Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0009748

Physical Location & Seq

Genomic Coordinates Reverse (-)

26512890 .. 26517529

Gene Structure 4640 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG283000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGAGTTGCTTTGGGTGCTTCAGTCCTCGCCGGAAAGATGTTAGCAAGGTCGAAATTGATAATGGTACTAATCGATCCTCAGGTAGTGGAAGAGGAAGGGGAAACTTTGATGATACTGAGAGTGGGAAGGGAAAAGGAAAGGGTGGCAACAGCGCACAAAAGAGTGTGGCACGAAGCTTCACATTTCGCGAACTTGCAGCCGCCACTAAGGGATTTAAGGAAGTGAATTTGATTGGGGAAGGGGGCTTTGGAAGAGTTTACAAAGGTCGGCTTGAAGCAGGCCAGGTTGTTGCGATCAAACAACTTAATCATGACGGTCTTCAAGGATTTCAGGAGTTCATCGTGGAGGTTCTCATGTTAAGCCTACTACACCATACTAATCTCGTCACCTTGATCGGCTACTGTACTGATGGAGATCAAAGACTCTTAGTCTATGAGTACATGCCGAGGGGTAGCTTGGAAGATCATCTTTTTGATCTGAAACCTGATCAAGAGCCACTTTGCTGGGATACTCGAATTAAGATAGCTGTTGGTGCAGCACGGGGCCTTGAATATCTTCACTGCAAAGCTAACCCACCTGTCATCTACCGTGACTTGAAATCAGCAAATATATTGCTGGACGATCATTTCAATCCAAAGCTTTCGGACTTTGGACTTGCTAAACTTGGTCCTGTGGGAGATAACACCCATGTTTCAACCAGAGTTATGGGAACCTATGGATATTGTGCACCAGAATATGCTATGAGTGGCAAGTTGACTCTGAAATCTGATATTTATAGCTTTGGTGTGGTTATGTTGGAGTTGATTACTGGCAAGAAGGCAATTGACAACACTATGAAGCAAGGGGAACAGAACCTAGTAGCTTGGGTTAGTATCGTTTCTATTTCCTGTTTTCTTTCTACTTGCGACTATTTGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002221 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0002757 GO:0002758 GO:0002764 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009941 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0031967 GO:0031975 GO:0036211 GO:0038023 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

306

Amino Acids

33.6

Weight (kDa)

8.04

Isoelectric Point (pI)

23.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	73 - 286	2.2e-44	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	76 - 278	1.1e-43	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009748)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20650 AT1G76370
fragaria_vesca	FvH4_5g25320 FvH4_5g25320 FvH4_5g25320 FvH4_5g25320 FvH4_5g25320
malus_domestica	MD06G1009700.v1.1 MD16G1284800.v1.1
prunus_persica	Prupe.5G010800_v2.0.a1
pyrus_communis	pycom06g00800
rosa_chinensis	RchiOBHm_Chr7g0215541
rosa_laevigata	RLG00000002649
rosa_multiflora	Rmu_sc0000898.1_g000097 Rmu_sc0002094.1_g000022
rosa_roxburghii	Rroxscaffold_3G00244120
rosa_rugosa	Rorug04G0205900
rosa_samantha	Rh4CG281000 Rh4DG265000 Rh7BG283000
rosa_wichuraiana	Rw7G024820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	189
AciI	CCGC	1 cut(s)	201
AclWI	GGATC	1 cut(s)	69
AcsI	RAATTY	1 cut(s)	226
AcuI	CTGAAG	1 cut(s)	4
AfaI	GTAC	3 cut(s)	67, 406, 440
AgsI	TTSAA	6 cut(s)	275, 323, 551, 598, 631, 696
AhdI	GACNNNNNGTC	1 cut(s)	428
AjnI	CCWGG	1 cut(s)	282
AjuI	GAANNNNNNNTTGG	2 cut(s)	231, 263
AluBI	AGCT	7 cut(s)	177, 456, 527, 569, 640, 780, 863
AluI	AGCT	7 cut(s)	177, 456, 527, 569, 640, 780, 863
Alw21I	GWGCWC	1 cut(s)	730
Alw44I	GTGCAC	1 cut(s)	726
AlwI	GGATC	1 cut(s)	69
AoxI	GGCC	2 cut(s)	280, 544
ApaLI	GTGCAC	1 cut(s)	726
ApeKI	GCWGC	2 cut(s)	197, 536
ApoI	RAATTY	1 cut(s)	226
Asp700I	GAANNNNTTC	1 cut(s)	555
AspLEI	GCGC	1 cut(s)	155
AspS9I	GGNCC	2 cut(s)	544, 668
AsuHPI	GGTGA	1 cut(s)	379
AvaII	GGWCC	1 cut(s)	668
AxyI	CCTNAGG	1 cut(s)	79
BaeGI	GKGCMC	1 cut(s)	730
BbsI	GAAGAC	1 cut(s)	311
Bbv12I	GWGCWC	1 cut(s)	730
BbvI	GCAGC	2 cut(s)	209, 548
BccI	CCATC	1 cut(s)	404
BciT130I	CCWGG	1 cut(s)	284
BciVI	GTATCC	1 cut(s)	502
BclI	TGATCA	1 cut(s)	487
BfaI	CTAG	1 cut(s)	857
BfuI	GTATCC	1 cut(s)	502
BisI	GCNGC	3 cut(s)	198, 201, 537
BlsI	GCNGC	3 cut(s)	199, 202, 538
Bme1390I	CCNGG	1 cut(s)	284
Bme18I	GGWCC	1 cut(s)	668
BmeRI	GACNNNNNGTC	1 cut(s)	428
BmgT120I	GGNCC	2 cut(s)	544, 668
BmiI	GGNNCC	2 cut(s)	545, 712
BmrFI	CCNGG	1 cut(s)	284
BpiI	GAAGAC	1 cut(s)	311
Bsa29I	ATCGAT	1 cut(s)	73
BsaBI	GATNNNNATC	1 cut(s)	414
BsaJI	CCNNGG	1 cut(s)	446
Bse1I	ACTGG	1 cut(s)	814
Bse21I	CCTNAGG	1 cut(s)	79
Bse8I	GATNNNNATC	1 cut(s)	414
BseBI	CCWGG	1 cut(s)	284
BseCI	ATCGAT	1 cut(s)	73
BseDI	CCNNGG	1 cut(s)	446
BseJI	GATNNNNATC	1 cut(s)	414
BseMII	CTCAG	2 cut(s)	93, 108
BseNI	ACTGG	1 cut(s)	814
BseSI	GKGCMC	1 cut(s)	730
BseXI	GCAGC	2 cut(s)	209, 548
BseYI	CCCAGC	1 cut(s)	504
BsgI	GTGCAG	1 cut(s)	555
Bsh1236I	CGCG	1 cut(s)	189
BshFI	GGCC	2 cut(s)	282, 546
BshVI	ATCGAT	1 cut(s)	73
BsiHKAI	GWGCWC	1 cut(s)	730
BsiSI	CCGG	1 cut(s)	31
BsnI	GGCC	2 cut(s)	282, 546
Bsp1286I	GDGCHC	1 cut(s)	730
Bsp143I	GATC	8 cut(s)	74, 294, 393, 415, 463, 475, 487, 622
Bsp68I	TCGCGA	1 cut(s)	189
BspACI	CCGC	1 cut(s)	201
BspANI	GGCC	2 cut(s)	282, 546
BspCNI	CTCAG	2 cut(s)	92, 109
BspDI	ATCGAT	1 cut(s)	73
BspFNI	CGCG	1 cut(s)	189
BspHI	TCATGA	1 cut(s)	310
BspLI	GGNNCC	2 cut(s)	545, 712
BspPI	GGATC	1 cut(s)	69
BsrI	ACTGG	1 cut(s)	814
BssECI	CCNNGG	1 cut(s)	446
BssMI	GATC	8 cut(s)	74, 294, 393, 415, 463, 475, 487, 622
Bst2UI	CCWGG	1 cut(s)	284
Bst4CI	ACNGT	3 cut(s)	317, 404, 590
Bst6I	CTCTTC	2 cut(s)	85, 247
BstC8I	GCNNGC	1 cut(s)	280
BstDEI	CTNAG	4 cut(s)	79, 117, 207, 427
BstFNI	CGCG	1 cut(s)	189
BstHHI	GCGC	1 cut(s)	155
BstKTI	GATC	8 cut(s)	77, 297, 396, 418, 466, 478, 490, 625
BstMBI	GATC	8 cut(s)	74, 294, 393, 415, 463, 475, 487, 622
BstMWI	GCNNNNNNNGC	2 cut(s)	15, 533
BstNI	CCWGG	1 cut(s)	284
BstNSI	RCATGY	1 cut(s)	445
BstSCI	CCNGG	1 cut(s)	282
BstSLI	GKGCMC	1 cut(s)	730
BstUI	CGCG	1 cut(s)	189
BstV1I	GCAGC	2 cut(s)	209, 548
BstV2I	GAAGAC	1 cut(s)	311
BstXI	CCANNNNNNTGG	2 cut(s)	504, 706
Bsu15I	ATCGAT	1 cut(s)	73
Bsu36I	CCTNAGG	1 cut(s)	79
BsuI	GTATCC	1 cut(s)	502
BsuRI	GGCC	2 cut(s)	282, 546
BsuTUI	ATCGAT	1 cut(s)	73
BtsI	GCAGTG	1 cut(s)	559
BtsIMutI	CAGTG	1 cut(s)	559
BtuMI	TCGCGA	1 cut(s)	189
Cac8I	GCNNGC	1 cut(s)	280
CciI	TCATGA	1 cut(s)	310
CfoI	GCGC	1 cut(s)	155
Cfr13I	GGNCC	2 cut(s)	544, 668
ClaI	ATCGAT	1 cut(s)	73
Csp6I	GTAC	3 cut(s)	66, 405, 439
CviAII	CATG	4 cut(s)	311, 355, 442, 689
CviQI	GTAC	3 cut(s)	66, 405, 439
DdeI	CTNAG	4 cut(s)	79, 117, 207, 427
DpnI	GATC	8 cut(s)	76, 296, 395, 417, 465, 477, 489, 624
DpnII	GATC	8 cut(s)	74, 294, 393, 415, 463, 475, 487, 622
DriI	GACNNNNNGTC	1 cut(s)	428
Eam1104I	CTCTTC	2 cut(s)	85, 247
Eam1105I	GACNNNNNGTC	1 cut(s)	428
EarI	CTCTTC	2 cut(s)	85, 247
Eco47I	GGWCC	1 cut(s)	668
Eco57I	CTGAAG	1 cut(s)	4
Eco81I	CCTNAGG	1 cut(s)	79
EcoO109I	RGGNCCY	1 cut(s)	544
EcoRII	CCWGG	1 cut(s)	282
FaeI	CATG	4 cut(s)	314, 358, 445, 692
FalI	AAGNNNNNCTT	6 cut(s)	255, 287, 453, 485, 483, 515
FatI	CATG	4 cut(s)	310, 354, 441, 688
FbaI	TGATCA	1 cut(s)	487
Fnu4HI	GCNGC	3 cut(s)	198, 201, 537
Fsp4HI	GCNGC	3 cut(s)	198, 201, 537
FspBI	CTAG	1 cut(s)	857
GlaI	GCGC	1 cut(s)	154
GluI	GCNGC	3 cut(s)	198, 201, 537
GsaI	CCCAGC	1 cut(s)	508
HaeIII	GGCC	2 cut(s)	282, 546
HapII	CCGG	1 cut(s)	31
HhaI	GCGC	1 cut(s)	155
Hin1II	CATG	4 cut(s)	314, 358, 445, 692
Hin6I	GCGC	1 cut(s)	153
HinP1I	GCGC	1 cut(s)	153
HincII	GTYRAC	1 cut(s)	756
HindII	GTYRAC	1 cut(s)	756
HindIII	AAGCTT	2 cut(s)	175, 638
HinfI	GANTC	2 cut(s)	423, 757
HpaII	CCGG	1 cut(s)	31
HphI	GGTGA	1 cut(s)	379
Hpy166II	GTNNAC	3 cut(s)	259, 728, 756
Hpy188I	TCNGA	4 cut(s)	480, 646, 762, 769
Hpy188III	TCNNGA	4 cut(s)	188, 311, 332, 491
Hpy8I	GTNNAC	3 cut(s)	259, 728, 756
HpyAV	CCTTC	4 cut(s)	90, 121, 233, 811
HpyCH4III	ACNGT	3 cut(s)	317, 404, 590
HpyCH4V	TGCA	4 cut(s)	197, 536, 564, 728
HpyF10VI	GCNNNNNNNGC	2 cut(s)	15, 533
HpyF3I	CTNAG	4 cut(s)	79, 117, 207, 427
Hsp92II	CATG	4 cut(s)	314, 358, 445, 692
HspAI	GCGC	1 cut(s)	153
Ksp22I	TGATCA	1 cut(s)	487
Kzo9I	GATC	8 cut(s)	74, 294, 393, 415, 463, 475, 487, 622
Lsp1109I	GCAGC	2 cut(s)	209, 548
MaeI	CTAG	1 cut(s)	857
MaeIII	GTNAC	2 cut(s)	385, 590
MalI	GATC	8 cut(s)	76, 296, 395, 417, 465, 477, 489, 624
MboI	GATC	8 cut(s)	74, 294, 393, 415, 463, 475, 487, 622
MboII	GAAGA	5 cut(s)	102, 264, 311, 473, 548
MfeI	CAATTG	1 cut(s)	822
MhlI	GDGCHC	1 cut(s)	730
MluCI	AATT	4 cut(s)	54, 226, 516, 822
MlyI	GAGTC	2 cut(s)	417, 751
MmeI	TCCRAC	1 cut(s)	777
MnlI	CCTC	5 cut(s)	36, 86, 88, 340, 441
MroXI	GAANNNNTTC	1 cut(s)	555
MseI	TTAA	4 cut(s)	216, 306, 359, 519
MspI	CCGG	1 cut(s)	31
MspR9I	CCNGG	1 cut(s)	284
MunI	CAATTG	1 cut(s)	822
MvaI	CCWGG	1 cut(s)	284
MvnI	CGCG	1 cut(s)	189
MwoI	GCNNNNNNNGC	2 cut(s)	15, 533
NdeII	GATC	8 cut(s)	74, 294, 393, 415, 463, 475, 487, 622
NlaIII	CATG	4 cut(s)	314, 358, 445, 692
NlaIV	GGNNCC	2 cut(s)	545, 712
NmeAIII	GCCGAG	1 cut(s)	471
NmuCI	GTSAC	2 cut(s)	385, 590
NruI	TCGCGA	1 cut(s)	189
NspI	RCATGY	1 cut(s)	445
PagI	TCATGA	1 cut(s)	310
PdmI	GAANNNNTTC	1 cut(s)	555
PkrI	GCNGC	3 cut(s)	199, 202, 538
PleI	GAGTC	2 cut(s)	417, 751
PpsI	GAGTC	2 cut(s)	417, 751
Psp6I	CCWGG	1 cut(s)	282
PspFI	CCCAGC	1 cut(s)	504
PspGI	CCWGG	1 cut(s)	282
PspN4I	GGNNCC	2 cut(s)	545, 712
PspPI	GGNCC	2 cut(s)	544, 668
RruI	TCGCGA	1 cut(s)	189
RsaI	GTAC	3 cut(s)	67, 406, 440
RsaNI	GTAC	3 cut(s)	66, 405, 439
SaqAI	TTAA	4 cut(s)	216, 306, 359, 519
SatI	GCNGC	3 cut(s)	198, 201, 537
Sau3AI	GATC	8 cut(s)	74, 294, 393, 415, 463, 475, 487, 622
Sau96I	GGNCC	2 cut(s)	544, 668
SchI	GAGTC	2 cut(s)	417, 751
ScrFI	CCNGG	1 cut(s)	284
SduI	GDGCHC	1 cut(s)	730
SinI	GGWCC	1 cut(s)	668
Sse9I	AATT	4 cut(s)	54, 226, 516, 822
SsiI	CCGC	1 cut(s)	201
SspMI	CTAG	1 cut(s)	857
StyD4I	CCNGG	1 cut(s)	282
TaaI	ACNGT	3 cut(s)	317, 404, 590
TaqI	TCGA	3 cut(s)	51, 73, 514
TasI	AATT	4 cut(s)	54, 226, 516, 822
TatI	WGTACW	2 cut(s)	404, 438
TauI	GCSGC	1 cut(s)	203
Tru1I	TTAA	4 cut(s)	216, 306, 359, 519
Tru9I	TTAA	4 cut(s)	216, 306, 359, 519
TscAI	CASTG	1 cut(s)	566
TseFI	GTSAC	2 cut(s)	385, 590
TseI	GCWGC	2 cut(s)	197, 536
Tsp45I	GTSAC	2 cut(s)	385, 590
TspDTI	ATGAA	2 cut(s)	328, 851
TspRI	CASTG	1 cut(s)	566
VneI	GTGCAC	1 cut(s)	726
VpaK11BI	GGWCC	1 cut(s)	668
XapI	RAATTY	1 cut(s)	226
XceI	RCATGY	1 cut(s)	445
XmnI	GAANNNNTTC	1 cut(s)	555
XspI	CTAG	1 cut(s)	857

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.