Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0009748

Physical Location & Seq

Genomic Coordinates Forward (+)

40508028 .. 40512994

Gene Structure 4967 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1284800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGAGTTGCTTTCGTTGCTTCAGTCCCCACCGGAAAGATGTCAGCAAGGTCGAAATCGATAACGGCACTCGATCCTCCGCATGTGGTGGGAGAGGCAAAGGAATTCCCGATGACAGTGAGTGTGGGAGGGGAAAAGGCAGAAATGTGGCACGAAGTTTCACATTTCGCGAACTTGCAGCAGCCAGCAAAGGCTTTAGGGAAGTGAATTTGATTGGGGAAGGAGGTTTTGGAAGGGTTTACAAAGGCCGGCTTGATGCAGGCCAGGTTGTCGCAATTAAACAACTTAATCATGACGGTCTTCAAGGGTTCCAAGAATTCATCGTGGAGGTTCTCATGTTAAGCCTGCTACACCATACAAATCTAGTCACCTTGATTGGCTACTGTACTGACGGAGATCAGAGACTCTTAGTCTATGAGTACATGCCGAGGGGTAGCTTGGAAGATCATCTTTTTGATCTTAGTCCTGGTCGAGAGACACTGAGTTGGGACACGCGAATTAAGATAGCTGTTGGTGCAGCACGGGGCCTTGAATACCTCCACTGCAAAGCTAACCCGCCAGTTATCTACCGTGACTTGAAATCAGCAAATATACTGCTGGACGATGAATTCAATCCAAAGCTTTCAGATTTTGGGCTTGCTAAACTTGCACCTGTGGGTGACAAAACTCATGTCTCAACAAGAGTGATGGGAACGTATGGGTACTGTGCGCCAGAATATGCCATGAGCGGCAAGTTGACTCTGAAATCAGATATTTATAGCCTTGGTGTGGTTATGTTGGAGCTGATTACAGGGAAGAAGGCAATTGACTGCTCTAAGAGGCCAGGAGAACAGAACTTAGTGTCTTGGTCTCGTCCATTTTTGAAGGATCGGAGGAAGTTTGTCCAATTAGTTGATCCTCTGTTGCAAGGACGTTTCCCAGTTCGTTGTTTGCATCATGCAGTTGCCATTACTGCCATGTGTCTACAAGAGCAACCAACTTTCCGTCCTCTTATTAGTGATATTGTTGTAGCACTTGAGTTCTTGGCGTCCCAGAGCAACAAACCTGACCCTCGAAGAGCTGGGGTCCATAGTCCCTTTTCGGCATCACCTTCACAGCAAAACAGGGATATTTTCTCTCAGGATTCTGATTGCAGAATGAGTTCAACTTCTACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002221 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0002757 GO:0002758 GO:0002764 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009941 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0031967 GO:0031975 GO:0036211 GO:0038023 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

385

Amino Acids

42.52

Weight (kDa)

8.89

Isoelectric Point (pI)

43.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	66 - 275	5e-45	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	69 - 337	5.6e-44	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009748)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20650 AT1G76370
fragaria_vesca	FvH4_5g25320 FvH4_5g25320 FvH4_5g25320 FvH4_5g25320 FvH4_5g25320
malus_domestica	MD06G1009700.v1.1 MD16G1284800.v1.1
prunus_persica	Prupe.5G010800_v2.0.a1
pyrus_communis	pycom06g00800
rosa_chinensis	RchiOBHm_Chr7g0215541
rosa_laevigata	RLG00000002649
rosa_multiflora	Rmu_sc0000898.1_g000097 Rmu_sc0002094.1_g000022
rosa_roxburghii	Rroxscaffold_3G00244120
rosa_rugosa	Rorug04G0205900
rosa_samantha	Rh4CG281000 Rh4DG265000 Rh7BG283000
rosa_wichuraiana	Rw7G024820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	726
AccI	GTMKAC	1 cut(s)	961
AccII	CGCG	2 cut(s)	168, 493
AciI	CCGC	3 cut(s)	78, 554, 726
AclWI	GGATC	3 cut(s)	66, 873, 887
AcsI	RAATTY	4 cut(s)	102, 205, 314, 605
AcuI	CTGAAG	1 cut(s)	4
AcyI	GRCGYC	1 cut(s)	1025
AfaI	GTAC	3 cut(s)	385, 419, 701
AfiI	CCNNNNNNNGG	1 cut(s)	766
AgsI	TTSAA	6 cut(s)	302, 530, 577, 610, 862, 1143
AhdI	GACNNNNNGTC	1 cut(s)	407
AjnI	CCWGG	3 cut(s)	261, 463, 820
AjuI	GAANNNNNNNTTGG	2 cut(s)	210, 242
AluBI	AGCT	6 cut(s)	435, 506, 548, 619, 781, 1058
AluI	AGCT	6 cut(s)	435, 506, 548, 619, 781, 1058
Alw26I	GTCTC	4 cut(s)	394, 467, 676, 852
AlwI	GGATC	3 cut(s)	66, 873, 887
AoxI	GGCC	4 cut(s)	244, 259, 523, 818
ApeKI	GCWGC	3 cut(s)	176, 179, 515
ApoI	RAATTY	4 cut(s)	102, 205, 314, 605
ArsI	GACNNNNNNTTYG	2 cut(s)	654, 686
Asp700I	GAANNNNTTC	1 cut(s)	1138
AspLEI	GCGC	1 cut(s)	709
AspS9I	GGNCC	2 cut(s)	523, 1063
AsuHPI	GGTGA	3 cut(s)	358, 668, 1077
AvaII	GGWCC	1 cut(s)	1063
BbsI	GAAGAC	1 cut(s)	290
BbvI	GCAGC	3 cut(s)	188, 191, 527
BccI	CCATC	1 cut(s)	679
BceAI	ACGGC	1 cut(s)	79
BciT130I	CCWGG	3 cut(s)	263, 465, 822
BcoDI	GTCTC	4 cut(s)	394, 467, 676, 852
BfaI	CTAG	1 cut(s)	362
BisI	GCNGC	4 cut(s)	177, 180, 516, 727
BlsI	GCNGC	4 cut(s)	178, 181, 517, 728
Bme1390I	CCNGG	3 cut(s)	263, 465, 822
Bme18I	GGWCC	1 cut(s)	1063
BmeRI	GACNNNNNGTC	1 cut(s)	407
BmgT120I	GGNCC	2 cut(s)	523, 1063
BmiI	GGNNCC	3 cut(s)	308, 524, 1064
BmrFI	CCNGG	3 cut(s)	263, 465, 822
BmrI	ACTGGG	1 cut(s)	911
BmsI	GCATC	3 cut(s)	244, 940, 1091
BmuI	ACTGGG	1 cut(s)	911
BpiI	GAAGAC	1 cut(s)	290
BpuEI	CTTGAG	1 cut(s)	1034
Bsa29I	ATCGAT	1 cut(s)	57
BsaHI	GRCGYC	1 cut(s)	1025
BsaI	GGTCTC	1 cut(s)	852
BsaJI	CCNNGG	2 cut(s)	425, 760
BsaWI	WCCGGW	1 cut(s)	30
Bsc4I	CCNNNNNNNGG	1 cut(s)	766
Bse118I	RCCGGY	1 cut(s)	246
Bse1I	ACTGG	2 cut(s)	557, 917
BseBI	CCWGG	3 cut(s)	263, 465, 822
BseCI	ATCGAT	1 cut(s)	57
BseDI	CCNNGG	2 cut(s)	425, 760
BseLI	CCNNNNNNNGG	1 cut(s)	766
BseMII	CTCAG	2 cut(s)	470, 1130
BseNI	ACTGG	2 cut(s)	557, 917
BseXI	GCAGC	3 cut(s)	188, 191, 527
BseYI	CCCAGC	1 cut(s)	1058
BsgI	GTGCAG	1 cut(s)	534
Bsh1236I	CGCG	2 cut(s)	168, 493
BshFI	GGCC	4 cut(s)	246, 261, 525, 820
BshVI	ATCGAT	1 cut(s)	57
BsiSI	CCGG	2 cut(s)	31, 247
BslFI	GGGAC	4 cut(s)	9, 500, 1012, 1056
BslI	CCNNNNNNNGG	1 cut(s)	766
BsmAI	GTCTC	4 cut(s)	394, 467, 676, 852
BsmFI	GGGAC	4 cut(s)	9, 500, 1012, 1056
BsnI	GGCC	4 cut(s)	246, 261, 525, 820
Bso31I	GGTCTC	1 cut(s)	852
Bsp143I	GATC	6 cut(s)	71, 394, 442, 454, 865, 892
Bsp68I	TCGCGA	1 cut(s)	168
BspACI	CCGC	3 cut(s)	78, 554, 726
BspANI	GGCC	4 cut(s)	246, 261, 525, 820
BspCNI	CTCAG	2 cut(s)	471, 1129
BspDI	ATCGAT	1 cut(s)	57
BspFNI	CGCG	2 cut(s)	168, 493
BspHI	TCATGA	1 cut(s)	289
BspLI	GGNNCC	3 cut(s)	308, 524, 1064
BspPI	GGATC	3 cut(s)	66, 873, 887
BspQI	GCTCTTC	1 cut(s)	1048
BspTNI	GGTCTC	1 cut(s)	852
BsrBI	CCGCTC	1 cut(s)	726
BsrFI	RCCGGY	1 cut(s)	246
BsrI	ACTGG	2 cut(s)	557, 917
BssAI	RCCGGY	1 cut(s)	246
BssECI	CCNNGG	2 cut(s)	425, 760
BssMI	GATC	6 cut(s)	71, 394, 442, 454, 865, 892
BssNI	GRCGYC	1 cut(s)	1025
BssT1I	CCWWGG	1 cut(s)	760
Bst2UI	CCWGG	3 cut(s)	263, 465, 822
Bst4CI	ACNGT	5 cut(s)	116, 296, 383, 569, 704
Bst6I	CTCTTC	1 cut(s)	1048
BstACI	GRCGYC	1 cut(s)	1025
BstC8I	GCNNGC	5 cut(s)	184, 248, 259, 344, 636
BstDEI	CTNAG	7 cut(s)	406, 458, 479, 813, 835, 1116, 1152
BstFNI	CGCG	2 cut(s)	168, 493
BstHHI	GCGC	1 cut(s)	709
BstKTI	GATC	6 cut(s)	74, 397, 445, 457, 868, 895
BstMAI	GTCTC	4 cut(s)	394, 467, 676, 852
BstMBI	GATC	6 cut(s)	71, 394, 442, 454, 865, 892
BstMWI	GCNNNNNNNGC	4 cut(s)	15, 512, 644, 950
BstNI	CCWGG	3 cut(s)	263, 465, 822
BstNSI	RCATGY	2 cut(s)	84, 424
BstSCI	CCNGG	3 cut(s)	261, 463, 820
BstUI	CGCG	2 cut(s)	168, 493
BstV1I	GCAGC	3 cut(s)	188, 191, 527
BstV2I	GAAGAC	1 cut(s)	290
Bsu15I	ATCGAT	1 cut(s)	57
BsuRI	GGCC	4 cut(s)	246, 261, 525, 820
BsuTUI	ATCGAT	1 cut(s)	57
BtsI	GCAGTG	1 cut(s)	538
BtsIMutI	CAGTG	3 cut(s)	121, 476, 538
BtuMI	TCGCGA	1 cut(s)	168
Cac8I	GCNNGC	5 cut(s)	184, 248, 259, 344, 636
CciI	TCATGA	1 cut(s)	289
CfoI	GCGC	1 cut(s)	709
Cfr10I	RCCGGY	1 cut(s)	246
Cfr13I	GGNCC	2 cut(s)	523, 1063
ClaI	ATCGAT	1 cut(s)	57
CseI	GACGC	1 cut(s)	1014
Csp6I	GTAC	3 cut(s)	384, 418, 700
CviAII	CATG	8 cut(s)	81, 290, 334, 421, 668, 721, 935, 955
CviQI	GTAC	3 cut(s)	384, 418, 700
DdeI	CTNAG	7 cut(s)	406, 458, 479, 813, 835, 1116, 1152
DpnI	GATC	6 cut(s)	73, 396, 444, 456, 867, 894
DpnII	GATC	6 cut(s)	71, 394, 442, 454, 865, 892
DriI	GACNNNNNGTC	1 cut(s)	407
Eam1104I	CTCTTC	1 cut(s)	1048
Eam1105I	GACNNNNNGTC	1 cut(s)	407
EarI	CTCTTC	1 cut(s)	1048
Eco130I	CCWWGG	1 cut(s)	760
Eco31I	GGTCTC	1 cut(s)	852
Eco47I	GGWCC	1 cut(s)	1063
Eco57I	CTGAAG	1 cut(s)	4
EcoO109I	RGGNCCY	1 cut(s)	523
EcoRI	GAATTC	3 cut(s)	102, 314, 605
EcoRII	CCWGG	3 cut(s)	261, 463, 820
EcoT14I	CCWWGG	1 cut(s)	760
ErhI	CCWWGG	1 cut(s)	760
FaeI	CATG	8 cut(s)	84, 293, 337, 424, 671, 724, 938, 958
FalI	AAGNNNNNCTT	4 cut(s)	234, 266, 432, 464
FaqI	GGGAC	4 cut(s)	9, 500, 1012, 1056
FatI	CATG	8 cut(s)	80, 289, 333, 420, 667, 720, 934, 954
FauI	CCCGC	1 cut(s)	561
FblI	GTMKAC	1 cut(s)	961
Fnu4HI	GCNGC	4 cut(s)	177, 180, 516, 727
Fsp4HI	GCNGC	4 cut(s)	177, 180, 516, 727
FspBI	CTAG	1 cut(s)	362
GlaI	GCGC	1 cut(s)	708
GluI	GCNGC	4 cut(s)	177, 180, 516, 727
GsaI	CCCAGC	1 cut(s)	1062
HaeIII	GGCC	4 cut(s)	246, 261, 525, 820
HapII	CCGG	2 cut(s)	31, 247
HgaI	GACGC	1 cut(s)	1014
HhaI	GCGC	1 cut(s)	709
Hin1I	GRCGYC	1 cut(s)	1025
Hin1II	CATG	8 cut(s)	84, 293, 337, 424, 671, 724, 938, 958
Hin6I	GCGC	1 cut(s)	707
HinP1I	GCGC	1 cut(s)	707
HincII	GTYRAC	1 cut(s)	735
HindII	GTYRAC	1 cut(s)	735
HindIII	AAGCTT	1 cut(s)	617
HinfI	GANTC	3 cut(s)	402, 736, 1121
HpaII	CCGG	2 cut(s)	31, 247
HphI	GGTGA	3 cut(s)	358, 668, 1077
Hpy166II	GTNNAC	3 cut(s)	238, 735, 962
Hpy188I	TCNGA	6 cut(s)	399, 625, 741, 748, 870, 1126
Hpy188III	TCNNGA	5 cut(s)	107, 167, 290, 470, 1118
Hpy8I	GTNNAC	3 cut(s)	238, 735, 962
HpyAV	CCTTC	5 cut(s)	212, 225, 790, 856, 1098
HpyCH4III	ACNGT	5 cut(s)	116, 296, 383, 569, 704
HpyCH4IV	ACGT	2 cut(s)	692, 910
HpyCH4V	TGCA	9 cut(s)	176, 257, 515, 543, 647, 904, 931, 938, 1131
HpyF10VI	GCNNNNNNNGC	4 cut(s)	15, 512, 644, 950
HpyF3I	CTNAG	7 cut(s)	406, 458, 479, 813, 835, 1116, 1152
HpySE526I	ACGT	2 cut(s)	692, 910
Hsp92I	GRCGYC	1 cut(s)	1025
Hsp92II	CATG	8 cut(s)	84, 293, 337, 424, 671, 724, 938, 958
HspAI	GCGC	1 cut(s)	707
KroI	GCCGGC	1 cut(s)	246
KroNI	GCCGGC	1 cut(s)	248
Kzo9I	GATC	6 cut(s)	71, 394, 442, 454, 865, 892
LguI	GCTCTTC	1 cut(s)	1048
LmnI	GCTCC	1 cut(s)	778
Lsp1109I	GCAGC	3 cut(s)	188, 191, 527
LweI	GCATC	3 cut(s)	244, 940, 1091
MaeI	CTAG	1 cut(s)	362
MaeII	ACGT	2 cut(s)	692, 910
MaeIII	GTNAC	3 cut(s)	364, 569, 656
MalI	GATC	6 cut(s)	73, 396, 444, 456, 867, 894
MbiI	CCGCTC	1 cut(s)	726
MboI	GATC	6 cut(s)	71, 394, 442, 454, 865, 892
MboII	GAAGA	4 cut(s)	290, 452, 805, 1065
MfeI	CAATTG	1 cut(s)	801
MluCI	AATT	8 cut(s)	102, 205, 273, 314, 495, 605, 801, 884
MlyI	GAGTC	2 cut(s)	396, 730
MmeI	TCCRAC	1 cut(s)	756
MroNI	GCCGGC	1 cut(s)	246
MroXI	GAANNNNTTC	1 cut(s)	1138
MseI	TTAA	4 cut(s)	276, 285, 338, 498
MspI	CCGG	2 cut(s)	31, 247
MspR9I	CCNGG	3 cut(s)	263, 465, 822
MunI	CAATTG	1 cut(s)	801
MvaI	CCWGG	3 cut(s)	263, 465, 822
MvnI	CGCG	2 cut(s)	168, 493
MwoI	GCNNNNNNNGC	4 cut(s)	15, 512, 644, 950
NaeI	GCCGGC	1 cut(s)	248
NdeII	GATC	6 cut(s)	71, 394, 442, 454, 865, 892
NgoMIV	GCCGGC	1 cut(s)	246
NlaIII	CATG	8 cut(s)	84, 293, 337, 424, 671, 724, 938, 958
NlaIV	GGNNCC	3 cut(s)	308, 524, 1064
NmeAIII	GCCGAG	1 cut(s)	450
NmuCI	GTSAC	3 cut(s)	364, 569, 656
NruI	TCGCGA	1 cut(s)	168
NspI	RCATGY	2 cut(s)	84, 424
PagI	TCATGA	1 cut(s)	289
PciSI	GCTCTTC	1 cut(s)	1048
PdiI	GCCGGC	1 cut(s)	248
PdmI	GAANNNNTTC	1 cut(s)	1138
PfeI	GAWTC	1 cut(s)	1121
PkrI	GCNGC	4 cut(s)	178, 181, 517, 728
PleI	GAGTC	2 cut(s)	396, 730
PpsI	GAGTC	2 cut(s)	396, 730
Psp6I	CCWGG	3 cut(s)	261, 463, 820
PspFI	CCCAGC	1 cut(s)	1058
PspGI	CCWGG	3 cut(s)	261, 463, 820
PspN4I	GGNNCC	3 cut(s)	308, 524, 1064
PspPI	GGNCC	2 cut(s)	523, 1063
RruI	TCGCGA	1 cut(s)	168
RsaI	GTAC	3 cut(s)	385, 419, 701
RsaNI	GTAC	3 cut(s)	384, 418, 700
SapI	GCTCTTC	1 cut(s)	1048
SaqAI	TTAA	4 cut(s)	276, 285, 338, 498
SatI	GCNGC	4 cut(s)	177, 180, 516, 727
Sau3AI	GATC	6 cut(s)	71, 394, 442, 454, 865, 892
Sau96I	GGNCC	2 cut(s)	523, 1063
SchI	GAGTC	2 cut(s)	396, 730
ScrFI	CCNGG	3 cut(s)	263, 465, 822
SfaNI	GCATC	3 cut(s)	244, 940, 1091
SinI	GGWCC	1 cut(s)	1063
SmlI	CTYRAG	1 cut(s)	1013
SmoI	CTYRAG	1 cut(s)	1013
Sse9I	AATT	8 cut(s)	102, 205, 273, 314, 495, 605, 801, 884
SsiI	CCGC	3 cut(s)	78, 554, 726
SspMI	CTAG	1 cut(s)	362
StyD4I	CCNGG	3 cut(s)	261, 463, 820
StyI	CCWWGG	1 cut(s)	760
TaaI	ACNGT	5 cut(s)	116, 296, 383, 569, 704
TaiI	ACGT	2 cut(s)	695, 913
TaqI	TCGA	5 cut(s)	51, 57, 70, 469, 1051
TasI	AATT	8 cut(s)	102, 205, 273, 314, 495, 605, 801, 884
TatI	WGTACW	2 cut(s)	383, 417
TauI	GCSGC	1 cut(s)	729
TfiI	GAWTC	1 cut(s)	1121
Tru1I	TTAA	4 cut(s)	276, 285, 338, 498
Tru9I	TTAA	4 cut(s)	276, 285, 338, 498
TscAI	CASTG	3 cut(s)	121, 483, 545
TseFI	GTSAC	3 cut(s)	364, 569, 656
TseI	GCWGC	3 cut(s)	176, 179, 515
Tsp45I	GTSAC	3 cut(s)	364, 569, 656
TspDTI	ATGAA	2 cut(s)	307, 618
TspGWI	ACGGA	2 cut(s)	405, 971
TspRI	CASTG	3 cut(s)	121, 483, 545
VpaK11BI	GGWCC	1 cut(s)	1063
XapI	RAATTY	4 cut(s)	102, 205, 314, 605
XceI	RCATGY	2 cut(s)	84, 424
XmiI	GTMKAC	1 cut(s)	961
XmnI	GAANNNNTTC	1 cut(s)	1138
XspI	CTAG	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.