Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0010925

Physical Location & Seq

Genomic Coordinates Forward (+)

27383776 .. 27385580

Gene Structure 1805 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g37690.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGCGGGTGAGTACAACAAAGGCCACGAGTACGAGACCAAGGCCGAGGAGGGCGGTCCAGTTGAGACCCAAGATCGTGGGATGTTTGATTTCTTGGGGAAGAAGAAGGAGGAGGAGAAGCCTGTTCATCATGAACAGATGGTCAGCGAGTTCGAGAAAGTCAAGGTGTCTGAGCCTGAGCCAGCTTATGTAGACTGCAGCAGCAAACCTGTTGAGCATGGCTATCATCACGAGGAACCTAAGGAGGAACATAAGAAGGAGGAGGAGAAGAAGCATGAAACTCTCTCCGAGAAGCTTCGCCGATCCGACAGCAGCTCCAGCTCGTCAAGTGACGAGGAAGGAGACGATGAAGAGAAAAAAAAGAAGAGGAAGGAGAAGAAGGGACTGAAGGAGAAGCTCAAGGAGAAGATCGCCGGCGACAAAGAAGAAGAAGAGAAGAAGAAACACGGCTACGAGCAGGACACTGAGGTCCCGGTGGAGAAGTTCCACGAGGAACAAGAACATCCCTACGATCACGGCCCGCACCACCATGAGGAGCCAAAAGTTGAGCCAACAGTAGCCTACACAGAGGAGCAGAAGAAGGAGGACGAGAAGAAGGGTTTCCTTGAGAAGATCAAGGACAAGCTTCCCGGACACAAGAAGCCGGAAGATGTTCCCGTTGCGTCTCCACCACCGCCGGAGTATGAAAATGTTGAGCCTGCTTACCATGAAGGTGAGGTGAAGGAGAAGAAGGGTTTGTTGGAGAAGATCAAGGAGAAGATTCCCGGGTACCATCCCAAGACTGAGGAAGAGAAGCTGGAGAAGGAGAAAGAGAAGCCAACTGGTTCTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001786 GO:0003674 GO:0003779 GO:0005488 GO:0005507 GO:0005515 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005911 GO:0006950 GO:0008092 GO:0008150 GO:0008289 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009506 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009737 GO:0010029 GO:0010033 GO:0010035 GO:0016020 GO:0016151 GO:0019898 GO:0030054 GO:0031210 GO:0031647 GO:0033993 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048580 GO:0050789 GO:0050793 GO:0050821 GO:0050896 GO:0050997 GO:0051239 GO:0055044 GO:0065007 GO:0065008 GO:0070405 GO:0072341 GO:0090559 GO:0097305 GO:1900140 GO:1901700 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dehydrin

Protein Analysis

278

Amino Acids

32.28

Weight (kDa)

5.41

Isoelectric Point (pI)

58.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dehydrin	PF00257	60 - 212	2.9e-18	Dehydrin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20440 AT1G20450 AT1G20450 AT1G76180 AT1G76180
fragaria_vesca	FvH4_2g37690
malus_domestica	MD08G1004500.v1.1 MD15G1003900.v1.1
prunus_persica	Prupe.1G356400_v2.0.a1
pyrus_communis	pycom15g00280
rosa_chinensis	RchiOBHm_Chr6g0304041
rosa_laevigata	RLG00000011023
rosa_multiflora	Rmu_sc0003805.1_g000015
rosa_roxburghii	Rroxscaffold_7G00164160
rosa_rugosa	Rorug06G0327200
rosa_samantha	Rh6AG441000 Rh6BG461800 Rh6CG453200 Rh6DG440500
rosa_wichuraiana	Rw6G038210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	467
Acc65I	GGTACC	1 cut(s)	768
AccB1I	GGYRCC	1 cut(s)	768
AccI	GTMKAC	1 cut(s)	192
AciI	CCGC	4 cut(s)	5, 54, 521, 674
AclWI	GGATC	1 cut(s)	297
AcuI	CTGAAG	1 cut(s)	407
AfaI	GTAC	3 cut(s)	14, 32, 770
AfiI	CCNNNNNNNGG	1 cut(s)	532
AjuI	GAANNNNNNNTTGG	2 cut(s)	722, 754
AluBI	AGCT	7 cut(s)	185, 295, 315, 321, 397, 625, 796
AluI	AGCT	7 cut(s)	185, 295, 315, 321, 397, 625, 796
Alw26I	GTCTC	4 cut(s)	29, 59, 336, 669
AlwI	GGATC	1 cut(s)	297
Ama87I	CYCGRG	1 cut(s)	764
AoxI	GGCC	3 cut(s)	22, 42, 517
ApeKI	GCWGC	3 cut(s)	198, 201, 312
Asp700I	GAANNNNTTC	2 cut(s)	599, 651
Asp718I	GGTACC	1 cut(s)	768
AspS9I	GGNCC	3 cut(s)	56, 469, 518
AsuC2I	CCSGG	4 cut(s)	473, 630, 765, 766
AsuHPI	GGTGA	3 cut(s)	20, 725, 730
AvaI	CYCGRG	1 cut(s)	764
AvaII	GGWCC	2 cut(s)	56, 469
AxyI	CCTNAGG	1 cut(s)	240
BanI	GGYRCC	1 cut(s)	768
BauI	CACGAG	3 cut(s)	26, 230, 488
BbvI	GCAGC	3 cut(s)	210, 213, 324
BccI	CCATC	2 cut(s)	133, 780
BceAI	ACGGC	2 cut(s)	463, 532
BcnI	CCSGG	4 cut(s)	473, 630, 765, 766
BcoDI	GTCTC	4 cut(s)	29, 59, 336, 669
BfmI	CTRYAG	1 cut(s)	196
BisI	GCNGC	3 cut(s)	199, 202, 313
BlsI	GCNGC	3 cut(s)	200, 203, 314
Bme1390I	CCNGG	4 cut(s)	473, 630, 765, 766
Bme18I	GGWCC	2 cut(s)	56, 469
BmeT110I	CYCGRG	1 cut(s)	764
BmgT120I	GGNCC	3 cut(s)	56, 469, 518
BmiI	GGNNCC	4 cut(s)	237, 471, 537, 770
BmrFI	CCNGG	4 cut(s)	473, 630, 765, 766
BpmI	CTGGAG	2 cut(s)	301, 818
Bpu10I	CCTNAGC	1 cut(s)	177
BpuEI	CTTGAG	2 cut(s)	383, 626
BpuMI	CCSGG	4 cut(s)	473, 630, 765, 766
BsaI	GGTCTC	2 cut(s)	29, 59
BsaJI	CCNNGG	3 cut(s)	39, 45, 764
BsaXI	ACNNNNNCTCC	2 cut(s)	299, 329
Bsc4I	CCNNNNNNNGG	1 cut(s)	532
Bse118I	RCCGGY	1 cut(s)	413
Bse1I	ACTGG	2 cut(s)	59, 826
Bse21I	CCTNAGG	1 cut(s)	240
BseDI	CCNNGG	3 cut(s)	39, 45, 764
BseGI	GGATG	3 cut(s)	87, 502, 772
BseLI	CCNNNNNNNGG	1 cut(s)	532
BseMII	CTCAG	4 cut(s)	162, 168, 456, 774
BseNI	ACTGG	2 cut(s)	59, 826
BseRI	GAGGAG	7 cut(s)	62, 125, 128, 275, 278, 548, 584
BseXI	GCAGC	3 cut(s)	210, 213, 324
BshFI	GGCC	3 cut(s)	24, 44, 519
BshNI	GGYRCC	1 cut(s)	768
BsiHKCI	CYCGRG	1 cut(s)	764
BsiSI	CCGG	6 cut(s)	414, 473, 630, 644, 677, 765
BslFI	GGGAC	2 cut(s)	396, 455
BslI	CCNNNNNNNGG	1 cut(s)	532
BsmAI	GTCTC	4 cut(s)	29, 59, 336, 669
BsmBI	CGTCTC	2 cut(s)	336, 669
BsmFI	GGGAC	2 cut(s)	396, 455
BsnI	GGCC	3 cut(s)	24, 44, 519
Bso31I	GGTCTC	2 cut(s)	29, 59
BsoBI	CYCGRG	1 cut(s)	764
Bsp143I	GATC	6 cut(s)	73, 302, 408, 511, 612, 747
BspACI	CCGC	4 cut(s)	5, 54, 521, 674
BspANI	GGCC	3 cut(s)	24, 44, 519
BspCNI	CTCAG	4 cut(s)	163, 169, 457, 775
BspHI	TCATGA	1 cut(s)	130
BspLI	GGNNCC	4 cut(s)	237, 471, 537, 770
BspMAI	CTGCAG	1 cut(s)	200
BspPI	GGATC	1 cut(s)	297
BspT107I	GGYRCC	1 cut(s)	768
BspTNI	GGTCTC	2 cut(s)	29, 59
BsrFI	RCCGGY	1 cut(s)	413
BsrI	ACTGG	2 cut(s)	59, 826
BssAI	RCCGGY	1 cut(s)	413
BssECI	CCNNGG	3 cut(s)	39, 45, 764
BssMI	GATC	6 cut(s)	73, 302, 408, 511, 612, 747
BssSI	CACGAG	3 cut(s)	26, 230, 488
BssT1I	CCWWGG	1 cut(s)	39
Bst2BI	CACGAG	3 cut(s)	26, 230, 488
Bst4CI	ACNGT	1 cut(s)	556
Bst6I	CTCTTC	4 cut(s)	345, 359, 426, 783
BstC8I	GCNNGC	4 cut(s)	183, 415, 521, 699
BstDEI	CTNAG	5 cut(s)	171, 177, 240, 465, 783
BstF5I	GGATG	3 cut(s)	87, 502, 772
BstKTI	GATC	6 cut(s)	76, 305, 411, 514, 615, 750
BstMAI	GTCTC	4 cut(s)	29, 59, 336, 669
BstMBI	GATC	6 cut(s)	73, 302, 408, 511, 612, 747
BstMWI	GCNNNNNNNGC	1 cut(s)	318
BstSCI	CCNGG	4 cut(s)	471, 628, 763, 764
BstSFI	CTRYAG	1 cut(s)	196
BstV1I	GCAGC	3 cut(s)	210, 213, 324
BstXI	CCANNNNNNTGG	1 cut(s)	77
Bsu36I	CCTNAGG	1 cut(s)	240
BsuRI	GGCC	3 cut(s)	24, 44, 519
BtsCI	GGATG	3 cut(s)	87, 502, 772
BtsIMutI	CAGTG	1 cut(s)	462
Cac8I	GCNNGC	4 cut(s)	183, 415, 521, 699
CciI	TCATGA	1 cut(s)	130
Cfr10I	RCCGGY	1 cut(s)	413
Cfr13I	GGNCC	3 cut(s)	56, 469, 518
Cfr9I	CCCGGG	1 cut(s)	764
CseI	GACGC	1 cut(s)	651
Csp6I	GTAC	3 cut(s)	13, 31, 769
CviAII	CATG	5 cut(s)	131, 218, 275, 530, 707
CviQI	GTAC	3 cut(s)	13, 31, 769
DdeI	CTNAG	5 cut(s)	171, 177, 240, 465, 783
DpnI	GATC	6 cut(s)	75, 304, 410, 513, 614, 749
DpnII	GATC	6 cut(s)	73, 302, 408, 511, 612, 747
DrdI	GACNNNNNNGTC	1 cut(s)	467
DseDI	GACNNNNNNGTC	1 cut(s)	467
Eam1104I	CTCTTC	4 cut(s)	345, 359, 426, 783
EarI	CTCTTC	4 cut(s)	345, 359, 426, 783
Eco130I	CCWWGG	1 cut(s)	39
Eco31I	GGTCTC	2 cut(s)	29, 59
Eco47I	GGWCC	2 cut(s)	56, 469
Eco57I	CTGAAG	1 cut(s)	407
Eco81I	CCTNAGG	1 cut(s)	240
Eco88I	CYCGRG	1 cut(s)	764
EcoO109I	RGGNCCY	1 cut(s)	469
EcoT14I	CCWWGG	1 cut(s)	39
ErhI	CCWWGG	1 cut(s)	39
Esp3I	CGTCTC	2 cut(s)	336, 669
FaeI	CATG	5 cut(s)	134, 221, 278, 533, 710
FaiI	YATR	8 cut(s)	132, 189, 219, 252, 276, 531, 684, 708
FaqI	GGGAC	2 cut(s)	396, 455
FatI	CATG	5 cut(s)	130, 217, 274, 529, 706
FauI	CCCGC	1 cut(s)	528
FblI	GTMKAC	1 cut(s)	192
Fnu4HI	GCNGC	3 cut(s)	199, 202, 313
FokI	GGATG	3 cut(s)	94, 489, 759
Fsp4HI	GCNGC	3 cut(s)	199, 202, 313
GluI	GCNGC	3 cut(s)	199, 202, 313
GsuI	CTGGAG	2 cut(s)	301, 818
HaeIII	GGCC	3 cut(s)	24, 44, 519
HapII	CCGG	6 cut(s)	414, 473, 630, 644, 677, 765
HgaI	GACGC	1 cut(s)	651
Hin1II	CATG	5 cut(s)	134, 221, 278, 533, 710
HindIII	AAGCTT	2 cut(s)	293, 623
HinfI	GANTC	1 cut(s)	760
HpaII	CCGG	6 cut(s)	414, 473, 630, 644, 677, 765
HphI	GGTGA	3 cut(s)	20, 725, 730
Hpy166II	GTNNAC	1 cut(s)	193
Hpy188I	TCNGA	3 cut(s)	172, 289, 307
Hpy188III	TCNNGA	3 cut(s)	131, 154, 230
Hpy8I	GTNNAC	1 cut(s)	193
HpyCH4III	ACNGT	1 cut(s)	556
HpyCH4V	TGCA	1 cut(s)	198
HpyF10VI	GCNNNNNNNGC	1 cut(s)	318
HpyF3I	CTNAG	5 cut(s)	171, 177, 240, 465, 783
Hsp92II	CATG	5 cut(s)	134, 221, 278, 533, 710
KpnI	GGTACC	1 cut(s)	772
KroI	GCCGGC	1 cut(s)	413
KroNI	GCCGGC	1 cut(s)	415
Kzo9I	GATC	6 cut(s)	73, 302, 408, 511, 612, 747
LmnI	GCTCC	3 cut(s)	320, 535, 571
Lsp1109I	GCAGC	3 cut(s)	210, 213, 324
MaeIII	GTNAC	1 cut(s)	329
MalI	GATC	6 cut(s)	75, 304, 410, 513, 614, 749
MboI	GATC	6 cut(s)	73, 302, 408, 511, 612, 747
MmeI	TCCRAC	2 cut(s)	330, 720
MreI	CGCCGGCG	1 cut(s)	413
MroNI	GCCGGC	1 cut(s)	413
MroXI	GAANNNNTTC	2 cut(s)	599, 651
MslI	CAYNNNNRTG	2 cut(s)	528, 711
MspI	CCGG	6 cut(s)	414, 473, 630, 644, 677, 765
MspR9I	CCNGG	4 cut(s)	473, 630, 765, 766
MwoI	GCNNNNNNNGC	1 cut(s)	318
NaeI	GCCGGC	1 cut(s)	415
NciI	CCSGG	4 cut(s)	473, 630, 765, 766
NdeII	GATC	6 cut(s)	73, 302, 408, 511, 612, 747
NgoMIV	GCCGGC	1 cut(s)	413
NlaIII	CATG	5 cut(s)	134, 221, 278, 533, 710
NlaIV	GGNNCC	4 cut(s)	237, 471, 537, 770
NmeAIII	GCCGAG	1 cut(s)	70
NmuCI	GTSAC	1 cut(s)	329
PagI	TCATGA	1 cut(s)	130
PdiI	GCCGGC	1 cut(s)	415
PdmI	GAANNNNTTC	2 cut(s)	599, 651
PfeI	GAWTC	1 cut(s)	760
PfoI	TCCNGGA	1 cut(s)	628
PkrI	GCNGC	3 cut(s)	200, 203, 314
PpuMI	RGGWCCY	1 cut(s)	469
Psp5II	RGGWCCY	1 cut(s)	469
PspN4I	GGNNCC	4 cut(s)	237, 471, 537, 770
PspPI	GGNCC	3 cut(s)	56, 469, 518
PspPPI	RGGWCCY	1 cut(s)	469
PstI	CTGCAG	1 cut(s)	200
RsaI	GTAC	3 cut(s)	14, 32, 770
RsaNI	GTAC	3 cut(s)	13, 31, 769
RseI	CAYNNNNRTG	2 cut(s)	528, 711
SatI	GCNGC	3 cut(s)	199, 202, 313
Sau3AI	GATC	6 cut(s)	73, 302, 408, 511, 612, 747
Sau96I	GGNCC	3 cut(s)	56, 469, 518
ScrFI	CCNGG	4 cut(s)	473, 630, 765, 766
SfcI	CTRYAG	1 cut(s)	196
SgrAI	CRCCGGYG	1 cut(s)	413
SinI	GGWCC	2 cut(s)	56, 469
SmaI	CCCGGG	1 cut(s)	766
SmiMI	CAYNNNNRTG	2 cut(s)	528, 711
SmlI	CTYRAG	2 cut(s)	398, 605
SmoI	CTYRAG	2 cut(s)	398, 605
SsiI	CCGC	4 cut(s)	5, 54, 521, 674
StyD4I	CCNGG	4 cut(s)	471, 628, 763, 764
StyI	CCWWGG	1 cut(s)	39
TaaI	ACNGT	1 cut(s)	556
TaqI	TCGA	1 cut(s)	153
TatI	WGTACW	1 cut(s)	12
TfiI	GAWTC	1 cut(s)	760
TscAI	CASTG	1 cut(s)	469
TseFI	GTSAC	1 cut(s)	329
TseI	GCWGC	3 cut(s)	198, 201, 312
Tsp45I	GTSAC	1 cut(s)	329
TspDTI	ATGAA	6 cut(s)	116, 147, 291, 363, 699, 723
TspMI	CCCGGG	1 cut(s)	764
TspRI	CASTG	1 cut(s)	469
VpaK11BI	GGWCC	2 cut(s)	56, 469
XmaI	CCCGGG	1 cut(s)	764
XmiI	GTMKAC	1 cut(s)	192
XmnI	GAANNNNTTC	2 cut(s)	599, 651

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.