Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0010925

Physical Location & Seq

Genomic Coordinates Reverse (-)

61671519 .. 61672449

Gene Structure 931 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG440500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGCTGGTGAGTACAACAAAAGCCACGAGTACGAGACCAAGGCCGAGGAGGGCGGTCCAGTTGAGACCCAGGATCGTGGGTTATTTGATTTCTTGGGTAAGAAGAAGGAGGAGGAGAAGCCTATTCATCCTGAACAGGAGGAGGCGATTGTCACCGACTTCGAGAAAGTCAAGGTGTCTGAGCCTGAGCCAGCTTATGTAGACTACAGCAAACCTGCAGAGCATGGTTATCATAAGGAGGAGGAGGAGGTGGAGAAGAAGCACGAAACTCTATCCGAGAAGCTTCGCCGATCCGACAGCAGCTCTAGCTCGTCTAGCGACGAGGAAGGAGACGACGAAGAGAAAAAACAGAAGAGGAAGGAGAGGAAGGAGAAGAAGGGACTGAAGGAAAAGATCAAGGAGAAGATCCCCGGCGACAAAGAAGAAGAGAAGAAACACGGCTACGAGCAGGACACTGAGATCCCGGTGGAGAAGTTCCACGAGGAACACGGCCATCCCTACGATCACGGCCCAGTCGTCCACCACCATGAGGAGCCAAAAGTTGAACCAACTGCTGTGTACGGAGAGGAGGAGAAGAAAGAGGACGAGAAGAAGGGTTTCCTTGAGAAGATCAAGGACAAGCTTCCCGGACACAAGAAGCCAGAGGATGGTCCTGTTGCGTCTCCACCACCGCCGGAGTATGAAAATGTTGAGCCTGCTCATGAAGGTGAGGTGAAGGAGAAGAAGGGTTTATTGGAGAAGATCAAGGAGAAGATTCCCGGGTACCATCCCAAGACTGAGGAAGAGAAGGAGAAGGAAAAGGAGAAAGAGAAGCCAACTGGTTCTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001786 GO:0003674 GO:0003779 GO:0005488 GO:0005507 GO:0005515 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005911 GO:0006950 GO:0008092 GO:0008150 GO:0008289 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009506 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009737 GO:0010029 GO:0010033 GO:0010035 GO:0016020 GO:0016151 GO:0019898 GO:0030054 GO:0031210 GO:0031647 GO:0033993 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048580 GO:0050789 GO:0050793 GO:0050821 GO:0050896 GO:0050997 GO:0051239 GO:0055044 GO:0065007 GO:0065008 GO:0070405 GO:0072341 GO:0090559 GO:0097305 GO:1900140 GO:1901700 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dehydrin

Protein Analysis

276

Amino Acids

31.96

Weight (kDa)

5.25

Isoelectric Point (pI)

54.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dehydrin	PF00257	69 - 211	2.9e-17	Dehydrin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20440 AT1G20450 AT1G20450 AT1G76180 AT1G76180
fragaria_vesca	FvH4_2g37690
malus_domestica	MD08G1004500.v1.1 MD15G1003900.v1.1
prunus_persica	Prupe.1G356400_v2.0.a1
pyrus_communis	pycom15g00280
rosa_chinensis	RchiOBHm_Chr6g0304041
rosa_laevigata	RLG00000011023
rosa_multiflora	Rmu_sc0003805.1_g000015
rosa_roxburghii	Rroxscaffold_7G00164160
rosa_rugosa	Rorug06G0327200
rosa_samantha	Rh6AG441000 Rh6BG461800 Rh6CG453200 Rh6DG440500
rosa_wichuraiana	Rw6G038210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	223
Acc65I	GGTACC	1 cut(s)	762
AccB1I	GGYRCC	1 cut(s)	762
AccB7I	CCANNNNNTGG	1 cut(s)	647
AccI	GTMKAC	1 cut(s)	201
AciI	CCGC	2 cut(s)	54, 671
AclWI	GGATC	4 cut(s)	81, 285, 400, 454
AcoI	YGGCCR	1 cut(s)	490
AcuI	CTGAAG	1 cut(s)	404
AfaI	GTAC	4 cut(s)	14, 32, 560, 764
AfiI	CCNNNNNNNGG	2 cut(s)	529, 647
AgsI	TTSAA	1 cut(s)	545
AjnI	CCWGG	1 cut(s)	69
AjuI	GAANNNNNNNTTGG	2 cut(s)	716, 748
AluBI	AGCT	5 cut(s)	194, 283, 303, 309, 622
AluI	AGCT	5 cut(s)	194, 283, 303, 309, 622
Alw26I	GTCTC	4 cut(s)	29, 59, 324, 666
AlwI	GGATC	4 cut(s)	81, 285, 400, 454
Ama87I	CYCGRG	1 cut(s)	758
AoxI	GGCC	3 cut(s)	42, 490, 508
ApeKI	GCWGC	1 cut(s)	300
Asp700I	GAANNNNTTC	1 cut(s)	596
Asp718I	GGTACC	1 cut(s)	762
AspS9I	GGNCC	3 cut(s)	56, 509, 650
AsuC2I	CCSGG	5 cut(s)	411, 464, 627, 759, 760
AsuHPI	GGTGA	4 cut(s)	20, 145, 719, 724
AvaI	CYCGRG	1 cut(s)	758
AvaII	GGWCC	2 cut(s)	56, 650
BanI	GGYRCC	1 cut(s)	762
BauI	CACGAG	2 cut(s)	26, 479
BbvI	GCAGC	1 cut(s)	312
BccI	CCATC	3 cut(s)	501, 641, 774
BceAI	ACGGC	3 cut(s)	454, 505, 523
BciT130I	CCWGG	1 cut(s)	71
BcnI	CCSGG	5 cut(s)	411, 464, 627, 759, 760
BcoDI	GTCTC	4 cut(s)	29, 59, 324, 666
BfaI	CTAG	2 cut(s)	306, 315
BfmI	CTRYAG	2 cut(s)	205, 216
BfuAI	ACCTGC	1 cut(s)	223
BisI	GCNGC	1 cut(s)	301
BlsI	GCNGC	1 cut(s)	302
Bme1390I	CCNGG	6 cut(s)	71, 411, 464, 627, 759, 760
Bme18I	GGWCC	2 cut(s)	56, 650
BmeT110I	CYCGRG	1 cut(s)	758
BmgT120I	GGNCC	3 cut(s)	56, 509, 650
BmiI	GGNNCC	2 cut(s)	534, 764
BmrFI	CCNGG	6 cut(s)	71, 411, 464, 627, 759, 760
BmrI	ACTGGG	1 cut(s)	506
BmuI	ACTGGG	1 cut(s)	506
Bpu10I	CCTNAGC	1 cut(s)	186
BpuEI	CTTGAG	1 cut(s)	623
BpuMI	CCSGG	5 cut(s)	411, 464, 627, 759, 760
BsaI	GGTCTC	2 cut(s)	29, 59
BsaJI	CCNNGG	5 cut(s)	39, 45, 69, 409, 758
Bsc4I	CCNNNNNNNGG	2 cut(s)	529, 647
Bse1I	ACTGG	3 cut(s)	59, 512, 823
BseBI	CCWGG	1 cut(s)	71
BseDI	CCNNGG	5 cut(s)	39, 45, 69, 409, 758
BseGI	GGATG	4 cut(s)	127, 493, 652, 766
BseLI	CCNNNNNNNGG	2 cut(s)	529, 647
BseMII	CTCAG	4 cut(s)	171, 177, 447, 768
BseNI	ACTGG	3 cut(s)	59, 512, 823
BseXI	GCAGC	1 cut(s)	312
BshFI	GGCC	3 cut(s)	44, 492, 510
BshNI	GGYRCC	1 cut(s)	762
BsiHKCI	CYCGRG	1 cut(s)	758
BsiSI	CCGG	5 cut(s)	411, 464, 627, 674, 759
BslFI	GGGAC	1 cut(s)	393
BslI	CCNNNNNNNGG	2 cut(s)	529, 647
BsmAI	GTCTC	4 cut(s)	29, 59, 324, 666
BsmBI	CGTCTC	2 cut(s)	324, 666
BsmFI	GGGAC	1 cut(s)	393
BsnI	GGCC	3 cut(s)	44, 492, 510
Bso31I	GGTCTC	2 cut(s)	29, 59
BsoBI	CYCGRG	1 cut(s)	758
Bsp143I	GATC	8 cut(s)	73, 290, 393, 405, 459, 502, 609, 741
BspACI	CCGC	2 cut(s)	54, 671
BspANI	GGCC	3 cut(s)	44, 492, 510
BspCNI	CTCAG	4 cut(s)	172, 178, 448, 769
BspHI	TCATGA	1 cut(s)	700
BspLI	GGNNCC	2 cut(s)	534, 764
BspMAI	CTGCAG	1 cut(s)	220
BspMI	ACCTGC	1 cut(s)	223
BspPI	GGATC	4 cut(s)	81, 285, 400, 454
BspT107I	GGYRCC	1 cut(s)	762
BspTNI	GGTCTC	2 cut(s)	29, 59
BsrI	ACTGG	3 cut(s)	59, 512, 823
BssECI	CCNNGG	5 cut(s)	39, 45, 69, 409, 758
BssMI	GATC	8 cut(s)	73, 290, 393, 405, 459, 502, 609, 741
BssSI	CACGAG	2 cut(s)	26, 479
BssT1I	CCWWGG	1 cut(s)	39
Bst2BI	CACGAG	2 cut(s)	26, 479
Bst2UI	CCWGG	1 cut(s)	71
Bst6I	CTCTTC	4 cut(s)	333, 347, 420, 777
BstC8I	GCNNGC	2 cut(s)	192, 696
BstDEI	CTNAG	4 cut(s)	180, 186, 456, 777
BstF5I	GGATG	4 cut(s)	127, 493, 652, 766
BstKTI	GATC	8 cut(s)	76, 293, 396, 408, 462, 505, 612, 744
BstMAI	GTCTC	4 cut(s)	29, 59, 324, 666
BstMBI	GATC	8 cut(s)	73, 290, 393, 405, 459, 502, 609, 741
BstMWI	GCNNNNNNNGC	2 cut(s)	306, 315
BstNI	CCWGG	1 cut(s)	71
BstSCI	CCNGG	6 cut(s)	69, 409, 462, 625, 757, 758
BstSFI	CTRYAG	2 cut(s)	205, 216
BstV1I	GCAGC	1 cut(s)	312
BstX2I	RGATCY	2 cut(s)	405, 459
BstXI	CCANNNNNNTGG	1 cut(s)	77
BstYI	RGATCY	2 cut(s)	405, 459
BsuRI	GGCC	3 cut(s)	44, 492, 510
BtsCI	GGATG	4 cut(s)	127, 493, 652, 766
BtsIMutI	CAGTG	1 cut(s)	453
BveI	ACCTGC	1 cut(s)	223
Cac8I	GCNNGC	2 cut(s)	192, 696
CciI	TCATGA	1 cut(s)	700
Cfr13I	GGNCC	3 cut(s)	56, 509, 650
Cfr9I	CCCGGG	1 cut(s)	758
CseI	GACGC	1 cut(s)	648
Csp6I	GTAC	4 cut(s)	13, 31, 559, 763
CviAII	CATG	3 cut(s)	224, 527, 701
CviQI	GTAC	4 cut(s)	13, 31, 559, 763
DdeI	CTNAG	4 cut(s)	180, 186, 456, 777
DpnI	GATC	8 cut(s)	75, 292, 395, 407, 461, 504, 611, 743
DpnII	GATC	8 cut(s)	73, 290, 393, 405, 459, 502, 609, 741
EaeI	YGGCCR	1 cut(s)	490
Eam1104I	CTCTTC	4 cut(s)	333, 347, 420, 777
EarI	CTCTTC	4 cut(s)	333, 347, 420, 777
Eco130I	CCWWGG	1 cut(s)	39
Eco31I	GGTCTC	2 cut(s)	29, 59
Eco47I	GGWCC	2 cut(s)	56, 650
Eco57I	CTGAAG	1 cut(s)	404
Eco88I	CYCGRG	1 cut(s)	758
EcoRII	CCWGG	1 cut(s)	69
EcoT14I	CCWWGG	1 cut(s)	39
ErhI	CCWWGG	1 cut(s)	39
Esp3I	CGTCTC	2 cut(s)	324, 666
FaeI	CATG	3 cut(s)	227, 530, 704
FaiI	YATR	6 cut(s)	198, 225, 234, 528, 681, 702
FaqI	GGGAC	1 cut(s)	393
FatI	CATG	3 cut(s)	223, 526, 700
FblI	GTMKAC	1 cut(s)	201
Fnu4HI	GCNGC	1 cut(s)	301
FokI	GGATG	4 cut(s)	114, 480, 659, 753
Fsp4HI	GCNGC	1 cut(s)	301
FspBI	CTAG	2 cut(s)	306, 315
GluI	GCNGC	1 cut(s)	301
HaeIII	GGCC	3 cut(s)	44, 492, 510
HapII	CCGG	5 cut(s)	411, 464, 627, 674, 759
HgaI	GACGC	1 cut(s)	648
Hin1II	CATG	3 cut(s)	227, 530, 704
HindIII	AAGCTT	2 cut(s)	281, 620
HinfI	GANTC	1 cut(s)	754
HpaII	CCGG	5 cut(s)	411, 464, 627, 674, 759
HphI	GGTGA	4 cut(s)	20, 145, 719, 724
Hpy166II	GTNNAC	3 cut(s)	202, 520, 559
Hpy188I	TCNGA	3 cut(s)	181, 277, 295
Hpy188III	TCNNGA	3 cut(s)	131, 163, 701
Hpy8I	GTNNAC	3 cut(s)	202, 520, 559
Hpy99I	CGWCG	2 cut(s)	323, 338
HpyCH4V	TGCA	1 cut(s)	218
HpyF10VI	GCNNNNNNNGC	2 cut(s)	306, 315
HpyF3I	CTNAG	4 cut(s)	180, 186, 456, 777
Hsp92II	CATG	3 cut(s)	227, 530, 704
KpnI	GGTACC	1 cut(s)	766
Kzo9I	GATC	8 cut(s)	73, 290, 393, 405, 459, 502, 609, 741
LmnI	GCTCC	1 cut(s)	532
Lsp1109I	GCAGC	1 cut(s)	312
MaeI	CTAG	2 cut(s)	306, 315
MaeIII	GTNAC	1 cut(s)	151
MalI	GATC	8 cut(s)	75, 292, 395, 407, 461, 504, 611, 743
MboI	GATC	8 cut(s)	73, 290, 393, 405, 459, 502, 609, 741
MflI	RGATCY	2 cut(s)	405, 459
MmeI	TCCRAC	1 cut(s)	318
MroXI	GAANNNNTTC	1 cut(s)	596
MslI	CAYNNNNRTG	2 cut(s)	525, 705
MspI	CCGG	5 cut(s)	411, 464, 627, 674, 759
MspR9I	CCNGG	6 cut(s)	71, 411, 464, 627, 759, 760
MvaI	CCWGG	1 cut(s)	71
MwoI	GCNNNNNNNGC	2 cut(s)	306, 315
NciI	CCSGG	5 cut(s)	411, 464, 627, 759, 760
NdeII	GATC	8 cut(s)	73, 290, 393, 405, 459, 502, 609, 741
NlaIII	CATG	3 cut(s)	227, 530, 704
NlaIV	GGNNCC	2 cut(s)	534, 764
NmeAIII	GCCGAG	1 cut(s)	70
NmuCI	GTSAC	1 cut(s)	151
PagI	TCATGA	1 cut(s)	700
PcsI	WCGNNNNNNNCGW	1 cut(s)	513
PdmI	GAANNNNTTC	1 cut(s)	596
PfeI	GAWTC	1 cut(s)	754
PflMI	CCANNNNNTGG	1 cut(s)	647
PfoI	TCCNGGA	1 cut(s)	625
PkrI	GCNGC	1 cut(s)	302
Psp6I	CCWGG	1 cut(s)	69
PspGI	CCWGG	1 cut(s)	69
PspN4I	GGNNCC	2 cut(s)	534, 764
PspPI	GGNCC	3 cut(s)	56, 509, 650
PstI	CTGCAG	1 cut(s)	220
PsuI	RGATCY	2 cut(s)	405, 459
RsaI	GTAC	4 cut(s)	14, 32, 560, 764
RsaNI	GTAC	4 cut(s)	13, 31, 559, 763
RseI	CAYNNNNRTG	2 cut(s)	525, 705
SatI	GCNGC	1 cut(s)	301
Sau3AI	GATC	8 cut(s)	73, 290, 393, 405, 459, 502, 609, 741
Sau96I	GGNCC	3 cut(s)	56, 509, 650
ScrFI	CCNGG	6 cut(s)	71, 411, 464, 627, 759, 760
SfcI	CTRYAG	2 cut(s)	205, 216
SinI	GGWCC	2 cut(s)	56, 650
SmaI	CCCGGG	1 cut(s)	760
SmiMI	CAYNNNNRTG	2 cut(s)	525, 705
SmlI	CTYRAG	1 cut(s)	602
SmoI	CTYRAG	1 cut(s)	602
SsiI	CCGC	2 cut(s)	54, 671
SspMI	CTAG	2 cut(s)	306, 315
StyD4I	CCNGG	6 cut(s)	69, 409, 462, 625, 757, 758
StyI	CCWWGG	1 cut(s)	39
TaqI	TCGA	1 cut(s)	162
TatI	WGTACW	1 cut(s)	12
TfiI	GAWTC	1 cut(s)	754
TscAI	CASTG	1 cut(s)	460
TseFI	GTSAC	1 cut(s)	151
TseI	GCWGC	1 cut(s)	300
Tsp45I	GTSAC	1 cut(s)	151
TspDTI	ATGAA	3 cut(s)	116, 696, 717
TspGWI	ACGGA	1 cut(s)	576
TspMI	CCCGGG	1 cut(s)	758
TspRI	CASTG	1 cut(s)	460
Van91I	CCANNNNNTGG	1 cut(s)	647
VpaK11BI	GGWCC	2 cut(s)	56, 650
XmaI	CCCGGG	1 cut(s)	758
XmiI	GTMKAC	1 cut(s)	201
XmnI	GAANNNNTTC	1 cut(s)	596
XspI	CTAG	2 cut(s)	306, 315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.