Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010925

Physical Location & Seq

Genomic Coordinates Reverse (-)

28586663 .. 28587931

Gene Structure 1269 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G76180.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGCTGAGGAAATCAAGAATGTTCCTGAACAGGAGGTGCCAAAGGTAGCAACAGAGGAATCATCGGCAGAGGTTACAGATCGTGGATTGTTCGATTTCTTGGGAAAGAAGAAAGACGAAACAAAACCAGAGGAGACTCCGATCGCTTCAGAGTTTGAGCAGAAGGTTCATATTTCAGAGCCGGAGCCAGAGGTTAAACACGAAAGTCTTCTTGAAAAGCTTCACCGAAGCGACAGTTCTTCTAGCTCCTCAAGTGAGGAAGAAGGTTCAGATGGTGAGAAGAGGAAGAAGAAGAAGGAGAAGAAGAAGCCAACTACTGAAGTTGAGGTAAAGGAGGAAGAGAAGAAAGGGTTTATGGAGAAGTTGAAAGAGAAGCTTCCTGGACACAAGAAACCTGAAGACGGTTCAGCCGTCGCTGCGGCACCGGTGGTTGTTCCTCCTCCTGTGGAAGAAGCGCATCCAGTGGAGAAGAAAGGGATTCTTGAGAAGATTAAGGAGAAGCTTCCAGGATACCACCCTAAGACCACCGTAGAGGAGGAGAAGAAAGATAAAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001786 GO:0003674 GO:0005488 GO:0005509 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0008150 GO:0008289 GO:0009266 GO:0009269 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009536 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0016020 GO:0019898 GO:0031210 GO:0031647 GO:0033993 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046872 GO:0050821 GO:0050896 GO:0050997 GO:0065007 GO:0065008 GO:0070405 GO:0071944 GO:0072341 GO:0090559 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dehydrin

Protein Analysis

185

Amino Acids

20.79

Weight (kDa)

5.41

Isoelectric Point (pI)

65.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dehydrin	PF00257	115 - 172	1e-12	Dehydrin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20440 AT1G20450 AT1G20450 AT1G76180 AT1G76180
fragaria_vesca	FvH4_2g37690
malus_domestica	MD08G1004500.v1.1 MD15G1003900.v1.1
prunus_persica	Prupe.1G356400_v2.0.a1
pyrus_communis	pycom15g00280
rosa_chinensis	RchiOBHm_Chr6g0304041
rosa_laevigata	RLG00000011023
rosa_multiflora	Rmu_sc0003805.1_g000015
rosa_roxburghii	Rroxscaffold_7G00164160
rosa_rugosa	Rorug06G0327200
rosa_samantha	Rh6AG441000 Rh6BG461800 Rh6CG453200 Rh6DG440500
rosa_wichuraiana	Rw6G038210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	37, 421
AciI	CCGC	1 cut(s)	419
AcuI	CTGAAG	3 cut(s)	132, 339, 417
AfiI	CCNNNNNNNGG	1 cut(s)	401
AgeI	ACCGGT	1 cut(s)	424
AgsI	TTSAA	2 cut(s)	215, 367
AjnI	CCWGG	2 cut(s)	379, 505
AluBI	AGCT	4 cut(s)	220, 246, 376, 502
AluI	AGCT	4 cut(s)	220, 246, 376, 502
Alw26I	GTCTC	1 cut(s)	128
ApeKI	GCWGC	1 cut(s)	416
AsiGI	ACCGGT	1 cut(s)	424
Asp700I	GAANNNNTTC	2 cut(s)	207, 219
AspLEI	GCGC	1 cut(s)	457
AsuHPI	GGTGA	2 cut(s)	215, 287
BanI	GGYRCC	2 cut(s)	37, 421
BbsI	GAAGAC	2 cut(s)	200, 405
BbvCI	CCTCAGC	1 cut(s)	6
BbvI	GCAGC	1 cut(s)	403
BccI	CCATC	1 cut(s)	266
BceAI	ACGGC	1 cut(s)	395
BciT130I	CCWGG	2 cut(s)	381, 507
BciVI	GTATCC	1 cut(s)	503
BcoDI	GTCTC	1 cut(s)	128
BfaI	CTAG	1 cut(s)	243
BfuI	GTATCC	1 cut(s)	503
BisI	GCNGC	2 cut(s)	417, 420
BlsI	GCNGC	2 cut(s)	418, 421
Bme1390I	CCNGG	2 cut(s)	381, 507
BmiI	GGNNCC	3 cut(s)	39, 186, 423
BmrFI	CCNGG	2 cut(s)	381, 507
BmsI	GCATC	1 cut(s)	466
BpiI	GAAGAC	2 cut(s)	200, 405
Bpu10I	CCTNAGC	1 cut(s)	6
BpuEI	CTTGAG	2 cut(s)	235, 503
BsaWI	WCCGGW	1 cut(s)	424
Bsc4I	CCNNNNNNNGG	1 cut(s)	401
Bse118I	RCCGGY	1 cut(s)	424
Bse1I	ACTGG	1 cut(s)	461
BseBI	CCWGG	2 cut(s)	381, 507
BseGI	GGATG	1 cut(s)	457
BseLI	CCNNNNNNNGG	1 cut(s)	401
BseNI	ACTGG	1 cut(s)	461
BseRI	GAGGAG	5 cut(s)	146, 238, 429, 548, 551
BseXI	GCAGC	1 cut(s)	403
Bsh1285I	CGRYCG	1 cut(s)	144
BshNI	GGYRCC	2 cut(s)	37, 421
BshTI	ACCGGT	1 cut(s)	424
BsiEI	CGRYCG	1 cut(s)	144
BsiSI	CCGG	2 cut(s)	182, 425
BslI	CCNNNNNNNGG	1 cut(s)	401
BsmAI	GTCTC	1 cut(s)	128
Bsp143I	GATC	2 cut(s)	79, 141
BspACI	CCGC	1 cut(s)	419
BspLI	GGNNCC	3 cut(s)	39, 186, 423
BspT107I	GGYRCC	2 cut(s)	37, 421
BsrFI	RCCGGY	1 cut(s)	424
BsrI	ACTGG	1 cut(s)	461
BssAI	RCCGGY	1 cut(s)	424
BssMI	GATC	2 cut(s)	79, 141
Bst2UI	CCWGG	2 cut(s)	381, 507
Bst4CI	ACNGT	3 cut(s)	236, 404, 529
Bst6I	CTCTTC	2 cut(s)	275, 333
BstDEI	CTNAG	2 cut(s)	6, 519
BstF5I	GGATG	1 cut(s)	457
BstHHI	GCGC	1 cut(s)	457
BstKTI	GATC	2 cut(s)	82, 144
BstMAI	GTCTC	1 cut(s)	128
BstMBI	GATC	2 cut(s)	79, 141
BstMCI	CGRYCG	1 cut(s)	144
BstMWI	GCNNNNNNNGC	1 cut(s)	416
BstNI	CCWGG	2 cut(s)	381, 507
BstSCI	CCNGG	2 cut(s)	379, 505
BstV1I	GCAGC	1 cut(s)	403
BstV2I	GAAGAC	2 cut(s)	200, 405
BsuI	GTATCC	1 cut(s)	503
BtsCI	GGATG	1 cut(s)	457
BtsIMutI	CAGTG	1 cut(s)	468
CfoI	GCGC	1 cut(s)	457
Cfr10I	RCCGGY	1 cut(s)	424
CspAI	ACCGGT	1 cut(s)	424
CviJI	RGCY	9 cut(s)	5, 181, 187, 220, 246, 310, 376, 410, 502
CviKI_1	RGCY	9 cut(s)	5, 181, 187, 220, 246, 310, 376, 410, 502
DdeI	CTNAG	2 cut(s)	6, 519
DpnI	GATC	2 cut(s)	81, 143
DpnII	GATC	2 cut(s)	79, 141
Eam1104I	CTCTTC	2 cut(s)	275, 333
EarI	CTCTTC	2 cut(s)	275, 333
Eco57I	CTGAAG	3 cut(s)	132, 339, 417
EcoRII	CCWGG	2 cut(s)	379, 505
FaiI	YATR	2 cut(s)	171, 356
FalI	AAGNNNNNCTT	4 cut(s)	360, 392, 465, 497
Fnu4HI	GCNGC	2 cut(s)	417, 420
FokI	GGATG	1 cut(s)	444
Fsp4HI	GCNGC	2 cut(s)	417, 420
FspBI	CTAG	1 cut(s)	243
GlaI	GCGC	1 cut(s)	456
GluI	GCNGC	2 cut(s)	417, 420
HapII	CCGG	2 cut(s)	182, 425
HhaI	GCGC	1 cut(s)	457
Hin6I	GCGC	1 cut(s)	455
HinP1I	GCGC	1 cut(s)	455
HindIII	AAGCTT	3 cut(s)	218, 374, 500
HinfI	GANTC	3 cut(s)	59, 136, 478
HpaII	CCGG	2 cut(s)	182, 425
HphI	GGTGA	2 cut(s)	215, 287
Hpy188I	TCNGA	4 cut(s)	141, 151, 178, 271
Hpy188III	TCNNGA	4 cut(s)	16, 26, 212, 482
Hpy99I	CGWCG	1 cut(s)	416
HpyAV	CCTTC	3 cut(s)	157, 257, 289
HpyCH4III	ACNGT	3 cut(s)	236, 404, 529
HpyF10VI	GCNNNNNNNGC	1 cut(s)	416
HpyF3I	CTNAG	2 cut(s)	6, 519
HspAI	GCGC	1 cut(s)	455
Kzo9I	GATC	2 cut(s)	79, 141
LmnI	GCTCC	2 cut(s)	184, 251
Lsp1109I	GCAGC	1 cut(s)	403
LweI	GCATC	1 cut(s)	466
MaeI	CTAG	1 cut(s)	243
MaeIII	GTNAC	1 cut(s)	73
MalI	GATC	2 cut(s)	81, 143
MboI	GATC	2 cut(s)	79, 141
MlyI	GAGTC	1 cut(s)	130
MroXI	GAANNNNTTC	2 cut(s)	207, 219
MseI	TTAA	2 cut(s)	195, 492
MspI	CCGG	2 cut(s)	182, 425
MspR9I	CCNGG	2 cut(s)	381, 507
MvaI	CCWGG	2 cut(s)	381, 507
MwoI	GCNNNNNNNGC	1 cut(s)	416
NdeII	GATC	2 cut(s)	79, 141
NlaIV	GGNNCC	3 cut(s)	39, 186, 423
PcsI	WCGNNNNNNNCGW	1 cut(s)	408
PdmI	GAANNNNTTC	2 cut(s)	207, 219
PfeI	GAWTC	2 cut(s)	59, 478
PfoI	TCCNGGA	2 cut(s)	379, 505
PinAI	ACCGGT	1 cut(s)	424
PkrI	GCNGC	2 cut(s)	418, 421
Ple19I	CGATCG	1 cut(s)	144
PleI	GAGTC	1 cut(s)	130
PpsI	GAGTC	1 cut(s)	130
Psp6I	CCWGG	2 cut(s)	379, 505
PspGI	CCWGG	2 cut(s)	379, 505
PspN4I	GGNNCC	3 cut(s)	39, 186, 423
PvuI	CGATCG	1 cut(s)	144
SaqAI	TTAA	2 cut(s)	195, 492
SatI	GCNGC	2 cut(s)	417, 420
Sau3AI	GATC	2 cut(s)	79, 141
SchI	GAGTC	1 cut(s)	130
ScrFI	CCNGG	2 cut(s)	381, 507
SfaNI	GCATC	1 cut(s)	466
SgrAI	CRCCGGYG	1 cut(s)	424
SmlI	CTYRAG	2 cut(s)	250, 482
SmoI	CTYRAG	2 cut(s)	250, 482
SsiI	CCGC	1 cut(s)	419
SspMI	CTAG	1 cut(s)	243
StyD4I	CCNGG	2 cut(s)	379, 505
TaaI	ACNGT	3 cut(s)	236, 404, 529
TaqI	TCGA	1 cut(s)	93
TauI	GCSGC	1 cut(s)	422
TfiI	GAWTC	2 cut(s)	59, 478
Tru1I	TTAA	2 cut(s)	195, 492
Tru9I	TTAA	2 cut(s)	195, 492
TscAI	CASTG	1 cut(s)	468
TseI	GCWGC	1 cut(s)	416
TspDTI	ATGAA	1 cut(s)	158
TspRI	CASTG	1 cut(s)	468
XmnI	GAANNNNTTC	2 cut(s)	207, 219
XspI	CTAG	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.