Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0009748

Physical Location & Seq

Genomic Coordinates Forward (+)

37522336 .. 37525537

Gene Structure 3202 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002649

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1278 bp

ATGGGAATGCCCTACGTCACACCTGGTGACGCGCATCGGAATCCAAAGGGCGGTCGTAAAAAAGCGAGTCAGTTCAGATCCTCTGTCAGTGTCACCCACCGTGAAAACAACGAAATCCCAAGGGCAATTCGTCCTCGGCGGAAAGATGTTAGCAAGGTCGAAATTGATAATGGTACTACTCGATCCTCAGGTAGTGGAAGAGGAAGGGGAAACTTTGATGATGCTGAGAGTGGGAAGGGAAAAGGAAAGGGTGGCAACAGCGCACAAAAGAGTGTGGCAAGAAGCTTCACATTTCGCGAACTTGCAGCCGCCACTAAGGGATTTAAGGAAGTGAATTTGATTGGGGAAGGGGGCTTCGGAAGAGTTTACAAAGGTCGGCTTGAAGCAGGCCAGGTTGTTGCGATCAAACAACTTAATCATGACGGTCTTCAAGGATTTCAGGAGTTCATCGTGGAGGTTCTCATGTTAAGCCTACTACACCATACTAATCTCGTCACCTTGATCGGCTACTGTACTGATGGAGATCAAAGACTCTTAGTCTATGAGTACATGCCGAGGGGTAGCTTGGAAGATCATCTTTTTGATCTGAAACCTGATCAAGAGCCACTTTGCTGGGATACTCGAATTAAGATAGCTGTTGGTGCAGCACGGGGCCTCGAATATCTTCACTGCAAAGCTAACCCACCTGTCATCTACCGTGACTTGAAATCAGCAAATATATTGCTGGACGATCATTTCAATCCAAAGCTTTCGGACTTTGGACTTGCTAAACTTGGTCCTGTGGGAGATAACACCCATGTTTCAACCAGAGTTATGGGAACCTATGGATATTGTGCACCAGAATATGCTATGAGTGGCAAGTTGACTCTTAAATCTGATATTTATAGCTTTGGTGTGGTTATGTTGGAGTTGATTACTGGCAAGAAGGCAATTGACAACACTATGAAGCAAGGGGAACAGAACCTAGTAGCTTGGTCTCGTCCATTCTTGAAAGACCGAAGGAAGTTTGTCCAGTTGGTTGATCCTTTATTGCAGGGACGCTTTCCCATTCGTTGTTTGCATCATGCAGTTGCTATTACTGCCATGTGTCTTCAAGAGCAACCAACTTTCCGTCCTCTTATCAGTGATATTGTTGTAGCACTCGAGTACTTGGCTTCACAGAACCACAAACCGGGCAGAGCTGGGGTTCATAGTCCCATTTCTTCATCACCGTCACAGCAGCACAGGGATACTTTTTCTCGGGAATCAGATTACAGAATGAGTTCAACTTCTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002221 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0002757 GO:0002758 GO:0002764 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009941 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0031967 GO:0031975 GO:0036211 GO:0038023 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

426

Amino Acids

47.05

Weight (kDa)

9.43

Isoelectric Point (pI)

33.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	109 - 372	2.5e-44	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	112 - 380	9e-45	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009748)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20650 AT1G76370
fragaria_vesca	FvH4_5g25320 FvH4_5g25320 FvH4_5g25320 FvH4_5g25320 FvH4_5g25320
malus_domestica	MD06G1009700.v1.1 MD16G1284800.v1.1
prunus_persica	Prupe.5G010800_v2.0.a1
pyrus_communis	pycom06g00800
rosa_chinensis	RchiOBHm_Chr7g0215541
rosa_laevigata	RLG00000002649
rosa_multiflora	Rmu_sc0000898.1_g000097 Rmu_sc0002094.1_g000022
rosa_roxburghii	Rroxscaffold_3G00244120
rosa_rugosa	Rorug04G0205900
rosa_samantha	Rh4CG281000 Rh4DG265000 Rh7BG283000
rosa_wichuraiana	Rw7G024820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	32, 297
AciI	CCGC	3 cut(s)	51, 139, 309
AclWI	GGATC	3 cut(s)	72, 177, 1016
AcsI	RAATTY	1 cut(s)	334
AdeI	CACNNNGTG	1 cut(s)	26
AfaI	GTAC	4 cut(s)	175, 514, 548, 1148
AfiI	CCNNNNNNNGG	2 cut(s)	50, 1171
AgsI	TTSAA	8 cut(s)	383, 431, 706, 739, 804, 991, 1094, 1266
AhdI	GACNNNNNGTC	1 cut(s)	536
AjnI	CCWGG	2 cut(s)	22, 390
AluBI	AGCT	8 cut(s)	285, 564, 635, 677, 748, 888, 971, 1181
AluI	AGCT	8 cut(s)	285, 564, 635, 677, 748, 888, 971, 1181
Alw21I	GWGCWC	1 cut(s)	838
Alw26I	GTCTC	1 cut(s)	981
Alw44I	GTGCAC	1 cut(s)	834
AlwI	GGATC	3 cut(s)	72, 177, 1016
Ama87I	CYCGRG	2 cut(s)	1142, 1239
AoxI	GGCC	2 cut(s)	388, 652
ApaLI	GTGCAC	1 cut(s)	834
ApeKI	GCWGC	3 cut(s)	305, 644, 1219
ApoI	RAATTY	1 cut(s)	334
Asp700I	GAANNNNTTC	2 cut(s)	663, 1261
AspLEI	GCGC	2 cut(s)	34, 263
AspS9I	GGNCC	2 cut(s)	652, 776
AsuC2I	CCSGG	1 cut(s)	1173
AsuHPI	GGTGA	4 cut(s)	38, 85, 487, 1200
AvaI	CYCGRG	2 cut(s)	1142, 1239
AvaII	GGWCC	1 cut(s)	776
AxyI	CCTNAGG	1 cut(s)	187
BaeGI	GKGCMC	1 cut(s)	838
BbsI	GAAGAC	2 cut(s)	419, 1082
Bbv12I	GWGCWC	1 cut(s)	838
BbvI	GCAGC	3 cut(s)	317, 656, 1231
BccI	CCATC	1 cut(s)	512
BciT130I	CCWGG	2 cut(s)	24, 392
BciVI	GTATCC	2 cut(s)	610, 1222
BclI	TGATCA	1 cut(s)	595
BcnI	CCSGG	1 cut(s)	1173
BcoDI	GTCTC	1 cut(s)	981
BfaI	CTAG	1 cut(s)	965
BfuI	GTATCC	2 cut(s)	610, 1222
BisI	GCNGC	4 cut(s)	306, 309, 645, 1220
BlsI	GCNGC	4 cut(s)	307, 310, 646, 1221
BmcAI	AGTACT	1 cut(s)	1148
Bme1390I	CCNGG	3 cut(s)	24, 392, 1173
Bme18I	GGWCC	1 cut(s)	776
BmeRI	GACNNNNNGTC	1 cut(s)	536
BmeT110I	CYCGRG	2 cut(s)	1142, 1239
BmgT120I	GGNCC	2 cut(s)	652, 776
BmiI	GGNNCC	2 cut(s)	653, 820
BmrFI	CCNGG	3 cut(s)	24, 392, 1173
BmsI	GCATC	3 cut(s)	43, 211, 1069
BpiI	GAAGAC	2 cut(s)	419, 1082
BpuMI	CCSGG	1 cut(s)	1173
BsaBI	GATNNNNATC	1 cut(s)	522
BsaI	GGTCTC	1 cut(s)	981
BsaJI	CCNNGG	3 cut(s)	119, 134, 554
Bsc4I	CCNNNNNNNGG	2 cut(s)	50, 1171
Bse1I	ACTGG	2 cut(s)	922, 1012
Bse21I	CCTNAGG	1 cut(s)	187
Bse8I	GATNNNNATC	1 cut(s)	522
BseBI	CCWGG	2 cut(s)	24, 392
BseDI	CCNNGG	3 cut(s)	119, 134, 554
BseJI	GATNNNNATC	1 cut(s)	522
BseLI	CCNNNNNNNGG	2 cut(s)	50, 1171
BseMII	CTCAG	2 cut(s)	201, 216
BseNI	ACTGG	2 cut(s)	922, 1012
BseSI	GKGCMC	1 cut(s)	838
BseXI	GCAGC	3 cut(s)	317, 656, 1231
BseYI	CCCAGC	2 cut(s)	612, 1181
BsgI	GTGCAG	1 cut(s)	663
Bsh1236I	CGCG	2 cut(s)	32, 297
Bsh1285I	CGRYCG	1 cut(s)	55
BshFI	GGCC	2 cut(s)	390, 654
BsiEI	CGRYCG	1 cut(s)	55
BsiHKAI	GWGCWC	1 cut(s)	838
BsiHKCI	CYCGRG	2 cut(s)	1142, 1239
BsiSI	CCGG	1 cut(s)	1172
BslFI	GGGAC	2 cut(s)	1050, 1179
BslI	CCNNNNNNNGG	2 cut(s)	50, 1171
BsmAI	GTCTC	1 cut(s)	981
BsmFI	GGGAC	2 cut(s)	1050, 1179
BsmI	GAATGC	1 cut(s)	12
BsnI	GGCC	2 cut(s)	390, 654
Bso31I	GGTCTC	1 cut(s)	981
BsoBI	CYCGRG	2 cut(s)	1142, 1239
Bsp1286I	GDGCHC	1 cut(s)	838
Bsp68I	TCGCGA	1 cut(s)	297
BspACI	CCGC	3 cut(s)	51, 139, 309
BspANI	GGCC	2 cut(s)	390, 654
BspCNI	CTCAG	2 cut(s)	200, 217
BspFNI	CGCG	2 cut(s)	32, 297
BspHI	TCATGA	1 cut(s)	418
BspLI	GGNNCC	2 cut(s)	653, 820
BspPI	GGATC	3 cut(s)	72, 177, 1016
BspTNI	GGTCTC	1 cut(s)	981
BsrI	ACTGG	2 cut(s)	922, 1012
BssECI	CCNNGG	3 cut(s)	119, 134, 554
BssT1I	CCWWGG	1 cut(s)	119
Bst2UI	CCWGG	2 cut(s)	24, 392
Bst4CI	ACNGT	5 cut(s)	101, 425, 512, 698, 1212
Bst6I	CTCTTC	2 cut(s)	193, 355
BstC8I	GCNNGC	1 cut(s)	388
BstDEI	CTNAG	4 cut(s)	187, 225, 315, 535
BstFNI	CGCG	2 cut(s)	32, 297
BstHHI	GCGC	2 cut(s)	34, 263
BstMAI	GTCTC	1 cut(s)	981
BstMCI	CGRYCG	1 cut(s)	55
BstMWI	GCNNNNNNNGC	2 cut(s)	641, 1079
BstNI	CCWGG	2 cut(s)	24, 392
BstNSI	RCATGY	1 cut(s)	553
BstSCI	CCNGG	3 cut(s)	22, 390, 1171
BstSLI	GKGCMC	1 cut(s)	838
BstUI	CGCG	2 cut(s)	32, 297
BstV1I	GCAGC	3 cut(s)	317, 656, 1231
BstV2I	GAAGAC	2 cut(s)	419, 1082
BstX2I	RGATCY	1 cut(s)	77
BstXI	CCANNNNNNTGG	2 cut(s)	612, 814
BstYI	RGATCY	1 cut(s)	77
Bsu36I	CCTNAGG	1 cut(s)	187
BsuI	GTATCC	2 cut(s)	610, 1222
BsuRI	GGCC	2 cut(s)	390, 654
BtsI	GCAGTG	1 cut(s)	667
BtsIMutI	CAGTG	3 cut(s)	94, 667, 1129
BtuMI	TCGCGA	1 cut(s)	297
Cac8I	GCNNGC	1 cut(s)	388
CciI	TCATGA	1 cut(s)	418
CfoI	GCGC	2 cut(s)	34, 263
Cfr13I	GGNCC	2 cut(s)	652, 776
CseI	GACGC	2 cut(s)	38, 1047
CsiI	ACCWGGT	1 cut(s)	22
Csp6I	GTAC	4 cut(s)	174, 513, 547, 1147
CviAII	CATG	6 cut(s)	419, 463, 550, 797, 1064, 1084
CviQI	GTAC	4 cut(s)	174, 513, 547, 1147
DdeI	CTNAG	4 cut(s)	187, 225, 315, 535
DraIII	CACNNNGTG	1 cut(s)	26
DriI	GACNNNNNGTC	1 cut(s)	536
Eam1104I	CTCTTC	2 cut(s)	193, 355
Eam1105I	GACNNNNNGTC	1 cut(s)	536
EarI	CTCTTC	2 cut(s)	193, 355
EciI	GGCGGA	1 cut(s)	154
Eco130I	CCWWGG	1 cut(s)	119
Eco31I	GGTCTC	1 cut(s)	981
Eco47I	GGWCC	1 cut(s)	776
Eco81I	CCTNAGG	1 cut(s)	187
Eco88I	CYCGRG	2 cut(s)	1142, 1239
EcoO109I	RGGNCCY	1 cut(s)	652
EcoRII	CCWGG	2 cut(s)	22, 390
EcoT14I	CCWWGG	1 cut(s)	119
ErhI	CCWWGG	1 cut(s)	119
FaeI	CATG	6 cut(s)	422, 466, 553, 800, 1067, 1087
FalI	AAGNNNNNCTT	6 cut(s)	363, 395, 561, 593, 591, 623
FaqI	GGGAC	2 cut(s)	1050, 1179
FatI	CATG	6 cut(s)	418, 462, 549, 796, 1063, 1083
FbaI	TGATCA	1 cut(s)	595
Fnu4HI	GCNGC	4 cut(s)	306, 309, 645, 1220
Fsp4HI	GCNGC	4 cut(s)	306, 309, 645, 1220
FspBI	CTAG	1 cut(s)	965
GlaI	GCGC	2 cut(s)	33, 262
GluI	GCNGC	4 cut(s)	306, 309, 645, 1220
GsaI	CCCAGC	2 cut(s)	616, 1185
HaeIII	GGCC	2 cut(s)	390, 654
HapII	CCGG	1 cut(s)	1172
HgaI	GACGC	2 cut(s)	38, 1047
HhaI	GCGC	2 cut(s)	34, 263
Hin1II	CATG	6 cut(s)	422, 466, 553, 800, 1067, 1087
Hin6I	GCGC	2 cut(s)	32, 261
HinP1I	GCGC	2 cut(s)	32, 261
HincII	GTYRAC	1 cut(s)	864
HindII	GTYRAC	1 cut(s)	864
HindIII	AAGCTT	2 cut(s)	283, 746
HinfI	GANTC	5 cut(s)	40, 67, 531, 865, 1244
HpaII	CCGG	1 cut(s)	1172
HphI	GGTGA	4 cut(s)	38, 85, 487, 1200
Hpy166II	GTNNAC	3 cut(s)	367, 836, 864
Hpy188I	TCNGA	7 cut(s)	39, 77, 359, 588, 754, 877, 1249
Hpy188III	TCNNGA	7 cut(s)	296, 419, 440, 599, 988, 1094, 1241
Hpy8I	GTNNAC	3 cut(s)	367, 836, 864
HpyAV	CCTTC	5 cut(s)	198, 229, 341, 919, 993
HpyCH4III	ACNGT	5 cut(s)	101, 425, 512, 698, 1212
HpyCH4IV	ACGT	1 cut(s)	15
HpyCH4V	TGCA	7 cut(s)	305, 644, 672, 836, 1033, 1060, 1067
HpyF10VI	GCNNNNNNNGC	2 cut(s)	641, 1079
HpyF3I	CTNAG	4 cut(s)	187, 225, 315, 535
HpySE526I	ACGT	1 cut(s)	15
Hsp92II	CATG	6 cut(s)	422, 466, 553, 800, 1067, 1087
HspAI	GCGC	2 cut(s)	32, 261
Ksp22I	TGATCA	1 cut(s)	595
Lsp1109I	GCAGC	3 cut(s)	317, 656, 1231
LweI	GCATC	3 cut(s)	43, 211, 1069
MabI	ACCWGGT	1 cut(s)	22
MaeI	CTAG	1 cut(s)	965
MaeII	ACGT	1 cut(s)	15
MaeIII	GTNAC	6 cut(s)	16, 26, 91, 493, 698, 1212
MboII	GAAGA	7 cut(s)	210, 372, 419, 581, 656, 1082, 1194
MfeI	CAATTG	1 cut(s)	930
MflI	RGATCY	1 cut(s)	77
MhlI	GDGCHC	1 cut(s)	838
MluCI	AATT	5 cut(s)	126, 162, 334, 624, 930
MlyI	GAGTC	3 cut(s)	76, 525, 859
MmeI	TCCRAC	1 cut(s)	885
MnlI	CCTC	8 cut(s)	91, 144, 194, 196, 448, 549, 665, 1125
MroXI	GAANNNNTTC	2 cut(s)	663, 1261
MseI	TTAA	5 cut(s)	324, 414, 467, 627, 870
MspI	CCGG	1 cut(s)	1172
MspR9I	CCNGG	3 cut(s)	24, 392, 1173
MunI	CAATTG	1 cut(s)	930
Mva1269I	GAATGC	1 cut(s)	12
MvaI	CCWGG	2 cut(s)	24, 392
MvnI	CGCG	2 cut(s)	32, 297
MwoI	GCNNNNNNNGC	2 cut(s)	641, 1079
NciI	CCSGG	1 cut(s)	1173
NlaIII	CATG	6 cut(s)	422, 466, 553, 800, 1067, 1087
NlaIV	GGNNCC	2 cut(s)	653, 820
NmeAIII	GCCGAG	2 cut(s)	115, 579
NmuCI	GTSAC	6 cut(s)	16, 26, 91, 493, 698, 1212
NruI	TCGCGA	1 cut(s)	297
NspI	RCATGY	1 cut(s)	553
PaeR7I	CTCGAG	1 cut(s)	1142
PagI	TCATGA	1 cut(s)	418
PctI	GAATGC	1 cut(s)	12
PdmI	GAANNNNTTC	2 cut(s)	663, 1261
PfeI	GAWTC	2 cut(s)	40, 1244
PkrI	GCNGC	4 cut(s)	307, 310, 646, 1221
PleI	GAGTC	3 cut(s)	75, 525, 859
PpsI	GAGTC	3 cut(s)	75, 525, 859
Psp6I	CCWGG	2 cut(s)	22, 390
PspFI	CCCAGC	2 cut(s)	612, 1181
PspGI	CCWGG	2 cut(s)	22, 390
PspN4I	GGNNCC	2 cut(s)	653, 820
PspPI	GGNCC	2 cut(s)	652, 776
PspXI	VCTCGAGB	1 cut(s)	1142
PsuI	RGATCY	1 cut(s)	77
RruI	TCGCGA	1 cut(s)	297
RsaI	GTAC	4 cut(s)	175, 514, 548, 1148
RsaNI	GTAC	4 cut(s)	174, 513, 547, 1147
SaqAI	TTAA	5 cut(s)	324, 414, 467, 627, 870
SatI	GCNGC	4 cut(s)	306, 309, 645, 1220
Sau96I	GGNCC	2 cut(s)	652, 776
ScaI	AGTACT	1 cut(s)	1148
SchI	GAGTC	3 cut(s)	76, 525, 859
ScrFI	CCNGG	3 cut(s)	24, 392, 1173
SduI	GDGCHC	1 cut(s)	838
SexAI	ACCWGGT	1 cut(s)	22
SfaNI	GCATC	3 cut(s)	43, 211, 1069
Sfr274I	CTCGAG	1 cut(s)	1142
SinI	GGWCC	1 cut(s)	776
SlaI	CTCGAG	1 cut(s)	1142
SmlI	CTYRAG	1 cut(s)	1142
SmoI	CTYRAG	1 cut(s)	1142
Sse9I	AATT	5 cut(s)	126, 162, 334, 624, 930
SsiI	CCGC	3 cut(s)	51, 139, 309
SspMI	CTAG	1 cut(s)	965
StyD4I	CCNGG	3 cut(s)	22, 390, 1171
StyI	CCWWGG	1 cut(s)	119
TaaI	ACNGT	5 cut(s)	101, 425, 512, 698, 1212
TaiI	ACGT	1 cut(s)	18
TaqI	TCGA	5 cut(s)	159, 181, 622, 657, 1143
TaqII	GACCGA	1 cut(s)	1011
TasI	AATT	5 cut(s)	126, 162, 334, 624, 930
TatI	WGTACW	3 cut(s)	512, 546, 1146
TauI	GCSGC	1 cut(s)	311
TfiI	GAWTC	2 cut(s)	40, 1244
Tru1I	TTAA	5 cut(s)	324, 414, 467, 627, 870
Tru9I	TTAA	5 cut(s)	324, 414, 467, 627, 870
TscAI	CASTG	3 cut(s)	94, 674, 1129
TseFI	GTSAC	6 cut(s)	16, 26, 91, 493, 698, 1212
TseI	GCWGC	3 cut(s)	305, 644, 1219
Tsp45I	GTSAC	6 cut(s)	16, 26, 91, 493, 698, 1212
TspDTI	ATGAA	4 cut(s)	436, 959, 1178, 1194
TspGWI	ACGGA	1 cut(s)	1100
TspRI	CASTG	3 cut(s)	94, 674, 1129
VneI	GTGCAC	1 cut(s)	834
VpaK11BI	GGWCC	1 cut(s)	776
XapI	RAATTY	1 cut(s)	334
XceI	RCATGY	1 cut(s)	553
XhoI	CTCGAG	1 cut(s)	1142
XmnI	GAANNNNTTC	2 cut(s)	663, 1261
XspI	CTAG	1 cut(s)	965
ZrmI	AGTACT	1 cut(s)	1148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.