Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0010925

Physical Location & Seq

Genomic Coordinates Forward (+)

238037 .. 241299

Gene Structure 3263 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1003900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGCGGAGGAGTACAACAAGAGCCAAGAACACGAGTACGAGAGGAAGACTGGGGATTACGAGGAAGGATCTGGTGCAGGCGAGACCAAGGATCGCGGGTTGTTTGATTTCTTGGGGAAGAAAGCGGAGGACAAGCCAACTTCTTATCAGCATGAGGAGAAGCCAGCTTCTTATCAGGAGGAGGAGGTGATCGTCACTGAGTTTGATGAGAAAGCCAAGATCTCCGATCATCATGAGGCACTGGCTCCTGATCAGTACACATCATCATACAGCAAAGTAGAAGAGGACAAGGAGAAGAAGCACGAGAATCTCTTGCAGAAGTTTCACCGATCTAACAGCAGCTCTAGCTCTTCAAGCGATGAGGAGGAAGATGAAGAGAAGAAGAAGCAGAGGAAAGAAAAGAAGGGATTGAAGGATAAGATCAAGGAGAAGATCTCCGGTGATGATCACAAGGAAGAAGGCTATCACAAAGAGGACACGGCTGTCCCAGTGGAGAAAGTGTACGAGGAGGAACATCATCATCAAGCTCCAGCTCCGGTTGTCCATCACCACGAAGAGCCCACTGACTACCCAACTGAGGAAAAGAAGGGTTTCCTCGAAAAGATCAAGGAAAAGCTTCCTGGCCACAAGAAGACTGAGGAGGTTCCAGTTGGTGCTGCTTCGTACGAACAGCAGAGTCACGATCATCATGCCACGGAGCCACCGGTGGTAGCCTCTTATGAAGCTGGCGAAGAGCCCAAGGAAAAGAAGGGTATTATGGAGAAGATAAAGGAAAAGCTTCCTGGGTACCATTCCAAGACCGAGGAAGATCACAAGGACATCAAGGAGAAAGAGAAGGATACTCCTTCCTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001786 GO:0003674 GO:0003779 GO:0005488 GO:0005507 GO:0005515 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005911 GO:0006950 GO:0008092 GO:0008150 GO:0008289 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009506 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009737 GO:0010029 GO:0010033 GO:0010035 GO:0016020 GO:0016151 GO:0019898 GO:0030054 GO:0031210 GO:0031647 GO:0033993 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048580 GO:0050789 GO:0050793 GO:0050821 GO:0050896 GO:0050997 GO:0051239 GO:0055044 GO:0065007 GO:0065008 GO:0070405 GO:0072341 GO:0090559 GO:0097305 GO:1900140 GO:1901700 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dehydrin

Protein Analysis

285

Amino Acids

32.84

Weight (kDa)

5.27

Isoelectric Point (pI)

53.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dehydrin	PF00257	92 - 209	1.4e-17	Dehydrin
Dehydrin	PF00257	219 - 264	1.3e-07	Dehydrin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20440 AT1G20450 AT1G20450 AT1G76180 AT1G76180
fragaria_vesca	FvH4_2g37690
malus_domestica	MD08G1004500.v1.1 MD15G1003900.v1.1
prunus_persica	Prupe.1G356400_v2.0.a1
pyrus_communis	pycom15g00280
rosa_chinensis	RchiOBHm_Chr6g0304041
rosa_laevigata	RLG00000011023
rosa_multiflora	Rmu_sc0003805.1_g000015
rosa_roxburghii	Rroxscaffold_7G00164160
rosa_rugosa	Rorug06G0327200
rosa_samantha	Rh6AG441000 Rh6BG461800 Rh6CG453200 Rh6DG440500
rosa_wichuraiana	Rw6G038210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	482
Acc65I	GGTACC	1 cut(s)	786
AccB1I	GGYRCC	1 cut(s)	786
AccII	CGCG	1 cut(s)	96
AciI	CCGC	3 cut(s)	5, 96, 125
AclWI	GGATC	2 cut(s)	76, 99
AcoI	YGGCCR	1 cut(s)	622
AfaI	GTAC	6 cut(s)	14, 38, 257, 503, 665, 788
AfiI	CCNNNNNNNGG	1 cut(s)	577
AgeI	ACCGGT	1 cut(s)	703
AgsI	TTSAA	2 cut(s)	354, 412
AjnI	CCWGG	2 cut(s)	619, 781
AluBI	AGCT	8 cut(s)	167, 342, 348, 527, 533, 616, 725, 778
AluI	AGCT	8 cut(s)	167, 342, 348, 527, 533, 616, 725, 778
Alw26I	GTCTC	1 cut(s)	77
AlwI	GGATC	2 cut(s)	76, 99
AoxI	GGCC	1 cut(s)	622
ApeKI	GCWGC	2 cut(s)	339, 656
AsiGI	ACCGGT	1 cut(s)	703
Asp700I	GAANNNNTTC	3 cut(s)	590, 615, 777
Asp718I	GGTACC	1 cut(s)	786
AsuHPI	GGTGA	4 cut(s)	199, 317, 452, 539
BalI	TGGCCA	1 cut(s)	624
BanI	GGYRCC	1 cut(s)	786
BanII	GRGCYC	2 cut(s)	561, 738
BauI	CACGAG	2 cut(s)	32, 302
BbsI	GAAGAC	2 cut(s)	53, 638
BbvI	GCAGC	2 cut(s)	351, 643
BccI	CCATC	1 cut(s)	552
BceAI	ACGGC	1 cut(s)	495
BcgI	CGANNNNNNTGC	2 cut(s)	671, 705
BciT130I	CCWGG	2 cut(s)	621, 783
BciVI	GTATCC	1 cut(s)	832
BclI	TGATCA	2 cut(s)	250, 445
BcoDI	GTCTC	1 cut(s)	77
BfaI	CTAG	1 cut(s)	345
BfuI	GTATCC	1 cut(s)	832
BglII	AGATCT	2 cut(s)	219, 432
BisI	GCNGC	2 cut(s)	340, 657
BlsI	GCNGC	2 cut(s)	341, 658
Bme1390I	CCNGG	2 cut(s)	621, 783
BmiI	GGNNCC	4 cut(s)	246, 645, 699, 788
BmrFI	CCNGG	2 cut(s)	621, 783
BmrI	ACTGGG	2 cut(s)	60, 482
BmuI	ACTGGG	2 cut(s)	60, 482
BpiI	GAAGAC	2 cut(s)	53, 638
BplI	GAGNNNNNCTC	2 cut(s)	419, 451
BpmI	CTGGAG	1 cut(s)	513
BsaI	GGTCTC	1 cut(s)	77
BsaJI	CCNNGG	5 cut(s)	87, 693, 738, 782, 801
BsaWI	WCCGGW	3 cut(s)	437, 535, 703
BsaXI	ACNNNNNCTCC	2 cut(s)	485, 515
Bsc4I	CCNNNNNNNGG	1 cut(s)	577
Bse118I	RCCGGY	1 cut(s)	703
Bse1I	ACTGG	4 cut(s)	55, 246, 488, 647
BseBI	CCWGG	2 cut(s)	621, 783
BseDI	CCNNGG	5 cut(s)	87, 693, 738, 782, 801
BseLI	CCNNNNNNNGG	1 cut(s)	577
BseMII	CTCAG	3 cut(s)	189, 567, 627
BseNI	ACTGG	4 cut(s)	55, 246, 488, 647
BseRI	GAGGAG	7 cut(s)	23, 170, 194, 197, 377, 521, 653
BseXI	GCAGC	2 cut(s)	351, 643
BsgI	GTGCAG	1 cut(s)	96
Bsh1236I	CGCG	1 cut(s)	96
BshFI	GGCC	1 cut(s)	624
BshNI	GGYRCC	1 cut(s)	786
BshTI	ACCGGT	1 cut(s)	703
BsiSI	CCGG	3 cut(s)	438, 536, 704
BsiWI	CGTACG	1 cut(s)	663
BslFI	GGGAC	1 cut(s)	470
BslI	CCNNNNNNNGG	1 cut(s)	577
BsmAI	GTCTC	1 cut(s)	77
BsmFI	GGGAC	1 cut(s)	470
BsnI	GGCC	1 cut(s)	624
Bso31I	GGTCTC	1 cut(s)	77
Bsp1286I	GDGCHC	2 cut(s)	561, 738
BspACI	CCGC	3 cut(s)	5, 96, 125
BspANI	GGCC	1 cut(s)	624
BspCNI	CTCAG	3 cut(s)	190, 568, 628
BspFNI	CGCG	1 cut(s)	96
BspHI	TCATGA	1 cut(s)	232
BspLI	GGNNCC	4 cut(s)	246, 645, 699, 788
BspPI	GGATC	2 cut(s)	76, 99
BspQI	GCTCTTC	3 cut(s)	355, 549, 726
BspT107I	GGYRCC	1 cut(s)	786
BspTNI	GGTCTC	1 cut(s)	77
BsrFI	RCCGGY	1 cut(s)	703
BsrI	ACTGG	4 cut(s)	55, 246, 488, 647
BssAI	RCCGGY	1 cut(s)	703
BssECI	CCNNGG	5 cut(s)	87, 693, 738, 782, 801
BssSI	CACGAG	2 cut(s)	32, 302
BssT1I	CCWWGG	2 cut(s)	87, 738
Bst2BI	CACGAG	2 cut(s)	32, 302
Bst2UI	CCWGG	2 cut(s)	621, 783
Bst6I	CTCTTC	5 cut(s)	276, 355, 369, 549, 726
BstC8I	GCNNGC	3 cut(s)	79, 165, 727
BstDEI	CTNAG	3 cut(s)	198, 576, 636
BstDSI	CCRYGG	1 cut(s)	693
BstFNI	CGCG	1 cut(s)	96
BstMAI	GTCTC	1 cut(s)	77
BstMWI	GCNNNNNNNGC	2 cut(s)	345, 354
BstNI	CCWGG	2 cut(s)	621, 783
BstSCI	CCNGG	2 cut(s)	619, 781
BstUI	CGCG	1 cut(s)	96
BstV1I	GCAGC	2 cut(s)	351, 643
BstV2I	GAAGAC	2 cut(s)	53, 638
BstX2I	RGATCY	3 cut(s)	68, 219, 432
BstYI	RGATCY	3 cut(s)	68, 219, 432
BsuI	GTATCC	1 cut(s)	832
BsuRI	GGCC	1 cut(s)	624
BtgI	CCRYGG	1 cut(s)	693
BtgZI	GCGATG	1 cut(s)	372
BtsIMutI	CAGTG	4 cut(s)	195, 239, 495, 561
Cac8I	GCNNGC	3 cut(s)	79, 165, 727
CciI	TCATGA	1 cut(s)	232
Cfr10I	RCCGGY	1 cut(s)	703
Csp6I	GTAC	6 cut(s)	13, 37, 256, 502, 664, 787
CspAI	ACCGGT	1 cut(s)	703
CviAII	CATG	3 cut(s)	152, 233, 689
CviQI	GTAC	6 cut(s)	13, 37, 256, 502, 664, 787
DdeI	CTNAG	3 cut(s)	198, 576, 636
DrdI	GACNNNNNNGTC	1 cut(s)	482
DseDI	GACNNNNNNGTC	1 cut(s)	482
EaeI	YGGCCR	1 cut(s)	622
Eam1104I	CTCTTC	5 cut(s)	276, 355, 369, 549, 726
EarI	CTCTTC	5 cut(s)	276, 355, 369, 549, 726
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	2 cut(s)	87, 738
Eco24I	GRGCYC	2 cut(s)	561, 738
Eco31I	GGTCTC	1 cut(s)	77
EcoRII	CCWGG	2 cut(s)	619, 781
EcoT14I	CCWWGG	2 cut(s)	87, 738
EcoT38I	GRGCYC	2 cut(s)	561, 738
ErhI	CCWWGG	2 cut(s)	87, 738
FaeI	CATG	3 cut(s)	155, 236, 692
FaiI	YATR	6 cut(s)	153, 234, 268, 690, 720, 758
FaqI	GGGAC	1 cut(s)	470
FatI	CATG	3 cut(s)	151, 232, 688
FauI	CCCGC	1 cut(s)	89
FbaI	TGATCA	2 cut(s)	250, 445
Fnu4HI	GCNGC	2 cut(s)	340, 657
FriOI	GRGCYC	2 cut(s)	561, 738
Fsp4HI	GCNGC	2 cut(s)	340, 657
FspBI	CTAG	1 cut(s)	345
GluI	GCNGC	2 cut(s)	340, 657
GsuI	CTGGAG	1 cut(s)	513
HaeIII	GGCC	1 cut(s)	624
HapII	CCGG	3 cut(s)	438, 536, 704
Hin1II	CATG	3 cut(s)	155, 236, 692
HindIII	AAGCTT	2 cut(s)	614, 776
HinfI	GANTC	2 cut(s)	307, 676
HpaII	CCGG	3 cut(s)	438, 536, 704
HphI	GGTGA	4 cut(s)	199, 317, 452, 539
Hpy166II	GTNNAC	2 cut(s)	258, 502
Hpy188I	TCNGA	1 cut(s)	226
Hpy188III	TCNNGA	4 cut(s)	176, 233, 248, 680
Hpy8I	GTNNAC	2 cut(s)	258, 502
HpyAV	CCTTC	8 cut(s)	59, 397, 406, 452, 580, 742, 829, 855
HpyCH4V	TGCA	2 cut(s)	77, 316
HpyF10VI	GCNNNNNNNGC	2 cut(s)	345, 354
HpyF3I	CTNAG	3 cut(s)	198, 576, 636
Hsp92II	CATG	3 cut(s)	155, 236, 692
KpnI	GGTACC	1 cut(s)	790
Ksp22I	TGATCA	2 cut(s)	250, 445
LguI	GCTCTTC	3 cut(s)	355, 549, 726
LmnI	GCTCC	4 cut(s)	250, 532, 538, 697
Lsp1109I	GCAGC	2 cut(s)	351, 643
MaeI	CTAG	1 cut(s)	345
MaeIII	GTNAC	2 cut(s)	193, 677
MflI	RGATCY	3 cut(s)	68, 219, 432
MhlI	GDGCHC	2 cut(s)	561, 738
MlsI	TGGCCA	1 cut(s)	624
MluNI	TGGCCA	1 cut(s)	624
MlyI	GAGTC	1 cut(s)	685
Mox20I	TGGCCA	1 cut(s)	624
MroXI	GAANNNNTTC	3 cut(s)	590, 615, 777
MscI	TGGCCA	1 cut(s)	624
MseI	TTAA	1 cut(s)	853
Msp20I	TGGCCA	1 cut(s)	624
MspI	CCGG	3 cut(s)	438, 536, 704
MspR9I	CCNGG	2 cut(s)	621, 783
MvaI	CCWGG	2 cut(s)	621, 783
MvnI	CGCG	1 cut(s)	96
MwoI	GCNNNNNNNGC	2 cut(s)	345, 354
NlaIII	CATG	3 cut(s)	155, 236, 692
NlaIV	GGNNCC	4 cut(s)	246, 645, 699, 788
NmuCI	GTSAC	2 cut(s)	193, 677
PagI	TCATGA	1 cut(s)	232
PciSI	GCTCTTC	3 cut(s)	355, 549, 726
PdmI	GAANNNNTTC	3 cut(s)	590, 615, 777
PfeI	GAWTC	1 cut(s)	307
Pfl23II	CGTACG	1 cut(s)	663
PinAI	ACCGGT	1 cut(s)	703
PkrI	GCNGC	2 cut(s)	341, 658
PleI	GAGTC	1 cut(s)	684
PpsI	GAGTC	1 cut(s)	684
Psp6I	CCWGG	2 cut(s)	619, 781
PspGI	CCWGG	2 cut(s)	619, 781
PspLI	CGTACG	1 cut(s)	663
PspN4I	GGNNCC	4 cut(s)	246, 645, 699, 788
PsuI	RGATCY	3 cut(s)	68, 219, 432
RsaI	GTAC	6 cut(s)	14, 38, 257, 503, 665, 788
RsaNI	GTAC	6 cut(s)	13, 37, 256, 502, 664, 787
SapI	GCTCTTC	3 cut(s)	355, 549, 726
SaqAI	TTAA	1 cut(s)	853
SatI	GCNGC	2 cut(s)	340, 657
SchI	GAGTC	1 cut(s)	685
ScrFI	CCNGG	2 cut(s)	621, 783
SduI	GDGCHC	2 cut(s)	561, 738
SgrAI	CRCCGGYG	1 cut(s)	703
SsiI	CCGC	3 cut(s)	5, 96, 125
SspMI	CTAG	1 cut(s)	345
StyD4I	CCNGG	2 cut(s)	619, 781
StyI	CCWWGG	2 cut(s)	87, 738
TaqI	TCGA	1 cut(s)	597
TaqII	GACCGA	1 cut(s)	815
TatI	WGTACW	2 cut(s)	12, 255
TfiI	GAWTC	1 cut(s)	307
Tru1I	TTAA	1 cut(s)	853
Tru9I	TTAA	1 cut(s)	853
TscAI	CASTG	4 cut(s)	202, 246, 495, 568
TseFI	GTSAC	2 cut(s)	193, 677
TseI	GCWGC	2 cut(s)	339, 656
Tsp45I	GTSAC	2 cut(s)	193, 677
TspDTI	ATGAA	2 cut(s)	387, 735
TspGWI	ACGGA	1 cut(s)	710
TspRI	CASTG	4 cut(s)	202, 246, 495, 568
XmnI	GAANNNNTTC	3 cut(s)	590, 615, 777
XspI	CTAG	1 cut(s)	345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.