Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0010925

Physical Location & Seq

Genomic Coordinates Reverse (-)

47987593 .. 47999537

Gene Structure 11945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0327200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGCCGGAACTTGGGTTTGCGCCTGAGGATGAGGATAGGTGGGTGGCTTCATTTAGTAGTGGTTGGCAGATGAGGATGTCACTTGGGAAGATTTTGCTTCAGTGGGAGAAGAGAGGCAGCAGCCAATCCAAGCGGATATTGATCAAGTGCGAAATGAGTGGGGGAACTCAACATACAACAGCTTCAAAACTAGCATTGTTGTCTGAAGGCAGCGCTGCATCTGTTACGCAGCTGCGCCTGGCATCTGCCGAGCCACCTGCCGAGTATCACACAACAGACAACTGTTTTCCACCGCTGTCTGAATTTTCAACAGACAACGGCTCGCTCTACAGCGGGTGGCACTCCAAATCACACAATAGGATGGCAAAAATCCCCAGCGGGGCAGAGCTTCATTGGATACCCGCCCCTAATGGGGGGAGAATTCGGGGACAAATGGGGAATGGGCATGGGGATCCCAAATCCCCGCTATCTAAGATTGGGGATGGGGCGGGGATGGTATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001786 GO:0003674 GO:0003779 GO:0005488 GO:0005507 GO:0005515 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005911 GO:0006950 GO:0008092 GO:0008150 GO:0008289 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009506 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009737 GO:0010029 GO:0010033 GO:0010035 GO:0016020 GO:0016151 GO:0019898 GO:0030054 GO:0031210 GO:0031647 GO:0033993 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048580 GO:0050789 GO:0050793 GO:0050821 GO:0050896 GO:0050997 GO:0051239 GO:0055044 GO:0065007 GO:0065008 GO:0070405 GO:0072341 GO:0090559 GO:0097305 GO:1900140 GO:1901700 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dehydrin

Protein Analysis

167

Amino Acids

18.02

Weight (kDa)

7.85

Isoelectric Point (pI)

49.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20440 AT1G20450 AT1G20450 AT1G76180 AT1G76180
fragaria_vesca	FvH4_2g37690
malus_domestica	MD08G1004500.v1.1 MD15G1003900.v1.1
prunus_persica	Prupe.1G356400_v2.0.a1
pyrus_communis	pycom15g00280
rosa_chinensis	RchiOBHm_Chr6g0304041
rosa_laevigata	RLG00000011023
rosa_multiflora	Rmu_sc0003805.1_g000015
rosa_roxburghii	Rroxscaffold_7G00164160
rosa_rugosa	Rorug06G0327200
rosa_samantha	Rh6AG441000 Rh6BG461800 Rh6CG453200 Rh6DG440500
rosa_wichuraiana	Rw6G038210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	265
Acc36I	ACCTGC	1 cut(s)	265
AciI	CCGC	7 cut(s)	133, 293, 333, 378, 402, 464, 488
AclWI	GGATC	2 cut(s)	446, 459
AcsI	RAATTY	2 cut(s)	302, 420
AcuI	CTGAAG	2 cut(s)	83, 225
AfeI	AGCGCT	1 cut(s)	214
AfiI	CCNNNNNNNGG	5 cut(s)	11, 379, 411, 412, 413
AgsI	TTSAA	2 cut(s)	186, 309
AjnI	CCWGG	1 cut(s)	237
AluBI	AGCT	3 cut(s)	182, 232, 388
AluI	AGCT	3 cut(s)	182, 232, 388
AlwI	GGATC	2 cut(s)	446, 459
Aor51HI	AGCGCT	1 cut(s)	214
ApeKI	GCWGC	6 cut(s)	117, 120, 210, 215, 229, 232
ApoI	RAATTY	2 cut(s)	302, 420
AspLEI	GCGC	3 cut(s)	22, 215, 237
AxyI	CCTNAGG	1 cut(s)	24
BamHI	GGATCC	1 cut(s)	451
BbvI	GCAGC	6 cut(s)	129, 132, 202, 219, 222, 241
BccI	CCATC	3 cut(s)	355, 476, 487
BceAI	ACGGC	1 cut(s)	334
BcgI	CGANNNNNNTGC	2 cut(s)	239, 273
BciT130I	CCWGG	1 cut(s)	239
BciVI	GTATCC	1 cut(s)	390
BclI	TGATCA	1 cut(s)	141
BfaI	CTAG	1 cut(s)	191
BfmI	CTRYAG	1 cut(s)	328
BfoI	RGCGCY	1 cut(s)	216
BfuAI	ACCTGC	1 cut(s)	265
BfuI	GTATCC	1 cut(s)	390
BisI	GCNGC	6 cut(s)	118, 121, 211, 216, 230, 233
BlsI	GCNGC	6 cut(s)	119, 122, 212, 217, 231, 234
Bme1390I	CCNGG	1 cut(s)	239
BmiI	GGNNCC	1 cut(s)	453
BmrFI	CCNGG	1 cut(s)	239
BmsI	GCATC	2 cut(s)	227, 251
BsaBI	GATNNNNATC	1 cut(s)	140
Bsc4I	CCNNNNNNNGG	5 cut(s)	11, 379, 411, 412, 413
Bse21I	CCTNAGG	1 cut(s)	24
Bse8I	GATNNNNATC	1 cut(s)	140
BseBI	CCWGG	1 cut(s)	239
BseGI	GGATG	5 cut(s)	34, 81, 366, 487, 498
BseJI	GATNNNNATC	1 cut(s)	140
BseLI	CCNNNNNNNGG	5 cut(s)	11, 379, 411, 412, 413
BseMII	CTCAG	1 cut(s)	15
BseXI	GCAGC	6 cut(s)	129, 132, 202, 219, 222, 241
BseYI	CCCAGC	1 cut(s)	374
BsiSI	CCGG	1 cut(s)	5
BslFI	GGGAC	1 cut(s)	441
BslI	CCNNNNNNNGG	5 cut(s)	11, 379, 411, 412, 413
BsmFI	GGGAC	1 cut(s)	441
Bsp143I	GATC	2 cut(s)	141, 451
BspACI	CCGC	7 cut(s)	133, 293, 333, 378, 402, 464, 488
BspCNI	CTCAG	1 cut(s)	16
BspLI	GGNNCC	1 cut(s)	453
BspMI	ACCTGC	1 cut(s)	265
BspPI	GGATC	2 cut(s)	446, 459
BssMI	GATC	2 cut(s)	141, 451
Bst2UI	CCWGG	1 cut(s)	239
Bst4CI	ACNGT	1 cut(s)	284
Bst6I	CTCTTC	1 cut(s)	104
BstC8I	GCNNGC	1 cut(s)	323
BstDEI	CTNAG	2 cut(s)	24, 471
BstF5I	GGATG	5 cut(s)	34, 81, 366, 487, 498
BstH2I	RGCGCY	1 cut(s)	216
BstHHI	GCGC	3 cut(s)	22, 215, 237
BstKTI	GATC	2 cut(s)	144, 454
BstMBI	GATC	2 cut(s)	141, 451
BstNI	CCWGG	1 cut(s)	239
BstSCI	CCNGG	1 cut(s)	237
BstSFI	CTRYAG	1 cut(s)	328
BstV1I	GCAGC	6 cut(s)	129, 132, 202, 219, 222, 241
BstX2I	RGATCY	1 cut(s)	451
BstYI	RGATCY	1 cut(s)	451
Bsu36I	CCTNAGG	1 cut(s)	24
BsuI	GTATCC	1 cut(s)	390
BtsCI	GGATG	5 cut(s)	34, 81, 366, 487, 498
BtsIMutI	CAGTG	1 cut(s)	107
BveI	ACCTGC	1 cut(s)	265
Cac8I	GCNNGC	1 cut(s)	323
CfoI	GCGC	3 cut(s)	22, 215, 237
CviAII	CATG	1 cut(s)	446
CviJI	RGCY	7 cut(s)	47, 123, 182, 232, 253, 321, 388
CviKI_1	RGCY	7 cut(s)	47, 123, 182, 232, 253, 321, 388
DdeI	CTNAG	2 cut(s)	24, 471
DpnI	GATC	2 cut(s)	143, 453
DpnII	GATC	2 cut(s)	141, 451
Eam1104I	CTCTTC	1 cut(s)	104
EarI	CTCTTC	1 cut(s)	104
Eco47III	AGCGCT	1 cut(s)	214
Eco57I	CTGAAG	2 cut(s)	83, 225
Eco81I	CCTNAGG	1 cut(s)	24
EcoRI	GAATTC	1 cut(s)	420
EcoRII	CCWGG	1 cut(s)	237
FaeI	CATG	1 cut(s)	449
FaiI	YATR	2 cut(s)	174, 447
FaqI	GGGAC	1 cut(s)	441
FatI	CATG	1 cut(s)	445
FauI	CCCGC	5 cut(s)	326, 371, 409, 471, 481
FbaI	TGATCA	1 cut(s)	141
Fnu4HI	GCNGC	6 cut(s)	118, 121, 211, 216, 230, 233
FokI	GGATG	4 cut(s)	41, 88, 373, 494
Fsp4HI	GCNGC	6 cut(s)	118, 121, 211, 216, 230, 233
FspBI	CTAG	1 cut(s)	191
GlaI	GCGC	3 cut(s)	21, 214, 236
GluI	GCNGC	6 cut(s)	118, 121, 211, 216, 230, 233
GsaI	CCCAGC	1 cut(s)	378
HaeII	RGCGCY	1 cut(s)	216
HapII	CCGG	1 cut(s)	5
HhaI	GCGC	3 cut(s)	22, 215, 237
Hin1II	CATG	1 cut(s)	449
Hin6I	GCGC	3 cut(s)	20, 213, 235
HinP1I	GCGC	3 cut(s)	20, 213, 235
HpaII	CCGG	1 cut(s)	5
Hpy188I	TCNGA	2 cut(s)	205, 301
HpyAV	CCTTC	1 cut(s)	200
HpyCH4III	ACNGT	1 cut(s)	284
HpyCH4V	TGCA	1 cut(s)	218
HpyF3I	CTNAG	2 cut(s)	24, 471
Hsp92II	CATG	1 cut(s)	449
HspAI	GCGC	3 cut(s)	20, 213, 235
Ksp22I	TGATCA	1 cut(s)	141
Kzo9I	GATC	2 cut(s)	141, 451
LpnPI	CCDG	6 cut(s)	18, 36, 224, 251, 270, 388
Lsp1109I	GCAGC	6 cut(s)	129, 132, 202, 219, 222, 241
LweI	GCATC	2 cut(s)	227, 251
MaeI	CTAG	1 cut(s)	191
MaeIII	GTNAC	2 cut(s)	78, 223
MalI	GATC	2 cut(s)	143, 453
MboI	GATC	2 cut(s)	141, 451
MboII	GAAGA	2 cut(s)	100, 121
MflI	RGATCY	1 cut(s)	451
MluCI	AATT	2 cut(s)	302, 420
MnlI	CCTC	4 cut(s)	19, 25, 66, 107
MspA1I	CMGCKG	4 cut(s)	232, 295, 333, 378
MspI	CCGG	1 cut(s)	5
MspR9I	CCNGG	1 cut(s)	239
MvaI	CCWGG	1 cut(s)	239
NdeII	GATC	2 cut(s)	141, 451
NlaIII	CATG	1 cut(s)	449
NlaIV	GGNNCC	1 cut(s)	453
NmeAIII	GCCGAG	2 cut(s)	274, 286
NmuCI	GTSAC	1 cut(s)	78
PaqCI	CACCTGC	1 cut(s)	265
PkrI	GCNGC	6 cut(s)	119, 122, 212, 217, 231, 234
Psp6I	CCWGG	1 cut(s)	237
PspFI	CCCAGC	1 cut(s)	374
PspGI	CCWGG	1 cut(s)	237
PspN4I	GGNNCC	1 cut(s)	453
PsrI	GAACNNNNNNTAC	2 cut(s)	157, 189
PsuI	RGATCY	1 cut(s)	451
PvuII	CAGCTG	1 cut(s)	232
SatI	GCNGC	6 cut(s)	118, 121, 211, 216, 230, 233
Sau3AI	GATC	2 cut(s)	141, 451
ScrFI	CCNGG	1 cut(s)	239
SetI	ASST	5 cut(s)	41, 184, 234, 259, 390
SfaNI	GCATC	2 cut(s)	227, 251
SfcI	CTRYAG	1 cut(s)	328
Sse9I	AATT	2 cut(s)	302, 420
SsiI	CCGC	7 cut(s)	133, 293, 333, 378, 402, 464, 488
SspMI	CTAG	1 cut(s)	191
StyD4I	CCNGG	1 cut(s)	237
TaaI	ACNGT	1 cut(s)	284
TasI	AATT	2 cut(s)	302, 420
TscAI	CASTG	1 cut(s)	107
TseFI	GTSAC	1 cut(s)	78
TseI	GCWGC	6 cut(s)	117, 120, 210, 215, 229, 232
Tsp45I	GTSAC	1 cut(s)	78
TspDTI	ATGAA	2 cut(s)	39, 380
TspRI	CASTG	1 cut(s)	107
XapI	RAATTY	2 cut(s)	302, 420
XspI	CTAG	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.