Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003805.1

Orthogroup ID

OG0010925

Physical Location & Seq

Genomic Coordinates Forward (+)

63457 .. 64867

Gene Structure 1411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003805.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

atggctggtgagtacaacaaaagccacgagtacgagaccaaggccgaggagggcggtccagttgagacccaggatcgtgggttgtttgatttcttggggaagaagaaggaggaggagaagcctattcatcaagaacaggaggaggtgattgtcaccgagttcgagaaagtcaaggtgtctgaggctgagccagcagcttatgtagactacagcaaacctgccgagcatggttatcatcatgaggaacataaggaggaggaggtggagaagaagcacgaaactctatcagagaagcttcgccgatccgacagcagctctagctcgtctagcgatgaggaaggagacgacgaagagaaaaggcagaagaggaaggagaggaaggagaagaagggactgacggaaaagatcaaggagaagatctccggcgacaaagaagaagagaagaaacacggctaccagcaggacactgagatcccggtggagaagttccacgaggaacacggccatccctacgatcacggcccagtcgtccaccaccatgaggagccaaaagaacataaggaggaggaggtggagaagaagcacgaaactctatccgagaagcttcgccgatccgacagcagctctagctcgtctagcgatgaggaaggagacgacgaagagaaaaggcagaagaggaaggagaggaaggagaagaagggactgacggaaaagatcaaggagaagatctccggcgacaaagaagaagagaagaaacacggctaccagcaggacactgagatcccggtggagaagttccacgaggaacacggccatccctacgatcacggcccagtcgtccaccaccatgaggagccaaaagttgaaccaacagctgtgtacggagaggaggagaagaaagaggacgagaagaagggtttccttgagaagatcaaggacaagcttcccggacacaagaagccagaggatggtccagttgtgtctccaccaccgccggagtatgaaaatgttgagcctgctcatcatgaaggtgaggtgaaggagaaaaagggtttattggagaagatcaaggagaagattcccgggtaccatccgaagactgaggaagagaaggagaaggaaaaggagaaagagaagccaactggttcttattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001786 GO:0003674 GO:0003779 GO:0005488 GO:0005507 GO:0005515 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005911 GO:0006950 GO:0008092 GO:0008150 GO:0008289 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009506 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009737 GO:0010029 GO:0010033 GO:0010035 GO:0016020 GO:0016151 GO:0019898 GO:0030054 GO:0031210 GO:0031647 GO:0033993 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048580 GO:0050789 GO:0050793 GO:0050821 GO:0050896 GO:0050997 GO:0051239 GO:0055044 GO:0065007 GO:0065008 GO:0070405 GO:0072341 GO:0090559 GO:0097305 GO:1900140 GO:1901700 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dehydrin

Protein Analysis

384

Amino Acids

44.84

Weight (kDa)

5.42

Isoelectric Point (pI)

61.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20440 AT1G20450 AT1G20450 AT1G76180 AT1G76180
fragaria_vesca	FvH4_2g37690
malus_domestica	MD08G1004500.v1.1 MD15G1003900.v1.1
prunus_persica	Prupe.1G356400_v2.0.a1
pyrus_communis	pycom15g00280
rosa_chinensis	RchiOBHm_Chr6g0304041
rosa_laevigata	RLG00000011023
rosa_multiflora	Rmu_sc0003805.1_g000015
rosa_roxburghii	Rroxscaffold_7G00164160
rosa_rugosa	Rorug06G0327200
rosa_samantha	Rh6AG441000 Rh6BG461800 Rh6CG453200 Rh6DG440500
rosa_wichuraiana	Rw6G038210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	226
Acc65I	GGTACC	1 cut(s)	1086
AccB1I	GGYRCC	1 cut(s)	1086
AccB7I	CCANNNNNTGG	1 cut(s)	968
AccI	GTMKAC	1 cut(s)	204
AciI	CCGC	2 cut(s)	54, 992
AclWI	GGATC	5 cut(s)	81, 297, 466, 606, 775
AcoI	YGGCCR	2 cut(s)	502, 811
AfaI	GTAC	4 cut(s)	14, 32, 881, 1088
AfiI	CCNNNNNNNGG	3 cut(s)	541, 850, 968
AgsI	TTSAA	1 cut(s)	866
AjnI	CCWGG	1 cut(s)	69
AluBI	AGCT	9 cut(s)	197, 295, 315, 321, 604, 624, 630, 875, 943
AluI	AGCT	9 cut(s)	197, 295, 315, 321, 604, 624, 630, 875, 943
Alw26I	GTCTC	5 cut(s)	29, 59, 336, 645, 987
AlwI	GGATC	5 cut(s)	81, 297, 466, 606, 775
Ama87I	CYCGRG	1 cut(s)	1082
AoxI	GGCC	5 cut(s)	42, 502, 520, 811, 829
ApeKI	GCWGC	3 cut(s)	194, 312, 621
Asp700I	GAANNNNTTC	1 cut(s)	917
Asp718I	GGTACC	1 cut(s)	1086
AspS9I	GGNCC	4 cut(s)	56, 521, 830, 971
AsuC2I	CCSGG	5 cut(s)	476, 785, 948, 1083, 1084
AsuHPI	GGTGA	5 cut(s)	20, 145, 157, 1043, 1048
AvaI	CYCGRG	1 cut(s)	1082
AvaII	GGWCC	2 cut(s)	56, 971
BanI	GGYRCC	1 cut(s)	1086
BauI	CACGAG	3 cut(s)	26, 491, 800
BbsI	GAAGAC	1 cut(s)	1103
BbvI	GCAGC	3 cut(s)	206, 324, 633
BccI	CCATC	4 cut(s)	513, 822, 962, 1098
BceAI	ACGGC	6 cut(s)	466, 517, 535, 775, 826, 844
BciT130I	CCWGG	1 cut(s)	71
BcnI	CCSGG	5 cut(s)	476, 785, 948, 1083, 1084
BcoDI	GTCTC	5 cut(s)	29, 59, 336, 645, 987
BfaI	CTAG	4 cut(s)	318, 327, 627, 636
BfmI	CTRYAG	1 cut(s)	208
BfuAI	ACCTGC	1 cut(s)	226
BglII	AGATCT	2 cut(s)	417, 726
BisI	GCNGC	3 cut(s)	195, 313, 622
BlpI	GCTNAGC	1 cut(s)	186
BlsI	GCNGC	3 cut(s)	196, 314, 623
Bme1390I	CCNGG	6 cut(s)	71, 476, 785, 948, 1083, 1084
Bme18I	GGWCC	2 cut(s)	56, 971
BmeT110I	CYCGRG	1 cut(s)	1082
BmgT120I	GGNCC	4 cut(s)	56, 521, 830, 971
BmiI	GGNNCC	3 cut(s)	546, 855, 1088
BmrFI	CCNGG	6 cut(s)	71, 476, 785, 948, 1083, 1084
BmrI	ACTGGG	2 cut(s)	518, 827
BmuI	ACTGGG	2 cut(s)	518, 827
BpiI	GAAGAC	1 cut(s)	1103
BplI	GAGNNNNNCTC	4 cut(s)	404, 436, 713, 745
Bpu1102I	GCTNAGC	1 cut(s)	186
BpuEI	CTTGAG	1 cut(s)	944
BpuMI	CCSGG	5 cut(s)	476, 785, 948, 1083, 1084
BsaI	GGTCTC	2 cut(s)	29, 59
BsaJI	CCNNGG	4 cut(s)	39, 45, 69, 1082
Bsc4I	CCNNNNNNNGG	3 cut(s)	541, 850, 968
Bse1I	ACTGG	5 cut(s)	59, 524, 833, 974, 1147
BseBI	CCWGG	1 cut(s)	71
BseDI	CCNNGG	4 cut(s)	39, 45, 69, 1082
BseGI	GGATG	4 cut(s)	505, 814, 973, 1090
BseLI	CCNNNNNNNGG	3 cut(s)	541, 850, 968
BseMII	CTCAG	5 cut(s)	171, 177, 459, 768, 1092
BseNI	ACTGG	5 cut(s)	59, 524, 833, 974, 1147
BseXI	GCAGC	3 cut(s)	206, 324, 633
BshFI	GGCC	5 cut(s)	44, 504, 522, 813, 831
BshNI	GGYRCC	1 cut(s)	1086
BsiHKCI	CYCGRG	1 cut(s)	1082
BsiSI	CCGG	7 cut(s)	423, 476, 732, 785, 948, 995, 1083
BslFI	GGGAC	2 cut(s)	405, 714
BslI	CCNNNNNNNGG	3 cut(s)	541, 850, 968
BsmAI	GTCTC	5 cut(s)	29, 59, 336, 645, 987
BsmBI	CGTCTC	2 cut(s)	336, 645
BsmFI	GGGAC	2 cut(s)	405, 714
BsnI	GGCC	5 cut(s)	44, 504, 522, 813, 831
Bso31I	GGTCTC	2 cut(s)	29, 59
BsoBI	CYCGRG	1 cut(s)	1082
Bsp1720I	GCTNAGC	1 cut(s)	186
BspACI	CCGC	2 cut(s)	54, 992
BspANI	GGCC	5 cut(s)	44, 504, 522, 813, 831
BspCNI	CTCAG	5 cut(s)	172, 178, 460, 769, 1093
BspHI	TCATGA	2 cut(s)	238, 1024
BspLI	GGNNCC	3 cut(s)	546, 855, 1088
BspMI	ACCTGC	1 cut(s)	226
BspPI	GGATC	5 cut(s)	81, 297, 466, 606, 775
BspT107I	GGYRCC	1 cut(s)	1086
BspTNI	GGTCTC	2 cut(s)	29, 59
BsrI	ACTGG	5 cut(s)	59, 524, 833, 974, 1147
BssECI	CCNNGG	4 cut(s)	39, 45, 69, 1082
BssSI	CACGAG	3 cut(s)	26, 491, 800
BssT1I	CCWWGG	1 cut(s)	39
Bst2BI	CACGAG	3 cut(s)	26, 491, 800
Bst2UI	CCWGG	1 cut(s)	71
Bst6I	CTCTTC	7 cut(s)	345, 359, 432, 654, 668, 741, 1101
BstC8I	GCNNGC	2 cut(s)	192, 1017
BstDEI	CTNAG	5 cut(s)	180, 186, 468, 777, 1101
BstF5I	GGATG	4 cut(s)	505, 814, 973, 1090
BstMAI	GTCTC	5 cut(s)	29, 59, 336, 645, 987
BstMWI	GCNNNNNNNGC	5 cut(s)	191, 318, 327, 627, 636
BstNI	CCWGG	1 cut(s)	71
BstSCI	CCNGG	6 cut(s)	69, 474, 783, 946, 1081, 1082
BstSFI	CTRYAG	1 cut(s)	208
BstV1I	GCAGC	3 cut(s)	206, 324, 633
BstV2I	GAAGAC	1 cut(s)	1103
BstX2I	RGATCY	4 cut(s)	417, 471, 726, 780
BstXI	CCANNNNNNTGG	1 cut(s)	77
BstYI	RGATCY	4 cut(s)	417, 471, 726, 780
BsuRI	GGCC	5 cut(s)	44, 504, 522, 813, 831
BtgZI	GCGATG	2 cut(s)	345, 654
BtsCI	GGATG	4 cut(s)	505, 814, 973, 1090
BtsIMutI	CAGTG	2 cut(s)	465, 774
BveI	ACCTGC	1 cut(s)	226
Cac8I	GCNNGC	2 cut(s)	192, 1017
CciI	TCATGA	2 cut(s)	238, 1024
Cfr13I	GGNCC	4 cut(s)	56, 521, 830, 971
Cfr9I	CCCGGG	1 cut(s)	1082
Csp6I	GTAC	4 cut(s)	13, 31, 880, 1087
CviAII	CATG	5 cut(s)	227, 239, 539, 848, 1025
CviQI	GTAC	4 cut(s)	13, 31, 880, 1087
DdeI	CTNAG	5 cut(s)	180, 186, 468, 777, 1101
EaeI	YGGCCR	2 cut(s)	502, 811
Eam1104I	CTCTTC	7 cut(s)	345, 359, 432, 654, 668, 741, 1101
EarI	CTCTTC	7 cut(s)	345, 359, 432, 654, 668, 741, 1101
Eco130I	CCWWGG	1 cut(s)	39
Eco31I	GGTCTC	2 cut(s)	29, 59
Eco47I	GGWCC	2 cut(s)	56, 971
Eco88I	CYCGRG	1 cut(s)	1082
EcoRII	CCWGG	1 cut(s)	69
EcoT14I	CCWWGG	1 cut(s)	39
ErhI	CCWWGG	1 cut(s)	39
Esp3I	CGTCTC	2 cut(s)	336, 645
FaeI	CATG	5 cut(s)	230, 242, 542, 851, 1028
FaiI	YATR	9 cut(s)	201, 228, 240, 249, 540, 558, 849, 1002, 1026
FaqI	GGGAC	2 cut(s)	405, 714
FatI	CATG	5 cut(s)	226, 238, 538, 847, 1024
FblI	GTMKAC	1 cut(s)	204
Fnu4HI	GCNGC	3 cut(s)	195, 313, 622
FokI	GGATG	4 cut(s)	492, 801, 980, 1077
Fsp4HI	GCNGC	3 cut(s)	195, 313, 622
FspBI	CTAG	4 cut(s)	318, 327, 627, 636
GluI	GCNGC	3 cut(s)	195, 313, 622
HaeIII	GGCC	5 cut(s)	44, 504, 522, 813, 831
HapII	CCGG	7 cut(s)	423, 476, 732, 785, 948, 995, 1083
Hin1II	CATG	5 cut(s)	230, 242, 542, 851, 1028
HindIII	AAGCTT	3 cut(s)	293, 602, 941
HinfI	GANTC	1 cut(s)	1078
HpaII	CCGG	7 cut(s)	423, 476, 732, 785, 948, 995, 1083
HphI	GGTGA	5 cut(s)	20, 145, 157, 1043, 1048
Hpy166II	GTNNAC	4 cut(s)	205, 532, 841, 880
Hpy188I	TCNGA	6 cut(s)	181, 289, 307, 598, 616, 1095
Hpy188III	TCNNGA	4 cut(s)	131, 163, 239, 1025
Hpy8I	GTNNAC	4 cut(s)	205, 532, 841, 880
Hpy99I	CGWCG	2 cut(s)	350, 659
HpyF10VI	GCNNNNNNNGC	5 cut(s)	191, 318, 327, 627, 636
HpyF3I	CTNAG	5 cut(s)	180, 186, 468, 777, 1101
Hsp92II	CATG	5 cut(s)	230, 242, 542, 851, 1028
KpnI	GGTACC	1 cut(s)	1090
LmnI	GCTCC	2 cut(s)	544, 853
Lsp1109I	GCAGC	3 cut(s)	206, 324, 633
MaeI	CTAG	4 cut(s)	318, 327, 627, 636
MaeIII	GTNAC	1 cut(s)	151
MflI	RGATCY	4 cut(s)	417, 471, 726, 780
MmeI	TCCRAC	2 cut(s)	330, 639
MroXI	GAANNNNTTC	1 cut(s)	917
MslI	CAYNNNNRTG	3 cut(s)	537, 846, 1029
MspA1I	CMGCKG	1 cut(s)	875
MspI	CCGG	7 cut(s)	423, 476, 732, 785, 948, 995, 1083
MspR9I	CCNGG	6 cut(s)	71, 476, 785, 948, 1083, 1084
MvaI	CCWGG	1 cut(s)	71
MwoI	GCNNNNNNNGC	5 cut(s)	191, 318, 327, 627, 636
NciI	CCSGG	5 cut(s)	476, 785, 948, 1083, 1084
NlaIII	CATG	5 cut(s)	230, 242, 542, 851, 1028
NlaIV	GGNNCC	3 cut(s)	546, 855, 1088
NmeAIII	GCCGAG	2 cut(s)	70, 247
NmuCI	GTSAC	1 cut(s)	151
PagI	TCATGA	2 cut(s)	238, 1024
PcsI	WCGNNNNNNNCGW	2 cut(s)	525, 834
PdmI	GAANNNNTTC	1 cut(s)	917
PfeI	GAWTC	1 cut(s)	1078
PflMI	CCANNNNNTGG	1 cut(s)	968
PfoI	TCCNGGA	1 cut(s)	946
PkrI	GCNGC	3 cut(s)	196, 314, 623
Psp6I	CCWGG	1 cut(s)	69
PspGI	CCWGG	1 cut(s)	69
PspN4I	GGNNCC	3 cut(s)	546, 855, 1088
PspPI	GGNCC	4 cut(s)	56, 521, 830, 971
PsuI	RGATCY	4 cut(s)	417, 471, 726, 780
PvuII	CAGCTG	1 cut(s)	875
RsaI	GTAC	4 cut(s)	14, 32, 881, 1088
RsaNI	GTAC	4 cut(s)	13, 31, 880, 1087
RseI	CAYNNNNRTG	3 cut(s)	537, 846, 1029
SatI	GCNGC	3 cut(s)	195, 313, 622
Sau96I	GGNCC	4 cut(s)	56, 521, 830, 971
ScrFI	CCNGG	6 cut(s)	71, 476, 785, 948, 1083, 1084
SfcI	CTRYAG	1 cut(s)	208
SinI	GGWCC	2 cut(s)	56, 971
SmaI	CCCGGG	1 cut(s)	1084
SmiMI	CAYNNNNRTG	3 cut(s)	537, 846, 1029
SmlI	CTYRAG	1 cut(s)	923
SmoI	CTYRAG	1 cut(s)	923
SsiI	CCGC	2 cut(s)	54, 992
SspMI	CTAG	4 cut(s)	318, 327, 627, 636
StyD4I	CCNGG	6 cut(s)	69, 474, 783, 946, 1081, 1082
StyI	CCWWGG	1 cut(s)	39
TaqI	TCGA	1 cut(s)	162
TatI	WGTACW	1 cut(s)	12
TfiI	GAWTC	1 cut(s)	1078
TscAI	CASTG	2 cut(s)	472, 781
TseFI	GTSAC	1 cut(s)	151
TseI	GCWGC	3 cut(s)	194, 312, 621
Tsp45I	GTSAC	1 cut(s)	151
TspDTI	ATGAA	3 cut(s)	116, 1017, 1041
TspGWI	ACGGA	3 cut(s)	413, 722, 897
TspMI	CCCGGG	1 cut(s)	1082
TspRI	CASTG	2 cut(s)	472, 781
Van91I	CCANNNNNTGG	1 cut(s)	968
VpaK11BI	GGWCC	2 cut(s)	56, 971
XmaI	CCCGGG	1 cut(s)	1082
XmiI	GTMKAC	1 cut(s)	204
XmnI	GAANNNNTTC	1 cut(s)	917
XspI	CTAG	4 cut(s)	318, 327, 627, 636

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.