Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010925

Physical Location & Seq

Genomic Coordinates Reverse (-)

7087903 .. 7089606

Gene Structure 1704 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G20450.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGCAGAAGAGTACAAGAACACCGTTCCAGAGCAGGAGACCCCTAAGGTTGCAACAGAGGAATCATCGGCGCCAGAGATTAAGGAGCGGGGAATGTTCGATTTCTTGAAGAAAAAGGAGGAAGTTAAACCTCAAGAAACGACGACTCTCGCGTCTGAGTTTGAGCACAAGACTCAGATCTCTGAACCAGAGTCGTTTGTGGCCAAGCACGAAGAAGAGGAACATAAGCCTACTCTTCTCGAGCAGCTTCACCAGAAGCACGAGGAGGAAGAAGAAAACAAGCCAAGTCTCCTCGACAAACTCCACCGATCCAACAGCTCTTCTTCCTCTTCGAGTGATGAAGAAGGTGAAGACGGTGAGAAGAAGAAGAAGGAGAAAAAGAAGAAGATTGTTGAAGGAGATCATGTGAAAACAGTGGAAGAAGAGAATCAAGGAGTAATGGACAGGATTAAGGAGAAGTTTCCACTCGGAGAGAAACCAGGGGGTGATGATGTACCAGTCGTCACCACCATGCCAGCACCACATTCGGTAGAGGATCACAAACCAGAGGAAGAAGAGAAGAAAGGGTTTATGGATAAGATCAAGGAGAAGCTTCCAGGCCACAGCAAGAAACCAGAGGATTCACAAGTCGTCAACACCACACCGCTGGTTGAAACAGCAACACCGATTGCTGACATCCCGGAGGAGAAGAAGGGATTTATGGACAAGATCAAAGAGAAGCTTCCAGGTTATCACGCCAAGACCACTGGAGAGGAAGAGAAGAAAGAAAAAGTGTCTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001786 GO:0003674 GO:0003779 GO:0005488 GO:0005507 GO:0005515 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005911 GO:0006950 GO:0008092 GO:0008150 GO:0008289 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009506 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009737 GO:0010029 GO:0010033 GO:0010035 GO:0016020 GO:0016151 GO:0019898 GO:0030054 GO:0031210 GO:0031647 GO:0033993 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048580 GO:0050789 GO:0050793 GO:0050821 GO:0050896 GO:0050997 GO:0051239 GO:0055044 GO:0065007 GO:0065008 GO:0070405 GO:0072341 GO:0090559 GO:0097305 GO:1900140 GO:1901700 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dehydrin

Protein Analysis

260

Amino Acids

29.55

Weight (kDa)

5.12

Isoelectric Point (pI)

58.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dehydrin	PF00257	143 - 200	3.7e-10	Dehydrin
Dehydrin	PF00257	185 - 244	1.1e-14	Dehydrin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20440 AT1G20450 AT1G20450 AT1G76180 AT1G76180
fragaria_vesca	FvH4_2g37690
malus_domestica	MD08G1004500.v1.1 MD15G1003900.v1.1
prunus_persica	Prupe.1G356400_v2.0.a1
pyrus_communis	pycom15g00280
rosa_chinensis	RchiOBHm_Chr6g0304041
rosa_laevigata	RLG00000011023
rosa_multiflora	Rmu_sc0003805.1_g000015
rosa_roxburghii	Rroxscaffold_7G00164160
rosa_rugosa	Rorug06G0327200
rosa_samantha	Rh6AG441000 Rh6BG461800 Rh6CG453200 Rh6DG440500
rosa_wichuraiana	Rw6G038210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	151
AccB1I	GGYRCC	1 cut(s)	70
AccBSI	CCGCTC	1 cut(s)	88
AccII	CGCG	1 cut(s)	152
AciI	CCGC	2 cut(s)	88, 644
AclWI	GGATC	2 cut(s)	303, 543
AcoI	YGGCCR	1 cut(s)	201
AcyI	GRCGYC	1 cut(s)	71
AfaI	GTAC	2 cut(s)	14, 495
AgsI	TTSAA	3 cut(s)	109, 395, 653
AjnI	CCWGG	3 cut(s)	478, 595, 724
AluBI	AGCT	4 cut(s)	247, 318, 592, 721
AluI	AGCT	4 cut(s)	247, 318, 592, 721
Alw21I	GWGCWC	1 cut(s)	168
Alw26I	GTCTC	2 cut(s)	32, 293
AlwI	GGATC	2 cut(s)	303, 543
Ama87I	CYCGRG	1 cut(s)	239
AoxI	GGCC	2 cut(s)	201, 598
ApeKI	GCWGC	1 cut(s)	244
AspLEI	GCGC	1 cut(s)	73
AsuC2I	CCSGG	1 cut(s)	680
AsuHPI	GGTGA	5 cut(s)	242, 359, 368, 496, 497
AvaI	CYCGRG	1 cut(s)	239
AxyI	CCTNAGG	1 cut(s)	45
BalI	TGGCCA	1 cut(s)	203
BanI	GGYRCC	1 cut(s)	70
BauI	CACGAG	1 cut(s)	260
BbsI	GAAGAC	1 cut(s)	357
Bbv12I	GWGCWC	1 cut(s)	168
BbvI	GCAGC	1 cut(s)	256
BcgI	CGANNNNNNTGC	2 cut(s)	507, 541
BciT130I	CCWGG	3 cut(s)	480, 597, 726
BcnI	CCSGG	1 cut(s)	680
BcoDI	GTCTC	2 cut(s)	32, 293
BfoI	RGCGCY	1 cut(s)	74
BglII	AGATCT	1 cut(s)	177
BisI	GCNGC	1 cut(s)	245
BlsI	GCNGC	1 cut(s)	246
Bme1390I	CCNGG	4 cut(s)	480, 597, 680, 726
BmeT110I	CYCGRG	1 cut(s)	239
BmiI	GGNNCC	1 cut(s)	72
BmrFI	CCNGG	4 cut(s)	480, 597, 680, 726
BpiI	GAAGAC	1 cut(s)	357
BpmI	CTGGAG	1 cut(s)	768
BpuEI	CTTGAG	1 cut(s)	117
BpuMI	CCSGG	1 cut(s)	680
BsaHI	GRCGYC	1 cut(s)	71
BsaI	GGTCTC	1 cut(s)	32
BsaJI	CCNNGG	1 cut(s)	479
BsaXI	ACNNNNNCTCC	2 cut(s)	390, 420
Bse1I	ACTGG	2 cut(s)	497, 751
Bse21I	CCTNAGG	1 cut(s)	45
BseBI	CCWGG	3 cut(s)	480, 597, 726
BseDI	CCNNGG	1 cut(s)	479
BseGI	GGATG	1 cut(s)	675
BseMII	CTCAG	2 cut(s)	147, 188
BseNI	ACTGG	2 cut(s)	497, 751
BseRI	GAGGAG	3 cut(s)	278, 281, 698
BseXI	GCAGC	1 cut(s)	256
Bsh1236I	CGCG	1 cut(s)	152
BshFI	GGCC	2 cut(s)	203, 600
BshNI	GGYRCC	1 cut(s)	70
BsiHKAI	GWGCWC	1 cut(s)	168
BsiHKCI	CYCGRG	1 cut(s)	239
BsiSI	CCGG	1 cut(s)	680
BsmAI	GTCTC	2 cut(s)	32, 293
BsnI	GGCC	2 cut(s)	203, 600
Bso31I	GGTCTC	1 cut(s)	32
BsoBI	CYCGRG	1 cut(s)	239
Bsp1286I	GDGCHC	1 cut(s)	168
Bsp143I	GATC	6 cut(s)	177, 308, 400, 535, 579, 708
BspACI	CCGC	2 cut(s)	88, 644
BspANI	GGCC	2 cut(s)	203, 600
BspCNI	CTCAG	2 cut(s)	148, 187
BspFNI	CGCG	1 cut(s)	152
BspLI	GGNNCC	1 cut(s)	72
BspPI	GGATC	2 cut(s)	303, 543
BspQI	GCTCTTC	1 cut(s)	325
BspT107I	GGYRCC	1 cut(s)	70
BspTNI	GGTCTC	1 cut(s)	32
BsrBI	CCGCTC	1 cut(s)	88
BsrI	ACTGG	2 cut(s)	497, 751
BssECI	CCNNGG	1 cut(s)	479
BssMI	GATC	6 cut(s)	177, 308, 400, 535, 579, 708
BssNI	GRCGYC	1 cut(s)	71
BssSI	CACGAG	1 cut(s)	260
Bst2BI	CACGAG	1 cut(s)	260
Bst2UI	CCWGG	3 cut(s)	480, 597, 726
Bst4CI	ACNGT	3 cut(s)	25, 356, 415
Bst6I	CTCTTC	8 cut(s)	3, 210, 240, 325, 334, 417, 549, 750
BstACI	GRCGYC	1 cut(s)	71
BstC8I	GCNNGC	1 cut(s)	516
BstDEI	CTNAG	3 cut(s)	45, 156, 174
BstF5I	GGATG	1 cut(s)	675
BstFNI	CGCG	1 cut(s)	152
BstH2I	RGCGCY	1 cut(s)	74
BstHHI	GCGC	1 cut(s)	73
BstKTI	GATC	6 cut(s)	180, 311, 403, 538, 582, 711
BstMAI	GTCTC	2 cut(s)	32, 293
BstMBI	GATC	6 cut(s)	177, 308, 400, 535, 579, 708
BstNI	CCWGG	3 cut(s)	480, 597, 726
BstSCI	CCNGG	4 cut(s)	478, 595, 678, 724
BstUI	CGCG	1 cut(s)	152
BstV1I	GCAGC	1 cut(s)	256
BstV2I	GAAGAC	1 cut(s)	357
BstX2I	RGATCY	1 cut(s)	177
BstXI	CCANNNNNNTGG	1 cut(s)	646
BstYI	RGATCY	1 cut(s)	177
Bsu36I	CCTNAGG	1 cut(s)	45
BsuRI	GGCC	2 cut(s)	203, 600
BtsCI	GGATG	1 cut(s)	675
BtsIMutI	CAGTG	2 cut(s)	420, 744
Cac8I	GCNNGC	1 cut(s)	516
CfoI	GCGC	1 cut(s)	73
CseI	GACGC	1 cut(s)	141
Csp6I	GTAC	2 cut(s)	13, 494
CviAII	CATG	2 cut(s)	404, 511
CviJI	RGCY	8 cut(s)	203, 229, 247, 283, 318, 592, 600, 721
CviKI_1	RGCY	8 cut(s)	203, 229, 247, 283, 318, 592, 600, 721
CviQI	GTAC	2 cut(s)	13, 494
DdeI	CTNAG	3 cut(s)	45, 156, 174
DinI	GGCGCC	1 cut(s)	72
DpnI	GATC	6 cut(s)	179, 310, 402, 537, 581, 710
DpnII	GATC	6 cut(s)	177, 308, 400, 535, 579, 708
DrdI	GACNNNNNNGTC	1 cut(s)	151
DseDI	GACNNNNNNGTC	1 cut(s)	151
EaeI	YGGCCR	1 cut(s)	201
Eam1104I	CTCTTC	8 cut(s)	3, 210, 240, 325, 334, 417, 549, 750
EarI	CTCTTC	8 cut(s)	3, 210, 240, 325, 334, 417, 549, 750
Eco31I	GGTCTC	1 cut(s)	32
Eco81I	CCTNAGG	1 cut(s)	45
Eco88I	CYCGRG	1 cut(s)	239
EcoRII	CCWGG	3 cut(s)	478, 595, 724
EgeI	GGCGCC	1 cut(s)	72
EheI	GGCGCC	1 cut(s)	72
FaeI	CATG	2 cut(s)	407, 514
FaiI	YATR	5 cut(s)	225, 405, 512, 572, 701
FalI	AAGNNNNNCTT	2 cut(s)	705, 737
FatI	CATG	2 cut(s)	403, 510
FauI	CCCGC	1 cut(s)	81
Fnu4HI	GCNGC	1 cut(s)	245
FokI	GGATG	1 cut(s)	662
Fsp4HI	GCNGC	1 cut(s)	245
GlaI	GCGC	1 cut(s)	72
GluI	GCNGC	1 cut(s)	245
GsuI	CTGGAG	1 cut(s)	768
HaeII	RGCGCY	1 cut(s)	74
HaeIII	GGCC	2 cut(s)	203, 600
HapII	CCGG	1 cut(s)	680
HgaI	GACGC	1 cut(s)	141
HhaI	GCGC	1 cut(s)	73
Hin1I	GRCGYC	1 cut(s)	71
Hin1II	CATG	2 cut(s)	407, 514
Hin6I	GCGC	1 cut(s)	71
HinP1I	GCGC	1 cut(s)	71
HincII	GTYRAC	1 cut(s)	634
HindII	GTYRAC	1 cut(s)	634
HindIII	AAGCTT	2 cut(s)	590, 719
HinfI	GANTC	6 cut(s)	62, 145, 172, 191, 427, 620
HpaII	CCGG	1 cut(s)	680
HphI	GGTGA	5 cut(s)	242, 359, 368, 496, 497
Hpy166II	GTNNAC	1 cut(s)	634
Hpy188I	TCNGA	5 cut(s)	157, 177, 184, 470, 778
Hpy188III	TCNNGA	4 cut(s)	29, 106, 134, 239
Hpy8I	GTNNAC	1 cut(s)	634
Hpy99I	CGWCG	1 cut(s)	145
HpyAV	CCTTC	4 cut(s)	338, 364, 389, 685
HpyCH4III	ACNGT	3 cut(s)	25, 356, 415
HpyCH4V	TGCA	1 cut(s)	53
HpyF3I	CTNAG	3 cut(s)	45, 156, 174
Hsp92I	GRCGYC	1 cut(s)	71
Hsp92II	CATG	2 cut(s)	407, 514
HspAI	GCGC	1 cut(s)	71
KasI	GGCGCC	1 cut(s)	70
Kzo9I	GATC	6 cut(s)	177, 308, 400, 535, 579, 708
LguI	GCTCTTC	1 cut(s)	325
LmnI	GCTCC	1 cut(s)	85
Lsp1109I	GCAGC	1 cut(s)	256
MaeIII	GTNAC	1 cut(s)	502
MalI	GATC	6 cut(s)	179, 310, 402, 537, 581, 710
MbiI	CCGCTC	1 cut(s)	88
MboI	GATC	6 cut(s)	177, 308, 400, 535, 579, 708
MflI	RGATCY	1 cut(s)	177
MhlI	GDGCHC	1 cut(s)	168
MlsI	TGGCCA	1 cut(s)	203
MluNI	TGGCCA	1 cut(s)	203
Mly113I	GGCGCC	1 cut(s)	71
MlyI	GAGTC	3 cut(s)	139, 166, 200
MmeI	TCCRAC	1 cut(s)	336
Mox20I	TGGCCA	1 cut(s)	203
MscI	TGGCCA	1 cut(s)	203
MseI	TTAA	4 cut(s)	81, 126, 450, 781
MslI	CAYNNNNRTG	1 cut(s)	509
Msp20I	TGGCCA	1 cut(s)	203
MspA1I	CMGCKG	1 cut(s)	646
MspI	CCGG	1 cut(s)	680
MspR9I	CCNGG	4 cut(s)	480, 597, 680, 726
MvaI	CCWGG	3 cut(s)	480, 597, 726
MvnI	CGCG	1 cut(s)	152
NarI	GGCGCC	1 cut(s)	71
NciI	CCSGG	1 cut(s)	680
NdeII	GATC	6 cut(s)	177, 308, 400, 535, 579, 708
NlaIII	CATG	2 cut(s)	407, 514
NlaIV	GGNNCC	1 cut(s)	72
NmuCI	GTSAC	1 cut(s)	502
PaeR7I	CTCGAG	1 cut(s)	239
PciSI	GCTCTTC	1 cut(s)	325
PcsI	WCGNNNNNNNCGW	1 cut(s)	149
PfeI	GAWTC	3 cut(s)	62, 427, 620
PfoI	TCCNGGA	1 cut(s)	678
PkrI	GCNGC	1 cut(s)	246
PleI	GAGTC	3 cut(s)	139, 166, 199
PluTI	GGCGCC	1 cut(s)	74
PpsI	GAGTC	3 cut(s)	139, 166, 199
Psp6I	CCWGG	3 cut(s)	478, 595, 724
PspGI	CCWGG	3 cut(s)	478, 595, 724
PspN4I	GGNNCC	1 cut(s)	72
PsuI	RGATCY	1 cut(s)	177
RsaI	GTAC	2 cut(s)	14, 495
RsaNI	GTAC	2 cut(s)	13, 494
RseI	CAYNNNNRTG	1 cut(s)	509
SapI	GCTCTTC	1 cut(s)	325
SaqAI	TTAA	4 cut(s)	81, 126, 450, 781
SatI	GCNGC	1 cut(s)	245
Sau3AI	GATC	6 cut(s)	177, 308, 400, 535, 579, 708
SchI	GAGTC	3 cut(s)	139, 166, 200
ScrFI	CCNGG	4 cut(s)	480, 597, 680, 726
SduI	GDGCHC	1 cut(s)	168
SetI	ASST	8 cut(s)	51, 133, 249, 320, 349, 594, 723, 730
SfoI	GGCGCC	1 cut(s)	72
Sfr274I	CTCGAG	1 cut(s)	239
SlaI	CTCGAG	1 cut(s)	239
SmiMI	CAYNNNNRTG	1 cut(s)	509
SmlI	CTYRAG	2 cut(s)	132, 239
SmoI	CTYRAG	2 cut(s)	132, 239
SsiI	CCGC	2 cut(s)	88, 644
SspDI	GGCGCC	1 cut(s)	70
StyD4I	CCNGG	4 cut(s)	478, 595, 678, 724
TaaI	ACNGT	3 cut(s)	25, 356, 415
TaqI	TCGA	4 cut(s)	99, 240, 294, 332
TatI	WGTACW	1 cut(s)	12
TfiI	GAWTC	3 cut(s)	62, 427, 620
Tru1I	TTAA	4 cut(s)	81, 126, 450, 781
Tru9I	TTAA	4 cut(s)	81, 126, 450, 781
TscAI	CASTG	2 cut(s)	420, 751
TseFI	GTSAC	1 cut(s)	502
TseI	GCWGC	1 cut(s)	244
Tsp45I	GTSAC	1 cut(s)	502
TspDTI	ATGAA	1 cut(s)	354
TspRI	CASTG	2 cut(s)	420, 751
XhoI	CTCGAG	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.