Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0009748

Physical Location & Seq

Genomic Coordinates Reverse (-)

16817542 .. 16823985

Gene Structure 6444 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g25320.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGAGTTGCTTCGGGTGCTTCGGTTCTCGCCGGAAAGATGTTAGCAAGGTCGAAATTGATAATGGTACTACTCGATCCTCAGGTAGTGGAAGAGGAAGGGGACACTTTGATGATGCTGAGAGTGGGAAGGGAAAAGGGAAGGGTGGCAACAGTGCGCAGAAGAGTGTGGCAAGAAGTTTCACATTTCGCGAACTTGCAGCAGCCACTAAGGGATTTAGGGAAGTGAATTTGATTGGGGAAGGGGGCTTTGGAAGGGTTTACAAAGGTCGGCTTGAAGCAGGCCAGGCAAGTTGCATGGTTGTTGCGATCAAACAACTTAATCATGACGGTCTTCAAGGATTTCAGGAATTCATCGTGGAGGTTCTCATGTTAAGCCTACTACACCATACTAATCTCGTCACCTTGATCGGCTACTGTACTGATGGAGATCAAAGACTCTTAGTCTATGAGTACTTGCCGAGGGGTAGCTTGGAAGATCATCTTTTTGATCTGAATCCTGATCAAGAGCCACTTAGTTGGGATACTCGAATTAAGATAGCTGTTGGTGCAGCACGGGGCCTTGAATATCTTCACTGCAAAGCTAACCCACCTGTTATCTACCGTGACTTGAAATCAGCAAATATATTGTTGGATGATCATTTCAATCCAAAGCTTTCAGACTTTGGACTTGCTAAGCTTGGGCCTGTGGGAGATAACACCCATGTTTCAACCAGAGTTATGGGAACCTATGGATACTGTGCACCAGAATATGCTATGAGTGGCAAGTTGACTCTTAAATCTGATATTTATAGCTTTGGTGTGGTTATGTTGGAGTTGATAACTGGCAAGAAGGCTATTGACAGCACTAAGAAGCAAGGAGAACAGAACCTAGTAGCTTGGTCTCGTCCATTCTTGAAAGACCGAAGGAAGTTTGTCCAGTTAGTCGATCCTTTATTGCAAGGAAGATTCCCGGTTCGTTGTTTGCATCATGCAGTTGCTATTACTGCCATGTGTCTTCAAGAGCAACCAACTTTCCGCCCTCTTATCAGTGATATTGTTGTAGCACTTGAATACTTGGTTTCACAGAACAACAAACCGGGCAAAGCTGAGGTTCATAGTCCCATTTCTTCATCACCGTCGCAGAAGTACAGGGATACCTTTTCTCGGGAATCAGATTGTAGAATGAGTTCAACTTCTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002221 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0002757 GO:0002758 GO:0002764 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009941 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0031967 GO:0031975 GO:0036211 GO:0038023 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

394

Amino Acids

43.35

Weight (kDa)

8.93

Isoelectric Point (pI)

36.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	67 - 330	1.4e-44	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	70 - 338	1.9e-44	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009748)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20650 AT1G76370
fragaria_vesca	FvH4_5g25320 FvH4_5g25320 FvH4_5g25320 FvH4_5g25320 FvH4_5g25320
malus_domestica	MD06G1009700.v1.1 MD16G1284800.v1.1
prunus_persica	Prupe.5G010800_v2.0.a1
pyrus_communis	pycom06g00800
rosa_chinensis	RchiOBHm_Chr7g0215541
rosa_laevigata	RLG00000002649
rosa_multiflora	Rmu_sc0000898.1_g000097 Rmu_sc0002094.1_g000022
rosa_roxburghii	Rroxscaffold_3G00244120
rosa_rugosa	Rorug04G0205900
rosa_samantha	Rh4CG281000 Rh4DG265000 Rh7BG283000
rosa_wichuraiana	Rw7G024820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	156
AccII	CGCG	1 cut(s)	189
AciI	CCGC	1 cut(s)	1015
AclWI	GGATC	2 cut(s)	69, 920
AcsI	RAATTY	2 cut(s)	226, 347
AfaI	GTAC	4 cut(s)	67, 418, 452, 1127
AfiI	CCNNNNNNNGG	1 cut(s)	1143
AhdI	GACNNNNNGTC	1 cut(s)	440
AjnI	CCWGG	1 cut(s)	282
AjuI	GAANNNNNNNTTGG	2 cut(s)	231, 263
AluBI	AGCT	9 cut(s)	468, 539, 581, 652, 676, 792, 875, 1085, 1179
AluI	AGCT	9 cut(s)	468, 539, 581, 652, 676, 792, 875, 1085, 1179
Alw21I	GWGCWC	1 cut(s)	742
Alw26I	GTCTC	1 cut(s)	885
Alw44I	GTGCAC	1 cut(s)	738
AlwI	GGATC	2 cut(s)	69, 920
Ama87I	CYCGRG	1 cut(s)	1143
AoxI	GGCC	3 cut(s)	280, 556, 680
ApaLI	GTGCAC	1 cut(s)	738
ApeKI	GCWGC	3 cut(s)	197, 200, 548
ApoI	RAATTY	2 cut(s)	226, 347
Asp700I	GAANNNNTTC	2 cut(s)	567, 1165
AspLEI	GCGC	1 cut(s)	157
AspS9I	GGNCC	2 cut(s)	556, 680
AsuC2I	CCSGG	2 cut(s)	950, 1077
AsuHPI	GGTGA	2 cut(s)	391, 1104
AvaI	CYCGRG	1 cut(s)	1143
AxyI	CCTNAGG	1 cut(s)	79
BaeGI	GKGCMC	1 cut(s)	742
BbsI	GAAGAC	2 cut(s)	323, 986
Bbv12I	GWGCWC	1 cut(s)	742
BbvCI	CCTCAGC	1 cut(s)	1086
BbvI	GCAGC	3 cut(s)	209, 212, 560
BccI	CCATC	1 cut(s)	416
BciT130I	CCWGG	1 cut(s)	284
BciVI	GTATCC	3 cut(s)	514, 725, 1126
BclI	TGATCA	2 cut(s)	499, 634
BcnI	CCSGG	2 cut(s)	950, 1077
BcoDI	GTCTC	1 cut(s)	885
BfaI	CTAG	3 cut(s)	869, 1176, 1180
BfuI	GTATCC	3 cut(s)	514, 725, 1126
BisI	GCNGC	3 cut(s)	198, 201, 549
BlpI	GCTNAGC	1 cut(s)	672
BlsI	GCNGC	3 cut(s)	199, 202, 550
BmcAI	AGTACT	1 cut(s)	452
Bme1390I	CCNGG	3 cut(s)	284, 950, 1077
BmeRI	GACNNNNNGTC	1 cut(s)	440
BmeT110I	CYCGRG	1 cut(s)	1143
BmgT120I	GGNCC	2 cut(s)	556, 680
BmiI	GGNNCC	2 cut(s)	557, 724
BmrFI	CCNGG	3 cut(s)	284, 950, 1077
BmsI	GCATC	2 cut(s)	103, 973
BpiI	GAAGAC	2 cut(s)	323, 986
Bpu10I	CCTNAGC	1 cut(s)	1086
Bpu1102I	GCTNAGC	1 cut(s)	672
BpuMI	CCSGG	2 cut(s)	950, 1077
BsaBI	GATNNNNATC	2 cut(s)	426, 492
BsaI	GGTCTC	1 cut(s)	885
BsaJI	CCNNGG	1 cut(s)	458
Bsc4I	CCNNNNNNNGG	1 cut(s)	1143
Bse1I	ACTGG	2 cut(s)	826, 916
Bse21I	CCTNAGG	1 cut(s)	79
Bse8I	GATNNNNATC	2 cut(s)	426, 492
BseBI	CCWGG	1 cut(s)	284
BseDI	CCNNGG	1 cut(s)	458
BseGI	GGATG	1 cut(s)	637
BseJI	GATNNNNATC	2 cut(s)	426, 492
BseLI	CCNNNNNNNGG	1 cut(s)	1143
BseMII	CTCAG	3 cut(s)	93, 108, 1077
BseNI	ACTGG	2 cut(s)	826, 916
BseSI	GKGCMC	1 cut(s)	742
BseXI	GCAGC	3 cut(s)	209, 212, 560
BsgI	GTGCAG	1 cut(s)	567
Bsh1236I	CGCG	1 cut(s)	189
BshFI	GGCC	3 cut(s)	282, 558, 682
BsiHKAI	GWGCWC	1 cut(s)	742
BsiHKCI	CYCGRG	1 cut(s)	1143
BsiSI	CCGG	3 cut(s)	31, 950, 1076
BslFI	GGGAC	2 cut(s)	114, 1083
BslI	CCNNNNNNNGG	1 cut(s)	1143
BsmAI	GTCTC	1 cut(s)	885
BsmFI	GGGAC	2 cut(s)	114, 1083
BsnI	GGCC	3 cut(s)	282, 558, 682
Bso31I	GGTCTC	1 cut(s)	885
BsoBI	CYCGRG	1 cut(s)	1143
Bsp1286I	GDGCHC	1 cut(s)	742
Bsp143I	GATC	9 cut(s)	74, 306, 405, 427, 475, 487, 499, 634, 925
Bsp1720I	GCTNAGC	1 cut(s)	672
Bsp68I	TCGCGA	1 cut(s)	189
BspACI	CCGC	1 cut(s)	1015
BspANI	GGCC	3 cut(s)	282, 558, 682
BspCNI	CTCAG	3 cut(s)	92, 109, 1078
BspFNI	CGCG	1 cut(s)	189
BspHI	TCATGA	1 cut(s)	322
BspLI	GGNNCC	2 cut(s)	557, 724
BspPI	GGATC	2 cut(s)	69, 920
BspTNI	GGTCTC	1 cut(s)	885
BsrI	ACTGG	2 cut(s)	826, 916
BssECI	CCNNGG	1 cut(s)	458
BssMI	GATC	9 cut(s)	74, 306, 405, 427, 475, 487, 499, 634, 925
Bst2UI	CCWGG	1 cut(s)	284
Bst4CI	ACNGT	6 cut(s)	152, 329, 416, 602, 737, 1116
Bst6I	CTCTTC	2 cut(s)	85, 155
BstC8I	GCNNGC	1 cut(s)	280
BstDEI	CTNAG	8 cut(s)	79, 117, 207, 439, 512, 672, 846, 1086
BstF5I	GGATG	1 cut(s)	637
BstFNI	CGCG	1 cut(s)	189
BstHHI	GCGC	1 cut(s)	157
BstKTI	GATC	9 cut(s)	77, 309, 408, 430, 478, 490, 502, 637, 928
BstMAI	GTCTC	1 cut(s)	885
BstMBI	GATC	9 cut(s)	74, 306, 405, 427, 475, 487, 499, 634, 925
BstMWI	GCNNNNNNNGC	4 cut(s)	15, 284, 545, 983
BstNI	CCWGG	1 cut(s)	284
BstSCI	CCNGG	3 cut(s)	282, 948, 1075
BstSLI	GKGCMC	1 cut(s)	742
BstUI	CGCG	1 cut(s)	189
BstV1I	GCAGC	3 cut(s)	209, 212, 560
BstV2I	GAAGAC	2 cut(s)	323, 986
BstXI	CCANNNNNNTGG	2 cut(s)	516, 718
Bsu36I	CCTNAGG	1 cut(s)	79
BsuI	GTATCC	3 cut(s)	514, 725, 1126
BsuRI	GGCC	3 cut(s)	282, 558, 682
BtsCI	GGATG	1 cut(s)	637
BtsI	GCAGTG	1 cut(s)	571
BtsIMutI	CAGTG	3 cut(s)	157, 571, 1033
BtuMI	TCGCGA	1 cut(s)	189
Cac8I	GCNNGC	1 cut(s)	280
CciI	TCATGA	1 cut(s)	322
CfoI	GCGC	1 cut(s)	157
Cfr13I	GGNCC	2 cut(s)	556, 680
Csp6I	GTAC	4 cut(s)	66, 417, 451, 1126
CviAII	CATG	6 cut(s)	295, 323, 367, 701, 968, 988
CviQI	GTAC	4 cut(s)	66, 417, 451, 1126
DdeI	CTNAG	8 cut(s)	79, 117, 207, 439, 512, 672, 846, 1086
DpnI	GATC	9 cut(s)	76, 308, 407, 429, 477, 489, 501, 636, 927
DpnII	GATC	9 cut(s)	74, 306, 405, 427, 475, 487, 499, 634, 925
DriI	GACNNNNNGTC	1 cut(s)	440
Eam1104I	CTCTTC	2 cut(s)	85, 155
Eam1105I	GACNNNNNGTC	1 cut(s)	440
EarI	CTCTTC	2 cut(s)	85, 155
EciI	GGCGGA	1 cut(s)	1004
Eco31I	GGTCTC	1 cut(s)	885
Eco81I	CCTNAGG	1 cut(s)	79
Eco88I	CYCGRG	1 cut(s)	1143
EcoO109I	RGGNCCY	1 cut(s)	556
EcoRI	GAATTC	1 cut(s)	347
EcoRII	CCWGG	1 cut(s)	282
FaeI	CATG	6 cut(s)	298, 326, 370, 704, 971, 991
FalI	AAGNNNNNCTT	6 cut(s)	255, 287, 465, 497, 495, 527
FaqI	GGGAC	2 cut(s)	114, 1083
FatI	CATG	6 cut(s)	294, 322, 366, 700, 967, 987
FbaI	TGATCA	2 cut(s)	499, 634
Fnu4HI	GCNGC	3 cut(s)	198, 201, 549
FokI	GGATG	1 cut(s)	644
Fsp4HI	GCNGC	3 cut(s)	198, 201, 549
FspBI	CTAG	3 cut(s)	869, 1176, 1180
FspI	TGCGCA	1 cut(s)	156
GlaI	GCGC	1 cut(s)	156
GluI	GCNGC	3 cut(s)	198, 201, 549
HaeIII	GGCC	3 cut(s)	282, 558, 682
HapII	CCGG	3 cut(s)	31, 950, 1076
HhaI	GCGC	1 cut(s)	157
Hin1II	CATG	6 cut(s)	298, 326, 370, 704, 971, 991
Hin6I	GCGC	1 cut(s)	155
HinP1I	GCGC	1 cut(s)	155
HincII	GTYRAC	1 cut(s)	768
HindII	GTYRAC	1 cut(s)	768
HindIII	AAGCTT	2 cut(s)	650, 674
HinfI	GANTC	5 cut(s)	435, 493, 769, 945, 1148
HpaII	CCGG	3 cut(s)	31, 950, 1076
HphI	GGTGA	2 cut(s)	391, 1104
Hpy166II	GTNNAC	3 cut(s)	259, 740, 768
Hpy188I	TCNGA	4 cut(s)	492, 658, 781, 1153
Hpy188III	TCNNGA	8 cut(s)	188, 323, 344, 497, 503, 892, 998, 1145
Hpy8I	GTNNAC	3 cut(s)	259, 740, 768
Hpy99I	CGWCG	1 cut(s)	1120
HpyAV	CCTTC	7 cut(s)	90, 121, 133, 233, 246, 823, 897
HpyCH4III	ACNGT	6 cut(s)	152, 329, 416, 602, 737, 1116
HpyCH4V	TGCA	8 cut(s)	197, 294, 548, 576, 740, 937, 964, 971
HpyF10VI	GCNNNNNNNGC	4 cut(s)	15, 284, 545, 983
HpyF3I	CTNAG	8 cut(s)	79, 117, 207, 439, 512, 672, 846, 1086
Hsp92II	CATG	6 cut(s)	298, 326, 370, 704, 971, 991
HspAI	GCGC	1 cut(s)	155
Ksp22I	TGATCA	2 cut(s)	499, 634
Kzo9I	GATC	9 cut(s)	74, 306, 405, 427, 475, 487, 499, 634, 925
Lsp1109I	GCAGC	3 cut(s)	209, 212, 560
LweI	GCATC	2 cut(s)	103, 973
MaeI	CTAG	3 cut(s)	869, 1176, 1180
MaeIII	GTNAC	2 cut(s)	397, 602
MalI	GATC	9 cut(s)	76, 308, 407, 429, 477, 489, 501, 636, 927
MboI	GATC	9 cut(s)	74, 306, 405, 427, 475, 487, 499, 634, 925
MboII	GAAGA	8 cut(s)	102, 172, 323, 485, 560, 954, 986, 1098
MhlI	GDGCHC	1 cut(s)	742
MluCI	AATT	4 cut(s)	54, 226, 347, 528
MlyI	GAGTC	2 cut(s)	429, 763
MmeI	TCCRAC	2 cut(s)	609, 789
MnlI	CCTC	6 cut(s)	86, 88, 352, 453, 1029, 1081
MroXI	GAANNNNTTC	2 cut(s)	567, 1165
MseI	TTAA	4 cut(s)	318, 371, 531, 774
MslI	CAYNNNNRTG	1 cut(s)	108
MspI	CCGG	3 cut(s)	31, 950, 1076
MspR9I	CCNGG	3 cut(s)	284, 950, 1077
MvaI	CCWGG	1 cut(s)	284
MvnI	CGCG	1 cut(s)	189
MwoI	GCNNNNNNNGC	4 cut(s)	15, 284, 545, 983
NciI	CCSGG	2 cut(s)	950, 1077
NdeII	GATC	9 cut(s)	74, 306, 405, 427, 475, 487, 499, 634, 925
NlaIII	CATG	6 cut(s)	298, 326, 370, 704, 971, 991
NlaIV	GGNNCC	2 cut(s)	557, 724
NmeAIII	GCCGAG	1 cut(s)	483
NmuCI	GTSAC	2 cut(s)	397, 602
NruI	TCGCGA	1 cut(s)	189
NsbI	TGCGCA	1 cut(s)	156
PagI	TCATGA	1 cut(s)	322
PdmI	GAANNNNTTC	2 cut(s)	567, 1165
PfeI	GAWTC	3 cut(s)	493, 945, 1148
PkrI	GCNGC	3 cut(s)	199, 202, 550
PleI	GAGTC	2 cut(s)	429, 763
PpsI	GAGTC	2 cut(s)	429, 763
Psp6I	CCWGG	1 cut(s)	282
PspGI	CCWGG	1 cut(s)	282
PspN4I	GGNNCC	2 cut(s)	557, 724
PspPI	GGNCC	2 cut(s)	556, 680
PsrI	GAACNNNNNNTAC	2 cut(s)	1150, 1182
RruI	TCGCGA	1 cut(s)	189
RsaI	GTAC	4 cut(s)	67, 418, 452, 1127
RsaNI	GTAC	4 cut(s)	66, 417, 451, 1126
RseI	CAYNNNNRTG	1 cut(s)	108
SaqAI	TTAA	4 cut(s)	318, 371, 531, 774
SatI	GCNGC	3 cut(s)	198, 201, 549
Sau3AI	GATC	9 cut(s)	74, 306, 405, 427, 475, 487, 499, 634, 925
Sau96I	GGNCC	2 cut(s)	556, 680
ScaI	AGTACT	1 cut(s)	452
SchI	GAGTC	2 cut(s)	429, 763
ScrFI	CCNGG	3 cut(s)	284, 950, 1077
SduI	GDGCHC	1 cut(s)	742
SfaNI	GCATC	2 cut(s)	103, 973
SmiMI	CAYNNNNRTG	1 cut(s)	108
Sse9I	AATT	4 cut(s)	54, 226, 347, 528
SsiI	CCGC	1 cut(s)	1015
SspMI	CTAG	3 cut(s)	869, 1176, 1180
StyD4I	CCNGG	3 cut(s)	282, 948, 1075
TaaI	ACNGT	6 cut(s)	152, 329, 416, 602, 737, 1116
TaqI	TCGA	4 cut(s)	51, 73, 526, 924
TaqII	GACCGA	1 cut(s)	915
TasI	AATT	4 cut(s)	54, 226, 347, 528
TatI	WGTACW	3 cut(s)	416, 450, 1125
TfiI	GAWTC	3 cut(s)	493, 945, 1148
Tru1I	TTAA	4 cut(s)	318, 371, 531, 774
Tru9I	TTAA	4 cut(s)	318, 371, 531, 774
TscAI	CASTG	3 cut(s)	157, 578, 1033
TseFI	GTSAC	2 cut(s)	397, 602
TseI	GCWGC	3 cut(s)	197, 200, 548
Tsp45I	GTSAC	2 cut(s)	397, 602
TspDTI	ATGAA	3 cut(s)	340, 1082, 1098
TspRI	CASTG	3 cut(s)	157, 578, 1033
VneI	GTGCAC	1 cut(s)	738
XapI	RAATTY	2 cut(s)	226, 347
XmnI	GAANNNNTTC	2 cut(s)	567, 1165
XspI	CTAG	3 cut(s)	869, 1176, 1180
ZrmI	AGTACT	1 cut(s)	452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.