AT1G20650
ERF Family

belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
7157826 .. 7160590
2765 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G20650.1

Sequence Viewer

Length: 1146 bp
ATGACTTGTTGTTTCTCTTGTTTGAATCCTCGAACCAAGGACATAAGAGTCGACATTGATAACGCTCGATGCAACTCTCGTTACCAAACCGATTCATCAGTTCATGGAAGTGATACAACAGGAACAGAGTCGATTTCGGGTATCTTAGTAAATGGTAAAGTGAATAGTCCGATACCTGGTGGTGGAGCTCGGAGCTTCACGTTCAAGGAGTTAGCTGCAGCTACAAGAAACTTCCGGGAAGTTAATTTGCTCGGAGAAGGAGGTTTTGGCAGAGTTTATAAGGGACGTTTAGATTCAGGACAAGTAGTGGCTATTAAGCAATTGAATCCAGATGGGCTTCAAGGGAACCGAGAGTTTATAGTAGAAGTTCTTATGCTTAGCTTATTGCATCATCCCAATCTCGTTACATTGATCGGTTACTGTACTTCTGGTGATCAAAGACTTCTTGTCTATGAATACATGCCAATGGGAAGCTTAGAAGATCACCTTTTTGATCTTGAGTCTAATCAAGAACCATTAAGCTGGAATACTCGAATGAAAATCGCGGTTGGTGCAGCTCGAGGAATAGAGTATCTTCACTGCACAGCTAACCCGCCAGTGATTTACCGTGATTTGAAATCCGCAAACATATTGTTAGATAAAGAGTTCAGTCCAAAACTCTCGGATTTCGGATTGGCGAAACTCGGTCCAGTTGGTGATCGAACTCATGTATCGACTCGTGTCATGGGAACTTACGGTTACTGTGCTCCTGAATACGCAATGAGCGGGAAATTAACTGTTAAATCGGATATCTACTGCTTCGGTGTAGTGTTGCTTGAGCTGATTACTGGGAGAAAAGCTATTGATTTAGGTCAAAAGCAAGGCGAGCAGAATCTTGTTACTTGGTCACGTCCATACCTCAAGGATCAGAAGAAGTTTGGACATTTAGTGGATCCGTCTCTACGAGGAAAATACCCAAGACGGTGTTTAAACTATGCGATTGCGATTATTGCAATGTGTCTTAATGAAGAAGCTCATTATCGACCGTTCATAGGTGACATAGTTGTGGCACTAGAGTACTTAGCCGCACAGAGCAGATCTCATGAAGCTCGAAACGTCTCATCACCGTCACCAGAGATTTCAAGAACGCCGCGACGAGACTTGTAA

Protein Analysis

381

Amino Acids

42.26

Weight (kDa)

8.59

Isoelectric Point (pI)

39.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 79 - 344 1.2e-44 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 82 - 349 1.6e-45 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 279
AasI GACNNNNNNGTC 1 cut(s) 47
AccBSI CCGCTC 1 cut(s) 765
AccI GTMKAC 1 cut(s) 51
AccII CGCG 2 cut(s) 545, 1132
AciI CCGC 6 cut(s) 545, 593, 621, 765, 1065, 1130
AclWI GGATC 3 cut(s) 912, 926, 939
AfaI GTAC 2 cut(s) 424, 1058
AfiI CCNNNNNNNGG 3 cut(s) 176, 182, 1031
AgsI TTSAA 6 cut(s) 25, 205, 325, 341, 616, 1122
AhdI GACNNNNNGTC 1 cut(s) 446
AjiI CACGTC 1 cut(s) 890
AjnI CCWGG 1 cut(s) 175
AjuI GAANNNNNNNTTGG 2 cut(s) 249, 281
Alw21I GWGCWC 2 cut(s) 190, 748
Alw26I GTCTC 3 cut(s) 942, 1102, 1131
AlwI GGATC 3 cut(s) 912, 926, 939
Ama87I CYCGRG 1 cut(s) 558
ApeKI GCWGC 3 cut(s) 215, 218, 554
AspS9I GGNCC 1 cut(s) 686
AsuC2I CCSGG 1 cut(s) 236
AsuHPI GGTGA 6 cut(s) 443, 476, 707, 1046, 1095, 1101
AvaI CYCGRG 1 cut(s) 558
AvaII GGWCC 1 cut(s) 686
BaeI ACNNNNGTAYC 2 cut(s) 693, 726
BamHI GGATCC 1 cut(s) 931
BanII GRGCYC 1 cut(s) 190
BauI CACGAG 1 cut(s) 717
Bbv12I GWGCWC 2 cut(s) 190, 748
BbvI GCAGC 3 cut(s) 202, 230, 566
BccI CCATC 1 cut(s) 326
BciT130I CCWGG 1 cut(s) 177
BclI TGATCA 1 cut(s) 433
BcnI CCSGG 1 cut(s) 236
BcoDI GTCTC 3 cut(s) 942, 1102, 1131
BfaI CTAG 1 cut(s) 1052
BfmI CTRYAG 1 cut(s) 216
BglII AGATCT 1 cut(s) 1076
BisI GCNGC 5 cut(s) 216, 219, 555, 1065, 1130
BlpI GCTNAGC 1 cut(s) 377
BlsI GCNGC 5 cut(s) 217, 220, 556, 1066, 1131
BmcAI AGTACT 1 cut(s) 1058
Bme1390I CCNGG 2 cut(s) 177, 236
Bme18I GGWCC 1 cut(s) 686
BmeRI GACNNNNNGTC 1 cut(s) 446
BmeT110I CYCGRG 1 cut(s) 558
BmgBI CACGTC 1 cut(s) 890
BmgT120I GGNCC 1 cut(s) 686
BmiI GGNNCC 2 cut(s) 347, 933
BmrFI CCNGG 2 cut(s) 177, 236
BmrI ACTGGG 1 cut(s) 837
BmsI GCATC 2 cut(s) 59, 397
BmuI ACTGGG 1 cut(s) 837
BoxI GACNNNNGTC 1 cut(s) 719
BplI GAGNNNNNCTC 2 cut(s) 1063, 1095
Bpu1102I GCTNAGC 1 cut(s) 377
BpuEI CTTGAG 3 cut(s) 518, 836, 884
BpuMI CCSGG 1 cut(s) 236
BsaJI CCNNGG 1 cut(s) 36
Bsc4I CCNNNNNNNGG 3 cut(s) 176, 182, 1031
Bse1I ACTGG 3 cut(s) 596, 689, 832
Bse3DI GCAATG 2 cut(s) 765, 999
BseBI CCWGG 1 cut(s) 177
BseDI CCNNGG 1 cut(s) 36
BseGI GGATG 1 cut(s) 391
BseLI CCNNNNNNNGG 3 cut(s) 176, 182, 1031
BseMI GCAATG 2 cut(s) 765, 999
BseNI ACTGG 3 cut(s) 596, 689, 832
BseXI GCAGC 3 cut(s) 202, 230, 566
BsgI GTGCAG 2 cut(s) 565, 573
Bsh1236I CGCG 2 cut(s) 545, 1132
Bsh1285I CGRYCG 1 cut(s) 1025
BsiEI CGRYCG 1 cut(s) 1025
BsiHKAI GWGCWC 2 cut(s) 190, 748
BsiHKCI CYCGRG 1 cut(s) 558
BsiSI CCGG 1 cut(s) 235
BslFI GGGAC 1 cut(s) 297
BslI CCNNNNNNNGG 3 cut(s) 176, 182, 1031
BsmAI GTCTC 3 cut(s) 942, 1102, 1131
BsmBI CGTCTC 2 cut(s) 942, 1102
BsmFI GGGAC 1 cut(s) 297
BsoBI CYCGRG 1 cut(s) 558
Bsp1286I GDGCHC 2 cut(s) 190, 748
Bsp143I GATC 8 cut(s) 411, 433, 481, 493, 697, 904, 931, 1076
Bsp1720I GCTNAGC 1 cut(s) 377
BspACI CCGC 6 cut(s) 545, 593, 621, 765, 1065, 1130
BspFNI CGCG 2 cut(s) 545, 1132
BspHI TCATGA 1 cut(s) 1081
BspLI GGNNCC 2 cut(s) 347, 933
BspMAI CTGCAG 1 cut(s) 220
BspPI GGATC 3 cut(s) 912, 926, 939
BsrBI CCGCTC 1 cut(s) 765
BsrDI GCAATG 2 cut(s) 765, 999
BsrI ACTGG 3 cut(s) 596, 689, 832
BssECI CCNNGG 1 cut(s) 36
BssMI GATC 8 cut(s) 411, 433, 481, 493, 697, 904, 931, 1076
BssSI CACGAG 1 cut(s) 717
BssT1I CCWWGG 1 cut(s) 36
Bst2BI CACGAG 1 cut(s) 717
Bst2UI CCWGG 1 cut(s) 177
Bst4CI ACNGT 8 cut(s) 422, 608, 737, 743, 778, 963, 1026, 1107
BstC8I GCNNGC 1 cut(s) 866
BstDEI CTNAG 4 cut(s) 145, 377, 475, 1060
BstF5I GGATG 1 cut(s) 391
BstFNI CGCG 2 cut(s) 545, 1132
BstKTI GATC 8 cut(s) 414, 436, 484, 496, 700, 907, 934, 1079
BstMAI GTCTC 3 cut(s) 942, 1102, 1131
BstMBI GATC 8 cut(s) 411, 433, 481, 493, 697, 904, 931, 1076
BstMCI CGRYCG 1 cut(s) 1025
BstMWI GCNNNNNNNGC 3 cut(s) 551, 865, 989
BstNI CCWGG 1 cut(s) 177
BstNSI RCATGY 1 cut(s) 463
BstPAI GACNNNNGTC 1 cut(s) 719
BstSCI CCNGG 2 cut(s) 175, 234
BstSFI CTRYAG 1 cut(s) 216
BstUI CGCG 2 cut(s) 545, 1132
BstV1I GCAGC 3 cut(s) 202, 230, 566
BstX2I RGATCY 2 cut(s) 931, 1076
BstXI CCANNNNNNTGG 1 cut(s) 522
BstYI RGATCY 2 cut(s) 931, 1076
BtrI CACGTC 1 cut(s) 890
BtsCI GGATG 1 cut(s) 391
BtsI GCAGTG 1 cut(s) 577
BtsIMutI CAGTG 2 cut(s) 577, 603
Cac8I GCNNGC 1 cut(s) 866
CciI TCATGA 1 cut(s) 1081
Cfr13I GGNCC 1 cut(s) 686
CsiI ACCWGGT 1 cut(s) 175
Csp6I GTAC 2 cut(s) 423, 1057
CviAII CATG 5 cut(s) 104, 460, 707, 724, 1082
CviQI GTAC 2 cut(s) 423, 1057
DdeI CTNAG 4 cut(s) 145, 377, 475, 1060
DpnI GATC 8 cut(s) 413, 435, 483, 495, 699, 906, 933, 1078
DpnII GATC 8 cut(s) 411, 433, 481, 493, 697, 904, 931, 1076
DraI TTTAAA 1 cut(s) 969
DrdI GACNNNNNNGTC 1 cut(s) 47
DriI GACNNNNNGTC 1 cut(s) 446
DseDI GACNNNNNNGTC 1 cut(s) 47
Eam1105I GACNNNNNGTC 1 cut(s) 446
Ecl136II GAGCTC 1 cut(s) 188
Eco130I CCWWGG 1 cut(s) 36
Eco24I GRGCYC 1 cut(s) 190
Eco32I GATATC 1 cut(s) 790
Eco47I GGWCC 1 cut(s) 686
Eco53kI GAGCTC 1 cut(s) 188
Eco88I CYCGRG 1 cut(s) 558
EcoICRI GAGCTC 1 cut(s) 188
EcoRII CCWGG 1 cut(s) 175
EcoRV GATATC 1 cut(s) 790
EcoT14I CCWWGG 1 cut(s) 36
EcoT38I GRGCYC 1 cut(s) 190
ErhI CCWWGG 1 cut(s) 36
Esp3I CGTCTC 2 cut(s) 942, 1102
FaeI CATG 5 cut(s) 107, 463, 710, 727, 1085
FalI AAGNNNNNCTT 2 cut(s) 471, 503
FaqI GGGAC 1 cut(s) 297
FatI CATG 5 cut(s) 103, 459, 706, 723, 1081
FauI CCCGC 2 cut(s) 600, 758
FbaI TGATCA 1 cut(s) 433
FblI GTMKAC 1 cut(s) 51
Fnu4HI GCNGC 5 cut(s) 216, 219, 555, 1065, 1130
FokI GGATG 1 cut(s) 378
FriOI GRGCYC 1 cut(s) 190
Fsp4HI GCNGC 5 cut(s) 216, 219, 555, 1065, 1130
FspBI CTAG 1 cut(s) 1052
GluI GCNGC 5 cut(s) 216, 219, 555, 1065, 1130
HapII CCGG 1 cut(s) 235
Hin1II CATG 5 cut(s) 107, 463, 710, 727, 1085
HincII GTYRAC 1 cut(s) 52
HindII GTYRAC 1 cut(s) 52
HindIII AAGCTT 1 cut(s) 472
HinfI GANTC 9 cut(s) 25, 48, 92, 128, 293, 325, 500, 715, 871
HpaII CCGG 1 cut(s) 235
HphI GGTGA 6 cut(s) 443, 476, 707, 1046, 1095, 1101
Hpy166II GTNNAC 1 cut(s) 52
Hpy188I TCNGA 7 cut(s) 171, 192, 254, 664, 671, 787, 909
Hpy188III TCNNGA 7 cut(s) 297, 329, 497, 509, 749, 1082, 1122
Hpy8I GTNNAC 1 cut(s) 52
Hpy99I CGWCG 1 cut(s) 1137
HpyAV CCTTC 1 cut(s) 251
HpyCH4III ACNGT 8 cut(s) 422, 608, 737, 743, 778, 963, 1026, 1107
HpyCH4IV ACGT 4 cut(s) 200, 286, 889, 1095
HpyCH4V TGCA 6 cut(s) 72, 218, 388, 554, 582, 992
HpyF10VI GCNNNNNNNGC 3 cut(s) 551, 865, 989
HpyF3I CTNAG 4 cut(s) 145, 377, 475, 1060
HpySE526I ACGT 4 cut(s) 200, 286, 889, 1095
Hsp92II CATG 5 cut(s) 107, 463, 710, 727, 1085
Ksp22I TGATCA 1 cut(s) 433
Kzo9I GATC 8 cut(s) 411, 433, 481, 493, 697, 904, 931, 1076
LmnI GCTCC 3 cut(s) 185, 192, 751
Lsp1109I GCAGC 3 cut(s) 202, 230, 566
LweI GCATC 2 cut(s) 59, 397
MabI ACCWGGT 1 cut(s) 175
MaeI CTAG 1 cut(s) 1052
MaeII ACGT 4 cut(s) 200, 286, 889, 1095
MaeIII GTNAC 8 cut(s) 80, 403, 416, 737, 877, 885, 1034, 1107
MalI GATC 8 cut(s) 413, 435, 483, 495, 699, 906, 933, 1078
MbiI CCGCTC 1 cut(s) 765
MboI GATC 8 cut(s) 411, 433, 481, 493, 697, 904, 931, 1076
MboII GAAGA 4 cut(s) 491, 566, 922, 1019
MfeI CAATTG 1 cut(s) 320
MflI RGATCY 2 cut(s) 931, 1076
MhlI GDGCHC 2 cut(s) 190, 748
MluCI AATT 3 cut(s) 244, 320, 770
MlyI GAGTC 4 cut(s) 57, 137, 509, 709
MnlI CCTC 5 cut(s) 39, 254, 554, 908, 938
MseI TTAA 7 cut(s) 243, 315, 518, 773, 780, 968, 1002
MslI CAYNNNNRTG 3 cut(s) 108, 464, 1043
MspI CCGG 1 cut(s) 235
MspR9I CCNGG 2 cut(s) 177, 236
MssI GTTTAAAC 1 cut(s) 969
MunI CAATTG 1 cut(s) 320
MvaI CCWGG 1 cut(s) 177
MvnI CGCG 2 cut(s) 545, 1132
MwoI GCNNNNNNNGC 3 cut(s) 551, 865, 989
NciI CCSGG 1 cut(s) 236
NdeII GATC 8 cut(s) 411, 433, 481, 493, 697, 904, 931, 1076
NlaIII CATG 5 cut(s) 107, 463, 710, 727, 1085
NlaIV GGNNCC 2 cut(s) 347, 933
NmuCI GTSAC 3 cut(s) 885, 1034, 1107
NspI RCATGY 1 cut(s) 463
PaeR7I CTCGAG 1 cut(s) 558
PagI TCATGA 1 cut(s) 1081
PfeI GAWTC 5 cut(s) 25, 92, 293, 325, 871
PfoI TCCNGGA 1 cut(s) 234
PkrI GCNGC 5 cut(s) 217, 220, 556, 1066, 1131
PleI GAGTC 4 cut(s) 56, 136, 508, 709
PmeI GTTTAAAC 1 cut(s) 969
PpsI GAGTC 4 cut(s) 56, 136, 508, 709
PshAI GACNNNNGTC 1 cut(s) 719
PsiI TTATAA 1 cut(s) 279
Psp124BI GAGCTC 1 cut(s) 190
Psp6I CCWGG 1 cut(s) 175
PspGI CCWGG 1 cut(s) 175
PspN4I GGNNCC 2 cut(s) 347, 933
PspPI GGNCC 1 cut(s) 686
PspXI VCTCGAGB 1 cut(s) 558
PstI CTGCAG 1 cut(s) 220
PsuI RGATCY 2 cut(s) 931, 1076
RsaI GTAC 2 cut(s) 424, 1058
RsaNI GTAC 2 cut(s) 423, 1057
RseI CAYNNNNRTG 3 cut(s) 108, 464, 1043
SacI GAGCTC 1 cut(s) 190
SalI GTCGAC 1 cut(s) 50
SaqAI TTAA 7 cut(s) 243, 315, 518, 773, 780, 968, 1002
SatI GCNGC 5 cut(s) 216, 219, 555, 1065, 1130
Sau3AI GATC 8 cut(s) 411, 433, 481, 493, 697, 904, 931, 1076
Sau96I GGNCC 1 cut(s) 686
ScaI AGTACT 1 cut(s) 1058
SchI GAGTC 4 cut(s) 57, 137, 509, 709
ScrFI CCNGG 2 cut(s) 177, 236
SduI GDGCHC 2 cut(s) 190, 748
SexAI ACCWGGT 1 cut(s) 175
SfaNI GCATC 2 cut(s) 59, 397
SfcI CTRYAG 1 cut(s) 216
Sfr274I CTCGAG 1 cut(s) 558
SinI GGWCC 1 cut(s) 686
SlaI CTCGAG 1 cut(s) 558
SmiMI CAYNNNNRTG 3 cut(s) 108, 464, 1043
SmlI CTYRAG 4 cut(s) 497, 558, 815, 899
SmoI CTYRAG 4 cut(s) 497, 558, 815, 899
Sse9I AATT 3 cut(s) 244, 320, 770
SsiI CCGC 6 cut(s) 545, 593, 621, 765, 1065, 1130
SspMI CTAG 1 cut(s) 1052
SstI GAGCTC 1 cut(s) 190
StyD4I CCNGG 2 cut(s) 175, 234
StyI CCWWGG 1 cut(s) 36
TaaI ACNGT 8 cut(s) 422, 608, 737, 743, 778, 963, 1026, 1107
TaiI ACGT 4 cut(s) 203, 289, 892, 1098
TaqII GACCGA 1 cut(s) 674
TasI AATT 3 cut(s) 244, 320, 770
TatI WGTACW 2 cut(s) 422, 1056
TauI GCSGC 2 cut(s) 1067, 1132
TfiI GAWTC 5 cut(s) 25, 92, 293, 325, 871
Tru1I TTAA 7 cut(s) 243, 315, 518, 773, 780, 968, 1002
Tru9I TTAA 7 cut(s) 243, 315, 518, 773, 780, 968, 1002
TscAI CASTG 2 cut(s) 584, 603
TseFI GTSAC 3 cut(s) 885, 1034, 1107
TseI GCWGC 3 cut(s) 215, 218, 554
Tsp45I GTSAC 3 cut(s) 885, 1034, 1107
TspDTI ATGAA 7 cut(s) 84, 92, 468, 551, 1018, 1020, 1098
TspGWI ACGGA 1 cut(s) 924
TspRI CASTG 2 cut(s) 584, 603
VpaK11BI GGWCC 1 cut(s) 686
XceI RCATGY 1 cut(s) 463
XhoI CTCGAG 1 cut(s) 558
XmiI GTMKAC 1 cut(s) 51
XspI CTAG 1 cut(s) 1052
ZrmI AGTACT 1 cut(s) 1058
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.