO:0050997 GO:0051239 GO:0055044 GO:0065007 GO:0065008 GO:0070405 GO:0072341 GO:0090559 GO:0097305 GO:1900140 GO:1901700 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dehydrin

Protein Analysis

280

Amino Acids

32.49

Weight (kDa)

5.37

Isoelectric Point (pI)

54.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dehydrin	PF00257	62 - 214	6.2e-16	Dehydrin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20440 AT1G20450 AT1G20450 AT1G76180 AT1G76180
fragaria_vesca	FvH4_2g37690
malus_domestica	MD08G1004500.v1.1 MD15G1003900.v1.1
prunus_persica	Prupe.1G356400_v2.0.a1
pyrus_communis	pycom15g00280
rosa_chinensis	RchiOBHm_Chr6g0304041
rosa_laevigata	RLG00000011023
rosa_multiflora	Rmu_sc0003805.1_g000015
rosa_roxburghii	Rroxscaffold_7G00164160
rosa_rugosa	Rorug06G0327200
rosa_samantha	Rh6AG441000 Rh6BG461800 Rh6CG453200 Rh6DG440500
rosa_wichuraiana	Rw6G038210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	223
Acc65I	GGTACC	1 cut(s)	774
AccB1I	GGYRCC	1 cut(s)	774
AccB7I	CCANNNNNTGG	1 cut(s)	656
AccI	GTMKAC	1 cut(s)	201
AciI	CCGC	2 cut(s)	54, 680
AclWI	GGATC	3 cut(s)	81, 294, 463
AcoI	YGGCCR	1 cut(s)	499
AcuI	CTGAAG	1 cut(s)	413
AfaI	GTAC	4 cut(s)	14, 32, 569, 776
AfiI	CCNNNNNNNGG	2 cut(s)	538, 656
AgsI	TTSAA	1 cut(s)	554
AjnI	CCWGG	1 cut(s)	69
AjuI	GAANNNNNNNTTGG	2 cut(s)	728, 760
AluBI	AGCT	5 cut(s)	194, 292, 312, 318, 631
AluI	AGCT	5 cut(s)	194, 292, 312, 318, 631
Alw26I	GTCTC	4 cut(s)	29, 59, 333, 675
AlwI	GGATC	3 cut(s)	81, 294, 463
Ama87I	CYCGRG	1 cut(s)	770
AoxI	GGCC	3 cut(s)	42, 499, 517
ApeKI	GCWGC	1 cut(s)	309
Asp700I	GAANNNNTTC	1 cut(s)	605
Asp718I	GGTACC	1 cut(s)	774
AspS9I	GGNCC	3 cut(s)	56, 518, 659
AsuC2I	CCSGG	4 cut(s)	473, 636, 771, 772
AsuHPI	GGTGA	5 cut(s)	20, 145, 157, 731, 736
AvaI	CYCGRG	1 cut(s)	770
AvaII	GGWCC	2 cut(s)	56, 659
BanI	GGYRCC	1 cut(s)	774
BauI	CACGAG	2 cut(s)	26, 488
BbvI	GCAGC	1 cut(s)	321
BccI	CCATC	3 cut(s)	510, 650, 786
BceAI	ACGGC	3 cut(s)	463, 514, 532
BciT130I	CCWGG	1 cut(s)	71
BcnI	CCSGG	4 cut(s)	473, 636, 771, 772
BcoDI	GTCTC	4 cut(s)	29, 59, 333, 675
BfaI	CTAG	2 cut(s)	315, 324
BfmI	CTRYAG	2 cut(s)	205, 216
BfuAI	ACCTGC	1 cut(s)	223
BglII	AGATCT	1 cut(s)	414
BisI	GCNGC	1 cut(s)	310
BlsI	GCNGC	1 cut(s)	311
Bme1390I	CCNGG	5 cut(s)	71, 473, 636, 771, 772
Bme18I	GGWCC	2 cut(s)	56, 659
BmeT110I	CYCGRG	1 cut(s)	770
BmgT120I	GGNCC	3 cut(s)	56, 518, 659
BmiI	GGNNCC	2 cut(s)	543, 776
BmrFI	CCNGG	5 cut(s)	71, 473, 636, 771, 772
BmrI	ACTGGG	1 cut(s)	515
BmuI	ACTGGG	1 cut(s)	515
Bpu10I	CCTNAGC	1 cut(s)	186
BpuEI	CTTGAG	1 cut(s)	632
BpuMI	CCSGG	4 cut(s)	473, 636, 771, 772
BsaI	GGTCTC	2 cut(s)	29, 59
BsaJI	CCNNGG	4 cut(s)	39, 45, 69, 770
Bsc4I	CCNNNNNNNGG	2 cut(s)	538, 656
Bse1I	ACTGG	4 cut(s)	59, 521, 662, 835
BseBI	CCWGG	1 cut(s)	71
BseDI	CCNNGG	4 cut(s)	39, 45, 69, 770
BseGI	GGATG	4 cut(s)	127, 502, 661, 778
BseLI	CCNNNNNNNGG	2 cut(s)	538, 656
BseMII	CTCAG	4 cut(s)	171, 177, 456, 780
BseNI	ACTGG	4 cut(s)	59, 521, 662, 835
BseRI	GAGGAG	9 cut(s)	62, 125, 128, 155, 266, 269, 554, 590, 593
BseXI	GCAGC	1 cut(s)	321
BshFI	GGCC	3 cut(s)	44, 501, 519
BshNI	GGYRCC	1 cut(s)	774
BsiHKCI	CYCGRG	1 cut(s)	770
BsiSI	CCGG	5 cut(s)	420, 473, 636, 683, 771
BslFI	GGGAC	1 cut(s)	402
BslI	CCNNNNNNNGG	2 cut(s)	538, 656
BsmAI	GTCTC	4 cut(s)	29, 59, 333, 675
BsmBI	CGTCTC	2 cut(s)	333, 675
BsmFI	GGGAC	1 cut(s)	402
BsnI	GGCC	3 cut(s)	44, 501, 519
Bso31I	GGTCTC	2 cut(s)	29, 59
BsoBI	CYCGRG	1 cut(s)	770
Bsp143I	GATC	8 cut(s)	73, 299, 402, 414, 468, 511, 618, 753
BspACI	CCGC	2 cut(s)	54, 680
BspANI	GGCC	3 cut(s)	44, 501, 519
BspCNI	CTCAG	4 cut(s)	172, 178, 457, 781
BspHI	TCATGA	2 cut(s)	235, 712
BspLI	GGNNCC	2 cut(s)	543, 776
BspMAI	CTGCAG	1 cut(s)	220
BspMI	ACCTGC	1 cut(s)	223
BspPI	GGATC	3 cut(s)	81, 294, 463
BspT107I	GGYRCC	1 cut(s)	774
BspTNI	GGTCTC	2 cut(s)	29, 59
BsrI	ACTGG	4 cut(s)	59, 521, 662, 835
BssECI	CCNNGG	4 cut(s)	39, 45, 69, 770
BssMI	GATC	8 cut(s)	73, 299, 402, 414, 468, 511, 618, 753
BssSI	CACGAG	2 cut(s)	26, 488
BssT1I	CCWWGG	1 cut(s)	39
Bst2BI	CACGAG	2 cut(s)	26, 488
Bst2UI	CCWGG	1 cut(s)	71
Bst6I	CTCTTC	4 cut(s)	342, 356, 429, 789
BstC8I	GCNNGC	2 cut(s)	192, 705
BstDEI	CTNAG	4 cut(s)	180, 186, 465, 789
BstF5I	GGATG	4 cut(s)	127, 502, 661, 778
BstKTI	GATC	8 cut(s)	76, 302, 405, 417, 471, 514, 621, 756
BstMAI	GTCTC	4 cut(s)	29, 59, 333, 675
BstMBI	GATC	8 cut(s)	73, 299, 402, 414, 468, 511, 618, 753
BstMWI	GCNNNNNNNGC	2 cut(s)	315, 324
BstNI	CCWGG	1 cut(s)	71
BstSCI	CCNGG	5 cut(s)	69, 471, 634, 769, 770
BstSFI	CTRYAG	2 cut(s)	205, 216
BstV1I	GCAGC	1 cut(s)	321
BstX2I	RGATCY	2 cut(s)	414, 468
BstXI	CCANNNNNNTGG	1 cut(s)	77
BstYI	RGATCY	2 cut(s)	414, 468
BsuRI	GGCC	3 cut(s)	44, 501, 519
BtsCI	GGATG	4 cut(s)	127, 502, 661, 778
BtsIMutI	CAGTG	1 cut(s)	462
BveI	ACCTGC	1 cut(s)	223
Cac8I	GCNNGC	2 cut(s)	192, 705
CciI	TCATGA	2 cut(s)	235, 712
Cfr13I	GGNCC	3 cut(s)	56, 518, 659
Cfr9I	CCCGGG	1 cut(s)	770
CseI	GACGC	1 cut(s)	657
Csp6I	GTAC	4 cut(s)	13, 31, 568, 775
CviAII	CATG	4 cut(s)	224, 236, 536, 713
CviQI	GTAC	4 cut(s)	13, 31, 568, 775
DdeI	CTNAG	4 cut(s)	180, 186, 465, 789
DpnI	GATC	8 cut(s)	75, 301, 404, 416, 470, 513, 620, 755
DpnII	GATC	8 cut(s)	73, 299, 402, 414, 468, 511, 618, 753
EaeI	YGGCCR	1 cut(s)	499
Eam1104I	CTCTTC	4 cut(s)	342, 356, 429, 789
EarI	CTCTTC	4 cut(s)	342, 356, 429, 789
Eco130I	CCWWGG	1 cut(s)	39
Eco31I	GGTCTC	2 cut(s)	29, 59
Eco47I	GGWCC	2 cut(s)	56, 659
Eco57I	CTGAAG	1 cut(s)	413
Eco88I	CYCGRG	1 cut(s)	770
EcoRII	CCWGG	1 cut(s)	69
EcoT14I	CCWWGG	1 cut(s)	39
ErhI	CCWWGG	1 cut(s)	39
Esp3I	CGTCTC	2 cut(s)	333, 675
FaeI	CATG	4 cut(s)	227, 239, 539, 716
FaiI	YATR	7 cut(s)	198, 225, 237, 246, 537, 690, 714
FaqI	GGGAC	1 cut(s)	402
FatI	CATG	4 cut(s)	223, 235, 535, 712
FblI	GTMKAC	1 cut(s)	201
Fnu4HI	GCNGC	1 cut(s)	310
FokI	GGATG	4 cut(s)	114, 489, 668, 765
Fsp4HI	GCNGC	1 cut(s)	310
FspBI	CTAG	2 cut(s)	315, 324
GluI	GCNGC	1 cut(s)	310
HaeIII	GGCC	3 cut(s)	44, 501, 519
HapII	CCGG	5 cut(s)	420, 473, 636, 683, 771
HgaI	GACGC	1 cut(s)	657
Hin1II	CATG	4 cut(s)	227, 239, 539, 716
HindIII	AAGCTT	2 cut(s)	290, 629
HinfI	GANTC	1 cut(s)	766
HpaII	CCGG	5 cut(s)	420, 473, 636, 683, 771
HphI	GGTGA	5 cut(s)	20, 145, 157, 731, 736
Hpy166II	GTNNAC	3 cut(s)	202, 529, 568
Hpy188I	TCNGA	3 cut(s)	181, 286, 304
Hpy188III	TCNNGA	3 cut(s)	163, 236, 713
Hpy8I	GTNNAC	3 cut(s)	202, 529, 568
Hpy99I	CGWCG	2 cut(s)	332, 347
HpyCH4V	TGCA	1 cut(s)	218
HpyF10VI	GCNNNNNNNGC	2 cut(s)	315, 324
HpyF3I	CTNAG	4 cut(s)	180, 186, 465, 789
Hsp92II	CATG	4 cut(s)	227, 239, 539, 716
KpnI	GGTACC	1 cut(s)	778
Kzo9I	GATC	8 cut(s)	73, 299, 402, 414, 468, 511, 618, 753
LmnI	GCTCC	1 cut(s)	541
Lsp1109I	GCAGC	1 cut(s)	321
MaeI	CTAG	2 cut(s)	315, 324
MaeIII	GTNAC	1 cut(s)	151
MalI	GATC	8 cut(s)	75, 301, 404, 416, 470, 513, 620, 755
MboI	GATC	8 cut(s)	73, 299, 402, 414, 468, 511, 618, 753
MflI	RGATCY	2 cut(s)	414, 468
MmeI	TCCRAC	1 cut(s)	327
MroXI	GAANNNNTTC	1 cut(s)	605
MslI	CAYNNNNRTG	2 cut(s)	534, 717
MspI	CCGG	5 cut(s)	420, 473, 636, 683, 771
MspR9I	CCNGG	5 cut(s)	71, 473, 636, 771, 772
MvaI	CCWGG	1 cut(s)	71
MwoI	GCNNNNNNNGC	2 cut(s)	315, 324
NciI	CCSGG	4 cut(s)	473, 636, 771, 772
NdeII	GATC	8 cut(s)	73, 299, 402, 414, 468, 511, 618, 753
NlaIII	CATG	4 cut(s)	227, 239, 539, 716
NlaIV	GGNNCC	2 cut(s)	543, 776
NmeAIII	GCCGAG	1 cut(s)	70
NmuCI	GTSAC	1 cut(s)	151
PagI	TCATGA	2 cut(s)	235, 712
PcsI	WCGNNNNNNNCGW	1 cut(s)	522
PdmI	GAANNNNTTC	1 cut(s)	605
PfeI	GAWTC	1 cut(s)	766
PflMI	CCANNNNNTGG	1 cut(s)	656
PfoI	TCCNGGA	1 cut(s)	634
PkrI	GCNGC	1 cut(s)	311
Psp6I	CCWGG	1 cut(s)	69
PspGI	CCWGG	1 cut(s)	69
PspN4I	GGNNCC	2 cut(s)	543, 776
PspPI	GGNCC	3 cut(s)	56, 518, 659
PstI	CTGCAG	1 cut(s)	220
PsuI	RGATCY	2 cut(s)	414, 468
RsaI	GTAC	4 cut(s)	14, 32, 569, 776
RsaNI	GTAC	4 cut(s)	13, 31, 568, 775
RseI	CAYNNNNRTG	2 cut(s)	534, 717
SatI	GCNGC	1 cut(s)	310
Sau3AI	GATC	8 cut(s)	73, 299, 402, 414, 468, 511, 618, 753
Sau96I	GGNCC	3 cut(s)	56, 518, 659
ScrFI	CCNGG	5 cut(s)	71, 473, 636, 771, 772
SfcI	CTRYAG	2 cut(s)	205, 216
SinI	GGWCC	2 cut(s)	56, 659
SmaI	CCCGGG	1 cut(s)	772
SmiMI	CAYNNNNRTG	2 cut(s)	534, 717
SmlI	CTYRAG	1 cut(s)	611
SmoI	CTYRAG	1 cut(s)	611
SsiI	CCGC	2 cut(s)	54, 680
SspMI	CTAG	2 cut(s)	315, 324
StyD4I	CCNGG	5 cut(s)	69, 471, 634, 769, 770
StyI	CCWWGG	1 cut(s)	39
TaqI	TCGA	1 cut(s)	162
TatI	WGTACW	1 cut(s)	12
TfiI	GAWTC	1 cut(s)	766
TscAI	CASTG	1 cut(s)	469
TseFI	GTSAC	1 cut(s)	151
TseI	GCWGC	1 cut(s)	309
Tsp45I	GTSAC	1 cut(s)	151
TspDTI	ATGAA	3 cut(s)	116, 705, 729
TspGWI	ACGGA	1 cut(s)	585
TspMI	CCCGGG	1 cut(s)	770
TspRI	CASTG	1 cut(s)	469
Van91I	CCANNNNNTGG	1 cut(s)	656
VpaK11BI	GGWCC	2 cut(s)	56, 659
XmaI	CCCGGG	1 cut(s)	770
XmiI	GTMKAC	1 cut(s)	201
XmnI	GAANNNNTTC	1 cut(s)	605
XspI	CTAG	2 cut(s)	315, 324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.