Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0010925

Physical Location & Seq

Genomic Coordinates Reverse (-)

62972620 .. 62976852

Gene Structure 4233 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG453200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGCTGGTGAGTACAACAAAAGCCACGAGTACGAGACCAAGGCCGAGGAGGGCGGTCCAGTTGAGACCCAGGATCGTGGGTTGTTTGATTTCTTGGGGAAGAAGAAGGAGGAGGAGAAGCCTATTCATCAAGAACAGGAGGAGGTGATTGTCACCGAGTTCGAGAAAGTCAAGGTGTCTGAGGCTGAGCCAGCAGCTTATGTAGACTACAGCAAACCTGCCGAGCATGGTTATCATCATGAGGAACATAAGGAGGAGGAGGTGGAGAAGAAGCACGAAACTCTATCCGAGAAGCTTCGCCGATCCGACAGCAGCTCTAGCTCGTCTAGCGACGAGGAAGGAGACGATGAAGAGAAAAGGCAGAAGAGGAAGGAGAGGAAGGAGAAGAAGGGACTGACGGAAAAGATCAAGGAGAAGATCTCCGGCGACAAAGAAGAAGAGAAGAAACACGGCTACCAGCAGGACACTCAGATCCCGGTGGAGAAGTTCCACGAGGAACACGGCCATCCCTACGATCACGGCCCAGTCGTCCACCACCATGAGGAGCCAAAAGTTGAACCAACAGCTGTGTACGGAGAGGAGGAGAAGAAAGAGGACGAGAAGAAGGGTTTCCTTGAGAAGATCAAGGACAAGCTTCCCGGACACAAGAAGCCAGAGGATGGTCCAGTTGTGTCTCCACCACCGCCGGAGTATGAAAATGTTGAGCCTGCTCATCATGAAGGTGAGGTGAAGGAGAAAAAGGGTTTATTGGAGAAGATCAAGGAGAAGATTCCCGGGTACCATCCCAAGACTGAGGAAGAGAAGGAGAAGGAAAAGGAGAAAGAGAGGCCTACTGGTTCTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001786 GO:0003674 GO:0003779 GO:0005488 GO:0005507 GO:0005515 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005911 GO:0006950 GO:0008092 GO:0008150 GO:0008289 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009506 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009737 GO:0010029 GO:0010033 GO:0010035 GO:0016020 GO:0016151 GO:0019898 GO:0030054 GO:0031210 GO:0031647 GO:0033993 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048580 GO:0050789 GO:0050793 GO:0050821 GO:0050896 GO:0050997 GO:0051239 GO:0055044 GO:0065007 GO:0065008 GO:0070405 GO:0072341 GO:0090559 GO:0097305 GO:1900140 GO:1901700 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dehydrin

Protein Analysis

281

Amino Acids

32.67

Weight (kDa)

5.36

Isoelectric Point (pI)

54.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dehydrin	PF00257	18 - 215	8.4e-18	Dehydrin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20440 AT1G20450 AT1G20450 AT1G76180 AT1G76180
fragaria_vesca	FvH4_2g37690
malus_domestica	MD08G1004500.v1.1 MD15G1003900.v1.1
prunus_persica	Prupe.1G356400_v2.0.a1
pyrus_communis	pycom15g00280
rosa_chinensis	RchiOBHm_Chr6g0304041
rosa_laevigata	RLG00000011023
rosa_multiflora	Rmu_sc0003805.1_g000015
rosa_roxburghii	Rroxscaffold_7G00164160
rosa_rugosa	Rorug06G0327200
rosa_samantha	Rh6AG441000 Rh6BG461800 Rh6CG453200 Rh6DG440500
rosa_wichuraiana	Rw6G038210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	226
Acc65I	GGTACC	1 cut(s)	777
AccB1I	GGYRCC	1 cut(s)	777
AccB7I	CCANNNNNTGG	1 cut(s)	659
AccI	GTMKAC	1 cut(s)	204
AciI	CCGC	2 cut(s)	54, 683
AclWI	GGATC	3 cut(s)	81, 297, 466
AcoI	YGGCCR	1 cut(s)	502
AfaI	GTAC	4 cut(s)	14, 32, 572, 779
AfiI	CCNNNNNNNGG	2 cut(s)	541, 659
AgsI	TTSAA	1 cut(s)	557
AjnI	CCWGG	1 cut(s)	69
AluBI	AGCT	6 cut(s)	197, 295, 315, 321, 566, 634
AluI	AGCT	6 cut(s)	197, 295, 315, 321, 566, 634
Alw26I	GTCTC	4 cut(s)	29, 59, 336, 678
AlwI	GGATC	3 cut(s)	81, 297, 466
Ama87I	CYCGRG	1 cut(s)	773
AoxI	GGCC	4 cut(s)	42, 502, 520, 827
ApeKI	GCWGC	2 cut(s)	194, 312
Asp700I	GAANNNNTTC	1 cut(s)	608
Asp718I	GGTACC	1 cut(s)	777
AspS9I	GGNCC	3 cut(s)	56, 521, 662
AsuC2I	CCSGG	4 cut(s)	476, 639, 774, 775
AsuHPI	GGTGA	5 cut(s)	20, 145, 157, 734, 739
AvaI	CYCGRG	1 cut(s)	773
AvaII	GGWCC	2 cut(s)	56, 662
BanI	GGYRCC	1 cut(s)	777
BauI	CACGAG	2 cut(s)	26, 491
BbvI	GCAGC	2 cut(s)	206, 324
BccI	CCATC	3 cut(s)	513, 653, 789
BceAI	ACGGC	3 cut(s)	466, 517, 535
BciT130I	CCWGG	1 cut(s)	71
BcnI	CCSGG	4 cut(s)	476, 639, 774, 775
BcoDI	GTCTC	4 cut(s)	29, 59, 336, 678
BfaI	CTAG	2 cut(s)	318, 327
BfmI	CTRYAG	1 cut(s)	208
BfuAI	ACCTGC	1 cut(s)	226
BglII	AGATCT	1 cut(s)	417
BisI	GCNGC	2 cut(s)	195, 313
BlpI	GCTNAGC	1 cut(s)	186
BlsI	GCNGC	2 cut(s)	196, 314
Bme1390I	CCNGG	5 cut(s)	71, 476, 639, 774, 775
Bme18I	GGWCC	2 cut(s)	56, 662
BmeT110I	CYCGRG	1 cut(s)	773
BmgT120I	GGNCC	3 cut(s)	56, 521, 662
BmiI	GGNNCC	2 cut(s)	546, 779
BmrFI	CCNGG	5 cut(s)	71, 476, 639, 774, 775
BmrI	ACTGGG	1 cut(s)	518
BmuI	ACTGGG	1 cut(s)	518
BplI	GAGNNNNNCTC	2 cut(s)	404, 436
Bpu1102I	GCTNAGC	1 cut(s)	186
BpuEI	CTTGAG	1 cut(s)	635
BpuMI	CCSGG	4 cut(s)	476, 639, 774, 775
BsaI	GGTCTC	2 cut(s)	29, 59
BsaJI	CCNNGG	4 cut(s)	39, 45, 69, 773
Bsc4I	CCNNNNNNNGG	2 cut(s)	541, 659
Bse1I	ACTGG	4 cut(s)	59, 524, 665, 838
BseBI	CCWGG	1 cut(s)	71
BseDI	CCNNGG	4 cut(s)	39, 45, 69, 773
BseGI	GGATG	3 cut(s)	505, 664, 781
BseLI	CCNNNNNNNGG	2 cut(s)	541, 659
BseMII	CTCAG	4 cut(s)	171, 177, 482, 783
BseNI	ACTGG	4 cut(s)	59, 524, 665, 838
BseRI	GAGGAG	9 cut(s)	62, 125, 128, 155, 269, 272, 557, 593, 596
BseXI	GCAGC	2 cut(s)	206, 324
BshFI	GGCC	4 cut(s)	44, 504, 522, 829
BshNI	GGYRCC	1 cut(s)	777
BsiHKCI	CYCGRG	1 cut(s)	773
BsiSI	CCGG	5 cut(s)	423, 476, 639, 686, 774
BslFI	GGGAC	1 cut(s)	405
BslI	CCNNNNNNNGG	2 cut(s)	541, 659
BsmAI	GTCTC	4 cut(s)	29, 59, 336, 678
BsmBI	CGTCTC	1 cut(s)	336
BsmFI	GGGAC	1 cut(s)	405
BsnI	GGCC	4 cut(s)	44, 504, 522, 829
Bso31I	GGTCTC	2 cut(s)	29, 59
BsoBI	CYCGRG	1 cut(s)	773
Bsp143I	GATC	8 cut(s)	73, 302, 405, 417, 471, 514, 621, 756
Bsp1720I	GCTNAGC	1 cut(s)	186
BspACI	CCGC	2 cut(s)	54, 683
BspANI	GGCC	4 cut(s)	44, 504, 522, 829
BspCNI	CTCAG	4 cut(s)	172, 178, 481, 784
BspHI	TCATGA	2 cut(s)	238, 715
BspLI	GGNNCC	2 cut(s)	546, 779
BspMI	ACCTGC	1 cut(s)	226
BspPI	GGATC	3 cut(s)	81, 297, 466
BspT107I	GGYRCC	1 cut(s)	777
BspTNI	GGTCTC	2 cut(s)	29, 59
BsrI	ACTGG	4 cut(s)	59, 524, 665, 838
BssECI	CCNNGG	4 cut(s)	39, 45, 69, 773
BssMI	GATC	8 cut(s)	73, 302, 405, 417, 471, 514, 621, 756
BssSI	CACGAG	2 cut(s)	26, 491
BssT1I	CCWWGG	1 cut(s)	39
Bst2BI	CACGAG	2 cut(s)	26, 491
Bst2UI	CCWGG	1 cut(s)	71
Bst6I	CTCTTC	4 cut(s)	345, 359, 432, 792
BstC8I	GCNNGC	2 cut(s)	192, 708
BstDEI	CTNAG	4 cut(s)	180, 186, 468, 792
BstF5I	GGATG	3 cut(s)	505, 664, 781
BstKTI	GATC	8 cut(s)	76, 305, 408, 420, 474, 517, 624, 759
BstMAI	GTCTC	4 cut(s)	29, 59, 336, 678
BstMBI	GATC	8 cut(s)	73, 302, 405, 417, 471, 514, 621, 756
BstMWI	GCNNNNNNNGC	3 cut(s)	191, 318, 327
BstNI	CCWGG	1 cut(s)	71
BstSCI	CCNGG	5 cut(s)	69, 474, 637, 772, 773
BstSFI	CTRYAG	1 cut(s)	208
BstV1I	GCAGC	2 cut(s)	206, 324
BstX2I	RGATCY	2 cut(s)	417, 471
BstXI	CCANNNNNNTGG	1 cut(s)	77
BstYI	RGATCY	2 cut(s)	417, 471
BsuRI	GGCC	4 cut(s)	44, 504, 522, 829
BtsCI	GGATG	3 cut(s)	505, 664, 781
BveI	ACCTGC	1 cut(s)	226
Cac8I	GCNNGC	2 cut(s)	192, 708
CciI	TCATGA	2 cut(s)	238, 715
Cfr13I	GGNCC	3 cut(s)	56, 521, 662
Cfr9I	CCCGGG	1 cut(s)	773
Csp6I	GTAC	4 cut(s)	13, 31, 571, 778
CviAII	CATG	4 cut(s)	227, 239, 539, 716
CviQI	GTAC	4 cut(s)	13, 31, 571, 778
DdeI	CTNAG	4 cut(s)	180, 186, 468, 792
DpnI	GATC	8 cut(s)	75, 304, 407, 419, 473, 516, 623, 758
DpnII	GATC	8 cut(s)	73, 302, 405, 417, 471, 514, 621, 756
EaeI	YGGCCR	1 cut(s)	502
Eam1104I	CTCTTC	4 cut(s)	345, 359, 432, 792
EarI	CTCTTC	4 cut(s)	345, 359, 432, 792
Eco130I	CCWWGG	1 cut(s)	39
Eco147I	AGGCCT	1 cut(s)	829
Eco31I	GGTCTC	2 cut(s)	29, 59
Eco47I	GGWCC	2 cut(s)	56, 662
Eco88I	CYCGRG	1 cut(s)	773
EcoRII	CCWGG	1 cut(s)	69
EcoT14I	CCWWGG	1 cut(s)	39
ErhI	CCWWGG	1 cut(s)	39
Esp3I	CGTCTC	1 cut(s)	336
FaeI	CATG	4 cut(s)	230, 242, 542, 719
FaiI	YATR	7 cut(s)	201, 228, 240, 249, 540, 693, 717
FaqI	GGGAC	1 cut(s)	405
FatI	CATG	4 cut(s)	226, 238, 538, 715
FblI	GTMKAC	1 cut(s)	204
Fnu4HI	GCNGC	2 cut(s)	195, 313
FokI	GGATG	3 cut(s)	492, 671, 768
Fsp4HI	GCNGC	2 cut(s)	195, 313
FspBI	CTAG	2 cut(s)	318, 327
GluI	GCNGC	2 cut(s)	195, 313
HaeIII	GGCC	4 cut(s)	44, 504, 522, 829
HapII	CCGG	5 cut(s)	423, 476, 639, 686, 774
Hin1II	CATG	4 cut(s)	230, 242, 542, 719
HindIII	AAGCTT	2 cut(s)	293, 632
HinfI	GANTC	1 cut(s)	769
HpaII	CCGG	5 cut(s)	423, 476, 639, 686, 774
HphI	GGTGA	5 cut(s)	20, 145, 157, 734, 739
Hpy166II	GTNNAC	3 cut(s)	205, 532, 571
Hpy188I	TCNGA	4 cut(s)	181, 289, 307, 471
Hpy188III	TCNNGA	4 cut(s)	131, 163, 239, 716
Hpy8I	GTNNAC	3 cut(s)	205, 532, 571
Hpy99I	CGWCG	1 cut(s)	335
HpyF10VI	GCNNNNNNNGC	3 cut(s)	191, 318, 327
HpyF3I	CTNAG	4 cut(s)	180, 186, 468, 792
Hsp92II	CATG	4 cut(s)	230, 242, 542, 719
KpnI	GGTACC	1 cut(s)	781
Kzo9I	GATC	8 cut(s)	73, 302, 405, 417, 471, 514, 621, 756
LmnI	GCTCC	1 cut(s)	544
Lsp1109I	GCAGC	2 cut(s)	206, 324
MaeI	CTAG	2 cut(s)	318, 327
MaeIII	GTNAC	1 cut(s)	151
MalI	GATC	8 cut(s)	75, 304, 407, 419, 473, 516, 623, 758
MboI	GATC	8 cut(s)	73, 302, 405, 417, 471, 514, 621, 756
MflI	RGATCY	2 cut(s)	417, 471
MmeI	TCCRAC	1 cut(s)	330
MroXI	GAANNNNTTC	1 cut(s)	608
MslI	CAYNNNNRTG	2 cut(s)	537, 720
MspA1I	CMGCKG	1 cut(s)	566
MspI	CCGG	5 cut(s)	423, 476, 639, 686, 774
MspR9I	CCNGG	5 cut(s)	71, 476, 639, 774, 775
MvaI	CCWGG	1 cut(s)	71
MwoI	GCNNNNNNNGC	3 cut(s)	191, 318, 327
NciI	CCSGG	4 cut(s)	476, 639, 774, 775
NdeII	GATC	8 cut(s)	73, 302, 405, 417, 471, 514, 621, 756
NlaIII	CATG	4 cut(s)	230, 242, 542, 719
NlaIV	GGNNCC	2 cut(s)	546, 779
NmeAIII	GCCGAG	2 cut(s)	70, 247
NmuCI	GTSAC	1 cut(s)	151
PagI	TCATGA	2 cut(s)	238, 715
PceI	AGGCCT	1 cut(s)	829
PcsI	WCGNNNNNNNCGW	1 cut(s)	525
PdmI	GAANNNNTTC	1 cut(s)	608
PfeI	GAWTC	1 cut(s)	769
PflMI	CCANNNNNTGG	1 cut(s)	659
PfoI	TCCNGGA	1 cut(s)	637
PkrI	GCNGC	2 cut(s)	196, 314
Psp6I	CCWGG	1 cut(s)	69
PspGI	CCWGG	1 cut(s)	69
PspN4I	GGNNCC	2 cut(s)	546, 779
PspPI	GGNCC	3 cut(s)	56, 521, 662
PsuI	RGATCY	2 cut(s)	417, 471
PvuII	CAGCTG	1 cut(s)	566
RsaI	GTAC	4 cut(s)	14, 32, 572, 779
RsaNI	GTAC	4 cut(s)	13, 31, 571, 778
RseI	CAYNNNNRTG	2 cut(s)	537, 720
SatI	GCNGC	2 cut(s)	195, 313
Sau3AI	GATC	8 cut(s)	73, 302, 405, 417, 471, 514, 621, 756
Sau96I	GGNCC	3 cut(s)	56, 521, 662
ScrFI	CCNGG	5 cut(s)	71, 476, 639, 774, 775
SfcI	CTRYAG	1 cut(s)	208
SinI	GGWCC	2 cut(s)	56, 662
SmaI	CCCGGG	1 cut(s)	775
SmiMI	CAYNNNNRTG	2 cut(s)	537, 720
SmlI	CTYRAG	1 cut(s)	614
SmoI	CTYRAG	1 cut(s)	614
SseBI	AGGCCT	1 cut(s)	829
SsiI	CCGC	2 cut(s)	54, 683
SspMI	CTAG	2 cut(s)	318, 327
StuI	AGGCCT	1 cut(s)	829
StyD4I	CCNGG	5 cut(s)	69, 474, 637, 772, 773
StyI	CCWWGG	1 cut(s)	39
TaqI	TCGA	1 cut(s)	162
TatI	WGTACW	1 cut(s)	12
TfiI	GAWTC	1 cut(s)	769
TseFI	GTSAC	1 cut(s)	151
TseI	GCWGC	2 cut(s)	194, 312
Tsp45I	GTSAC	1 cut(s)	151
TspDTI	ATGAA	4 cut(s)	116, 363, 708, 732
TspGWI	ACGGA	2 cut(s)	413, 588
TspMI	CCCGGG	1 cut(s)	773
Van91I	CCANNNNNTGG	1 cut(s)	659
VpaK11BI	GGWCC	2 cut(s)	56, 662
XmaI	CCCGGG	1 cut(s)	773
XmiI	GTMKAC	1 cut(s)	204
XmnI	GAANNNNTTC	1 cut(s)	608
XspI	CTAG	2 cut(s)	318, 327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.