Rorug04G0205900
ERF Family

belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0009748
Physical Location & Seq
Reverse (-)
35845172 .. 35850412
5241 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0205900.1

Sequence Viewer

Length: 2361 bp
ATGAAGGCACTGGGTTACTTCAGTTCCATGGTTCAAATGAAACCCATTTGCGCCTTCAATTGTTTGTTTGGGGCACCATTCAAGATGAAGCAATATTCCACTGTTTTTTCTATGTGCAAGCAGATGATGAGTAATGCTTTCGAAGACACGGTAGAAAAACGTTGTGAATCTGGCGGTGTTGGATTAGATGAAGCCTTAGATTACTTCAATTCCATGGTTAAAATGAAACCCATTCCCTCCGCTAAGGCTTTTAATGGTTTGTTAGGGGCAGTGTACAAGTTGAAGCAGTATTCCACTGTGGTTTCTATGTATAAACAGTTGATGGGTATTGCTCACTTCCAACCTGATGATAGTACGATGAATGTTGTCATTAATTGCTTGTGTCGTCTGAATCGAGCGGATTTGGCTCTCTCTGCTTTAGTAATTGCTCTTAAACATGGTTTTCAGCCTGAGGCTTATTCTCTAAATCTTTTGGTTCGTGGGCTTTGCAAGAACAGCTCTCTGGCTGCAGCAGTGGACCTGTTCTGGAAAATGGAACACCACGAATGGGATAAATTCACTTATGGTATTATAATTAATGAGTTATGCAAAGCTGGGAAGGGTACTGATGGGATGGAGATACTTGAGCACATGTATGGAAATGGAAGGTTTAAGCCCGGCCTAGATTGTTACAATCCAATCATTGACAGCCTTTGTAAAGAAAGACGGCTAGATGAGGCTTTGACCCTGTTACATGATATGATCAACAGAAGTGTTGTACCAAATGCCATCACTTACAAATCATTGTTTCATGGGTTATGCAATGTGGGTTATTGGGATAAAGTACTCGCTCTGTTCGAAACAATGAAGGATCAAGGAACCGCCCCTAATGTTGCCACCTTCAACACCCTAATACATGCACTTTGCCAGTCAGGTAAGAGGGAAAAGGCCCAAAGATTCTTGTCTTTCATGGCTGAGAGTGGAATTCCACCAAATGTATATACATATAATATCCTAATCAACAGTCACTGCAGGGAAAAAAGAATACAAGAAGCAGTTTCTGTGTTAGAAAAGATGACTAGCAAAGGCATAAAGCCTACTGTTGTCACTTTTACCTCCTTAATTTCTGCTTCATGCAAGTCTGGTCAATGGGAAAAAGCTGTACAGTTATTTAAAAGTATGATTGAATTTGGAACCTTGCCTGATGTTTTTACATTCAATGCTGTGTTGGATGCTTTATGCAAGAGAGGGAAGACATCAGAGGCACTTAATCTTTTCGAAGAAATGATCCGTAGAGGTGTAAAGCCTAATCTTTTCACCTACAACTCCTTAATTCATGGATTATGCCTTTCTAGCAAGTGGAGAGAGGCAACAAGCTTGCTTGATAGAATGATGGATGAAGGAGTCTCACCAGATGTTGTAACCTTAACCTCTGTAATAGATGCTCTTTGCAAGGAGAGAAGGACCAAGGACGCCCTCACTGTTTTACAGCTAATGACTCAAAGAGGTCTAAGTCCTAACGTTATCACTTACAGCTGTCTAATTTATGGATTGTGCCTTACTTGCCAATGGAGAGAGGCAACACGCTTGCTTAATAGAATGATGGATGAAGGAATCCCGCCGGATGTTGTAACCTTCAACTCTTTAATAGATGCTCTTTGCAAGGATAGACGGACCAAGGATGCACTCACTGTTTTACAGCTAATGACTCAAAGAGGTCCAAGTCCTGACGTGATCACTTACAACTGTCTAGTTCGTGGATTGTGCCGTTCTGGCCAATGGAGAGAAGCAACAGGCTTGCTTAATAGAATGATGGATGAAGGAGTCCCACCAAATGTTGTAACCTTCAACTCTTTAATAGATGCTCTTTGCAAGGAGAGAAGGACCAAGGACGCCCTCACTGTTTTACAGCTAATGGCTGAAAGAGGTCTAAGTCCTGACGTTATCACTTACAACTGTCTTATTTATGGCATGTGCAAGACATCACAATGGGGTGAAGCCACAAGGTTGTATGATGAAATGGTTGGTCTGGGCATCTTACCTAATATGATAACTTTGACAGCACTTTTTGATACTCTCTGCAAAGAAGGGATGACAGAAGATGCTCGCAAAGCAGTTGAGGCAACATTTCAATATGGTGCAAACCAACCCGAGGGAAAGGGAGACGTAAATACTAAAATTATTCGTTCTCCTCCTCTATTTCTCATTCGTTATAACTTTCAAGCTTATGATGAAGGCTTGTTAAACAGTCTGCAATGTGTGCATGCTTGTGATGGTATGGAAAGGATCAAGCTGGAGTTTTCTCGTGGCAAAATGAACAAAGATGAAGAAGACCATGCATGTGCCATCAGAGAATGTGCTACTATGAGGTGGTTTACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Pkinase

Protein Analysis

786

Amino Acids

88.37

Weight (kDa)

8.26

Isoelectric Point (pI)

32.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 115 - 164 1.7e-06 PPR repeat family
PPR_2 PF13041 152 - 197 3.6e-06 PPR repeat family
PPR_1 PF12854 218 - 247 1.2e-06 PPR repeat
PPR_2 PF13041 223 - 268 5.4e-14 PPR repeat family
TPR_24 PF23276 224 - 310 5.3e-08 Fungal tetratrico peptide repeats
PPR_3 PF13812 243 - 300 1.6e-09 Pentatricopeptide repeat domain
PPR_2 PF13041 264 - 303 1.8e-10 PPR repeat family
PPR_long PF17177 273 - 387 3e-12 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 278 - 334 1.6e-12 Pentatricopeptide repeat domain
PPR_1 PF12854 288 - 317 2.8e-08 PPR repeat
PPR_2 PF13041 289 - 338 1.8e-17 PPR repeat family
TPR_24 PF23276 313 - 421 2.1e-10 Fungal tetratrico peptide repeats
PPR_1 PF12854 321 - 353 5.6e-12 PPR repeat
PPR PF01535 327 - 357 1.1e-07 PPR repeat
PPR_2 PF13041 328 - 373 6.7e-15 PPR repeat family
PPR_3 PF13812 347 - 408 1.2e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 355 - 387 1.1e-10 PPR repeat
PPR_2 PF13041 359 - 408 2.2e-15 PPR repeat family
PPR PF01535 362 - 391 2.5e-08 PPR repeat
MRP-S27 PF10037 365 - 425 5.5e-06 Mitochondrial 28S ribosomal protein S27
PPR_1 PF12854 393 - 422 6.8e-10 PPR repeat
PPR_2 PF13041 394 - 442 3.5e-20 PPR repeat family
PPR_3 PF13812 394 - 439 1.6e-08 Pentatricopeptide repeat domain
PPR PF01535 397 - 427 8.4e-09 PPR repeat
PPR_long PF17177 403 - 512 3.6e-08 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 418 - 468 2.6e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 425 - 457 1.3e-10 PPR repeat
PPR PF01535 432 - 462 8e-07 PPR repeat
PPR_2 PF13041 434 - 478 6.7e-12 PPR repeat family
PPR_3 PF13812 452 - 508 1.4e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 461 - 492 1.2e-07 PPR repeat
PPR_2 PF13041 464 - 512 1.4e-14 PPR repeat family
TPR_24 PF23276 485 - 595 2.1e-09 Fungal tetratrico peptide repeats
PPR_1 PF12854 495 - 527 1e-07 PPR repeat
PPR_2 PF13041 516 - 548 9.8e-09 PPR repeat family
PPR_3 PF13812 522 - 578 3.6e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 531 - 562 3.9e-10 PPR repeat
PPR_2 PF13041 534 - 583 3.7e-16 PPR repeat family
PPR PF01535 537 - 566 9.5e-06 PPR repeat
PPR_1 PF12854 565 - 597 6.8e-11 PPR repeat
PPR_2 PF13041 569 - 618 3.3e-18 PPR repeat family
PPR PF01535 572 - 602 1.6e-07 PPR repeat
PPR_3 PF13812 593 - 648 1.5e-11 Pentatricopeptide repeat domain
PPR_1 PF12854 601 - 632 5.2e-10 PPR repeat
PPR_2 PF13041 604 - 653 6.8e-17 PPR repeat family
PPR PF01535 607 - 637 2.7e-06 PPR repeat
PPR_1 PF12854 635 - 668 4.6e-10 PPR repeat
PPR_2 PF13041 639 - 688 6.7e-15 PPR repeat family
PPR PF01535 642 - 672 6.6e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 572, 2193
AccB1I GGYRCC 1 cut(s) 73
AccBSI CCGCTC 1 cut(s) 398
AciI CCGC 5 cut(s) 174, 240, 398, 861, 1598
AclI AACGTT 2 cut(s) 160, 1500
AclWI GGATC 3 cut(s) 858, 1261, 2273
AcoI YGGCCR 1 cut(s) 1753
AcsI RAATTY 3 cut(s) 554, 963, 1166
AcuI CTGAAG 1 cut(s) 4
AcyI GRCGYC 2 cut(s) 1452, 1872
AfaI GTAC 6 cut(s) 275, 355, 604, 759, 825, 1143
AfiI CCNNNNNNNGG 2 cut(s) 547, 2131
AflIII ACRYGT 1 cut(s) 630
AjiI CACGTC 1 cut(s) 1711
Alw21I GWGCWC 1 cut(s) 630
Alw26I GTCTC 2 cut(s) 1390, 2136
AlwI GGATC 3 cut(s) 858, 1261, 2273
AlwNI CAGNNNCTG 2 cut(s) 1008, 1040
Ama87I CYCGRG 1 cut(s) 2129
AoxI GGCC 3 cut(s) 658, 927, 1753
ApeKI GCWGC 2 cut(s) 506, 509
ApoI RAATTY 3 cut(s) 554, 963, 1166
AseI ATTAAT 2 cut(s) 372, 576
AspLEI GCGC 1 cut(s) 53
AspS9I GGNCC 6 cut(s) 517, 928, 1443, 1653, 1697, 1863
AsuC2I CCSGG 1 cut(s) 657
AsuHPI GGTGA 3 cut(s) 1288, 1380, 1985
AsuII TTCGAA 3 cut(s) 141, 837, 1257
AvaI CYCGRG 1 cut(s) 2129
AvaII GGWCC 5 cut(s) 517, 1443, 1653, 1697, 1863
AxyI CCTNAGG 1 cut(s) 450
BaeGI GKGCMC 1 cut(s) 76
BalI TGGCCA 1 cut(s) 1755
BanI GGYRCC 1 cut(s) 73
BauI CACGAG 1 cut(s) 2283
BbsI GAAGAC 3 cut(s) 150, 1238, 2316
Bbv12I GWGCWC 1 cut(s) 630
BbvI GCAGC 2 cut(s) 493, 521
BccI CCATC 9 cut(s) 316, 602, 607, 776, 1366, 1576, 1786, 2246, 2333
BceAI ACGGC 2 cut(s) 722, 1731
BclI TGATCA 2 cut(s) 741, 1713
BcnI CCSGG 1 cut(s) 657
BcoDI GTCTC 2 cut(s) 1390, 2136
BfaI CTAG 5 cut(s) 662, 710, 1059, 1332, 1730
BfmI CTRYAG 2 cut(s) 507, 1009
BglI GCCNNNNNGGC 1 cut(s) 1752
BisI GCNGC 2 cut(s) 507, 510
BlsI GCNGC 2 cut(s) 508, 511
BmcAI AGTACT 1 cut(s) 825
Bme1390I CCNGG 1 cut(s) 657
Bme18I GGWCC 5 cut(s) 517, 1443, 1653, 1697, 1863
BmeT110I CYCGRG 1 cut(s) 2129
BmgBI CACGTC 1 cut(s) 1711
BmgT120I GGNCC 6 cut(s) 517, 928, 1443, 1653, 1697, 1863
BmiI GGNNCC 3 cut(s) 75, 859, 1174
BmrFI CCNGG 1 cut(s) 657
BmrI ACTGGG 1 cut(s) 20
BmsI GCATC 7 cut(s) 1201, 1411, 1621, 1651, 1831, 2022, 2071
BmuI ACTGGG 1 cut(s) 20
BpiI GAAGAC 3 cut(s) 150, 1238, 2316
BpmI CTGGAG 1 cut(s) 2294
Bpu10I CCTNAGC 1 cut(s) 243
Bpu14I TTCGAA 3 cut(s) 141, 837, 1257
BpuEI CTTGAG 1 cut(s) 644
BpuMI CCSGG 1 cut(s) 657
BsaHI GRCGYC 2 cut(s) 1452, 1872
BsaJI CCNNGG 6 cut(s) 27, 213, 1446, 1656, 1866, 2130
Bsc4I CCNNNNNNNGG 2 cut(s) 547, 2131
Bse1I ACTGG 2 cut(s) 15, 907
Bse21I CCTNAGG 1 cut(s) 450
Bse3DI GCAATG 2 cut(s) 808, 2240
BseDI CCNNGG 6 cut(s) 27, 213, 1446, 1656, 1866, 2130
BseGI GGATG 8 cut(s) 618, 1216, 1381, 1591, 1609, 1666, 1801, 2076
BseLI CCNNNNNNNGG 2 cut(s) 547, 2131
BseMI GCAATG 2 cut(s) 808, 2240
BseMII CTCAG 2 cut(s) 441, 945
BseNI ACTGG 2 cut(s) 15, 907
BseRI GAGGAG 2 cut(s) 2160, 2163
BseSI GKGCMC 1 cut(s) 76
BseXI GCAGC 2 cut(s) 493, 521
BseYI CCCAGC 1 cut(s) 593
BshFI GGCC 3 cut(s) 660, 929, 1755
BshNI GGYRCC 1 cut(s) 73
BsiHKAI GWGCWC 1 cut(s) 630
BsiHKCI CYCGRG 1 cut(s) 2129
BsiSI CCGG 2 cut(s) 657, 1601
BslFI GGGAC 1 cut(s) 1790
BslI CCNNNNNNNGG 2 cut(s) 547, 2131
BsmAI GTCTC 2 cut(s) 1390, 2136
BsmBI CGTCTC 1 cut(s) 2136
BsmFI GGGAC 1 cut(s) 1790
BsnI GGCC 3 cut(s) 660, 929, 1755
BsoBI CYCGRG 1 cut(s) 2129
Bsp119I TTCGAA 3 cut(s) 141, 837, 1257
Bsp1286I GDGCHC 2 cut(s) 76, 630
Bsp1407I TGTACA 2 cut(s) 273, 1141
Bsp143I GATC 5 cut(s) 741, 850, 1266, 1713, 2265
Bsp19I CCATGG 2 cut(s) 27, 213
BspACI CCGC 5 cut(s) 174, 240, 398, 861, 1598
BspANI GGCC 3 cut(s) 660, 929, 1755
BspCNI CTCAG 2 cut(s) 442, 946
BspLI GGNNCC 3 cut(s) 75, 859, 1174
BspMAI CTGCAG 2 cut(s) 511, 1013
BspPI GGATC 3 cut(s) 858, 1261, 2273
BspT104I TTCGAA 3 cut(s) 141, 837, 1257
BspT107I GGYRCC 1 cut(s) 73
BsrBI CCGCTC 1 cut(s) 398
BsrDI GCAATG 2 cut(s) 808, 2240
BsrGI TGTACA 2 cut(s) 273, 1141
BsrI ACTGG 2 cut(s) 15, 907
BssECI CCNNGG 6 cut(s) 27, 213, 1446, 1656, 1866, 2130
BssMI GATC 5 cut(s) 741, 850, 1266, 1713, 2265
BssNI GRCGYC 2 cut(s) 1452, 1872
BssSI CACGAG 1 cut(s) 2283
BssT1I CCWWGG 5 cut(s) 27, 213, 1446, 1656, 1866
Bst2BI CACGAG 1 cut(s) 2283
BstACI GRCGYC 2 cut(s) 1452, 1872
BstAPI GCANNNNNTGC 1 cut(s) 2239
BstAUI TGTACA 2 cut(s) 273, 1141
BstBI TTCGAA 3 cut(s) 141, 837, 1257
BstC8I GCNNGC 6 cut(s) 119, 1358, 1568, 1778, 2086, 2244
BstDEI CTNAG 6 cut(s) 196, 243, 450, 954, 1490, 1910
BstDSI CCRYGG 2 cut(s) 27, 213
BstF5I GGATG 8 cut(s) 618, 1216, 1381, 1591, 1609, 1666, 1801, 2076
BstHHI GCGC 1 cut(s) 53
BstKTI GATC 5 cut(s) 744, 853, 1269, 1716, 2268
BstMAI GTCTC 2 cut(s) 1390, 2136
BstMBI GATC 5 cut(s) 741, 850, 1266, 1713, 2265
BstMWI GCNNNNNNNGC 9 cut(s) 404, 413, 495, 1332, 1542, 1752, 2090, 2099, 2239
BstNSI RCATGY 5 cut(s) 634, 899, 1954, 2246, 2322
BstSCI CCNGG 1 cut(s) 655
BstSFI CTRYAG 2 cut(s) 507, 1009
BstSLI GKGCMC 1 cut(s) 76
BstV1I GCAGC 2 cut(s) 493, 521
BstV2I GAAGAC 3 cut(s) 150, 1238, 2316
Bsu36I CCTNAGG 1 cut(s) 450
BsuRI GGCC 3 cut(s) 660, 929, 1755
BtgI CCRYGG 2 cut(s) 27, 213
BtrI CACGTC 1 cut(s) 1711
BtsCI GGATG 8 cut(s) 618, 1216, 1381, 1591, 1609, 1666, 1801, 2076
BtsI GCAGTG 3 cut(s) 276, 519, 1006
BtsIMutI CAGTG 9 cut(s) 8, 99, 276, 294, 519, 1006, 1458, 1668, 1878
Cac8I GCNNGC 6 cut(s) 119, 1358, 1568, 1778, 2086, 2244
CaiI CAGNNNCTG 2 cut(s) 1008, 1040
CfoI GCGC 1 cut(s) 53
Cfr13I GGNCC 6 cut(s) 517, 928, 1443, 1653, 1697, 1863
CseI GACGC 2 cut(s) 1460, 1880
Csp6I GTAC 6 cut(s) 274, 354, 603, 758, 824, 1142
CviQI GTAC 6 cut(s) 274, 354, 603, 758, 824, 1142
DdeI CTNAG 6 cut(s) 196, 243, 450, 954, 1490, 1910
DpnI GATC 5 cut(s) 743, 852, 1268, 1715, 2267
DpnII GATC 5 cut(s) 741, 850, 1266, 1713, 2265
DraI TTTAAA 1 cut(s) 1153
EaeI YGGCCR 1 cut(s) 1753
Eco130I CCWWGG 5 cut(s) 27, 213, 1446, 1656, 1866
Eco47I GGWCC 5 cut(s) 517, 1443, 1653, 1697, 1863
Eco57I CTGAAG 1 cut(s) 4
Eco81I CCTNAGG 1 cut(s) 450
Eco88I CYCGRG 1 cut(s) 2129
EcoRI GAATTC 1 cut(s) 963
EcoT14I CCWWGG 5 cut(s) 27, 213, 1446, 1656, 1866
EcoT22I ATGCAT 1 cut(s) 2320
ErhI CCWWGG 5 cut(s) 27, 213, 1446, 1656, 1866
Esp3I CGTCTC 1 cut(s) 2136
FaqI GGGAC 1 cut(s) 1790
FauI CCCGC 1 cut(s) 1605
FbaI TGATCA 2 cut(s) 741, 1713
Fnu4HI GCNGC 2 cut(s) 507, 510
FokI GGATG 8 cut(s) 625, 1223, 1388, 1598, 1616, 1673, 1808, 2083
Fsp4HI GCNGC 2 cut(s) 507, 510
FspBI CTAG 5 cut(s) 662, 710, 1059, 1332, 1730
GlaI GCGC 1 cut(s) 52
GluI GCNGC 2 cut(s) 507, 510
GsaI CCCAGC 1 cut(s) 597
GsuI CTGGAG 1 cut(s) 2294
HaeIII GGCC 3 cut(s) 660, 929, 1755
HapII CCGG 2 cut(s) 657, 1601
HgaI GACGC 2 cut(s) 1460, 1880
HhaI GCGC 1 cut(s) 53
Hin1I GRCGYC 2 cut(s) 1452, 1872
Hin6I GCGC 1 cut(s) 51
HinP1I GCGC 1 cut(s) 51
HindIII AAGCTT 2 cut(s) 1354, 2202
HinfI GANTC 8 cut(s) 167, 391, 936, 1383, 1477, 1593, 1687, 1803
HpaII CCGG 2 cut(s) 657, 1601
HphI GGTGA 3 cut(s) 1288, 1380, 1985
Hpy166II GTNNAC 3 cut(s) 274, 517, 2355
Hpy188I TCNGA 3 cut(s) 390, 1240, 2330
Hpy188III TCNNGA 4 cut(s) 82, 526, 1706, 1916
Hpy8I GTNNAC 3 cut(s) 274, 517, 2355
HpyCH4IV ACGT 5 cut(s) 160, 1500, 1710, 1920, 2145
HpyF10VI GCNNNNNNNGC 9 cut(s) 404, 413, 495, 1332, 1542, 1752, 2090, 2099, 2239
HpyF3I CTNAG 6 cut(s) 196, 243, 450, 954, 1490, 1910
HpySE526I ACGT 5 cut(s) 160, 1500, 1710, 1920, 2145
Hsp92I GRCGYC 2 cut(s) 1452, 1872
HspAI GCGC 1 cut(s) 51
Ksp22I TGATCA 2 cut(s) 741, 1713
Kzo9I GATC 5 cut(s) 741, 850, 1266, 1713, 2265
Lsp1109I GCAGC 2 cut(s) 493, 521
LweI GCATC 7 cut(s) 1201, 1411, 1621, 1651, 1831, 2022, 2071
MaeI CTAG 5 cut(s) 662, 710, 1059, 1332, 1730
MaeII ACGT 5 cut(s) 160, 1500, 1710, 1920, 2145
MaeIII GTNAC 8 cut(s) 14, 668, 729, 1004, 1084, 1399, 1609, 1819
MalI GATC 5 cut(s) 743, 852, 1268, 1715, 2267
MbiI CCGCTC 1 cut(s) 398
MboI GATC 5 cut(s) 741, 850, 1266, 1713, 2265
MboII GAAGA 6 cut(s) 155, 1243, 1271, 2090, 2318, 2321
MfeI CAATTG 1 cut(s) 58
MhlI GDGCHC 2 cut(s) 76, 630
MlsI TGGCCA 1 cut(s) 1755
MluNI TGGCCA 1 cut(s) 1755
MlyI GAGTC 4 cut(s) 1392, 1471, 1681, 1812
MmeI TCCRAC 3 cut(s) 160, 364, 1188
Mox20I TGGCCA 1 cut(s) 1755
Mph1103I ATGCAT 1 cut(s) 2320
MscI TGGCCA 1 cut(s) 1755
MslI CAYNNNNRTG 4 cut(s) 633, 1966, 2247, 2319
Msp20I TGGCCA 1 cut(s) 1755
MspA1I CMGCKG 1 cut(s) 1515
MspI CCGG 2 cut(s) 657, 1601
MspR9I CCNGG 1 cut(s) 657
MunI CAATTG 1 cut(s) 58
MwoI GCNNNNNNNGC 9 cut(s) 404, 413, 495, 1332, 1542, 1752, 2090, 2099, 2239
NciI CCSGG 1 cut(s) 657
NcoI CCATGG 2 cut(s) 27, 213
NdeII GATC 5 cut(s) 741, 850, 1266, 1713, 2265
NlaIV GGNNCC 3 cut(s) 75, 859, 1174
NmuCI GTSAC 2 cut(s) 1004, 1084
NsiI ATGCAT 1 cut(s) 2320
NspI RCATGY 5 cut(s) 634, 899, 1954, 2246, 2322
NspV TTCGAA 3 cut(s) 141, 837, 1257
PaeI GCATGC 1 cut(s) 2246
PciI ACATGT 1 cut(s) 630
PcsI WCGNNNNNNNCGW 2 cut(s) 391, 834
PfeI GAWTC 4 cut(s) 167, 391, 936, 1593
PkrI GCNGC 2 cut(s) 508, 511
PleI GAGTC 4 cut(s) 1391, 1471, 1681, 1811
PpsI GAGTC 4 cut(s) 1391, 1471, 1681, 1811
PscI ACATGT 1 cut(s) 630
PshBI ATTAAT 2 cut(s) 372, 576
PsiI TTATAA 2 cut(s) 572, 2193
Psp1406I AACGTT 2 cut(s) 160, 1500
PspFI CCCAGC 1 cut(s) 593
PspN4I GGNNCC 3 cut(s) 75, 859, 1174
PspPI GGNCC 6 cut(s) 517, 928, 1443, 1653, 1697, 1863
PstI CTGCAG 2 cut(s) 511, 1013
PstNI CAGNNNCTG 2 cut(s) 1008, 1040
PvuII CAGCTG 1 cut(s) 1515
RsaI GTAC 6 cut(s) 275, 355, 604, 759, 825, 1143
RsaNI GTAC 6 cut(s) 274, 354, 603, 758, 824, 1142
RseI CAYNNNNRTG 4 cut(s) 633, 1966, 2247, 2319
SatI GCNGC 2 cut(s) 507, 510
Sau3AI GATC 5 cut(s) 741, 850, 1266, 1713, 2265
Sau96I GGNCC 6 cut(s) 517, 928, 1443, 1653, 1697, 1863
ScaI AGTACT 1 cut(s) 825
SchI GAGTC 4 cut(s) 1392, 1471, 1681, 1812
ScrFI CCNGG 1 cut(s) 657
SduI GDGCHC 2 cut(s) 76, 630
SfaNI GCATC 7 cut(s) 1201, 1411, 1621, 1651, 1831, 2022, 2071
SfcI CTRYAG 2 cut(s) 507, 1009
SfuI TTCGAA 3 cut(s) 141, 837, 1257
SinI GGWCC 5 cut(s) 517, 1443, 1653, 1697, 1863
SmiMI CAYNNNNRTG 4 cut(s) 633, 1966, 2247, 2319
SmlI CTYRAG 1 cut(s) 623
SmoI CTYRAG 1 cut(s) 623
SphI GCATGC 1 cut(s) 2246
SsiI CCGC 5 cut(s) 174, 240, 398, 861, 1598
SspI AATATT 1 cut(s) 95
SspMI CTAG 5 cut(s) 662, 710, 1059, 1332, 1730
StyD4I CCNGG 1 cut(s) 655
StyI CCWWGG 5 cut(s) 27, 213, 1446, 1656, 1866
TaiI ACGT 5 cut(s) 163, 1503, 1713, 1923, 2148
TaqI TCGA 4 cut(s) 141, 394, 837, 1257
TatI WGTACW 3 cut(s) 273, 823, 1141
TfiI GAWTC 4 cut(s) 167, 391, 936, 1593
TscAI CASTG 9 cut(s) 15, 106, 276, 301, 519, 1013, 1465, 1675, 1885
TseFI GTSAC 2 cut(s) 1004, 1084
TseI GCWGC 2 cut(s) 506, 509
Tsp45I GTSAC 2 cut(s) 1004, 1084
TspGWI ACGGA 2 cut(s) 1259, 1666
TspRI CASTG 9 cut(s) 15, 106, 276, 301, 519, 1013, 1465, 1675, 1885
VpaK11BI GGWCC 5 cut(s) 517, 1443, 1653, 1697, 1863
VspI ATTAAT 2 cut(s) 372, 576
XapI RAATTY 3 cut(s) 554, 963, 1166
XceI RCATGY 5 cut(s) 634, 899, 1954, 2246, 2322
XspI CTAG 5 cut(s) 662, 710, 1059, 1332, 1730
ZrmI AGTACT 1 cut(s) 825
Zsp2I ATGCAT 1 cut(s) 2320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.