Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0009748

Physical Location & Seq

Genomic Coordinates Reverse (-)

750519 .. 752256

Gene Structure 1738 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g00800.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGCAGGTTGTTGCAATTAAACAACTTAATCATGACGGTGTTCAAGGGTTCCAAGAATTCATCGTCGAGGTTCTCATGTTAAGCCTGCTACACCATACAAACCTGGTCACCTTGATTGGCTACTGTACTGACGGAGATCAGAGACTCTTAGTCTATGAGTACATGCCAAGGGGTAGCTTGGAAGATCATCTTTTTGATCTTAGCCCTGGTCAAGAGCCACTGAGTTGGGACACTCGAATTAAGATAGCTGTTGGTGCGGCACGGGGCCTTGAATACCTCCACTGCAAAGCTAACCCACCAGTTATCTACCGTGACTTGAAATCAGCAAATATACTGCTGGATGATGAATTCAATCCAAAGCTTTCAGATTTTGGGCTTGCTAAACTTGCACCTGTGGGTGACAAAACTCATGTCTCAACAAGAGTGATGGGAACATACGGGTACTGTGCACCAGAATATGCCATGAGCGGCAAGTTGACTCTGAAATCTGATATTTATAGCCTTGGTGTGGTTATGTTGGAGCTGATTACTGGGAAGAAGGCAATTGACTGCTCTAAGAGGCCAGGAGAACAGAACCTAGTATCTTGGTCTCGCCCATTTTTGAAGGATCGGAGGAAGTTTGTCCAATTAGTTGATCCTCTGTTGCAAGGACGTTTCCCAGTTCGTTGTTTGCATCATGCAATTGCCATTACTGCCATGTGTCTTCAAGAGCAACCAACTTTCCGTCCTCTTGTTACTGATATTGTTGTAGCACTTGAGTACTTGGCGTCCCAGAGCCACAAACCTGACCCTCGTAAAGCTGGGGTCCATAGTCCCTTATCGGCATCACCTTCACAGCAGAACAGGGATATTGTCTCGCAGGATTCTTATTGCAGAATGAGTTCAACTTCTACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002221 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0002757 GO:0002758 GO:0002764 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009941 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0031967 GO:0031975 GO:0036211 GO:0038023 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

299

Amino Acids

33.27

Weight (kDa)

7.64

Isoelectric Point (pI)

40.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009748)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20650 AT1G76370
fragaria_vesca	FvH4_5g25320 FvH4_5g25320 FvH4_5g25320 FvH4_5g25320 FvH4_5g25320
malus_domestica	MD06G1009700.v1.1 MD16G1284800.v1.1
prunus_persica	Prupe.5G010800_v2.0.a1
pyrus_communis	pycom06g00800
rosa_chinensis	RchiOBHm_Chr7g0215541
rosa_laevigata	RLG00000002649
rosa_multiflora	Rmu_sc0000898.1_g000097 Rmu_sc0002094.1_g000022
rosa_roxburghii	Rroxscaffold_3G00244120
rosa_rugosa	Rorug04G0205900
rosa_samantha	Rh4CG281000 Rh4DG265000 Rh7BG283000
rosa_wichuraiana	Rw7G024820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	468
AciI	CCGC	2 cut(s)	257, 468
AclWI	GGATC	2 cut(s)	615, 629
AcsI	RAATTY	2 cut(s)	56, 347
AcyI	GRCGYC	1 cut(s)	767
AfaI	GTAC	4 cut(s)	127, 161, 443, 761
AfiI	CCNNNNNNNGG	1 cut(s)	508
AgsI	TTSAA	7 cut(s)	44, 272, 319, 352, 604, 707, 885
AhdI	GACNNNNNGTC	1 cut(s)	149
AjnI	CCWGG	3 cut(s)	102, 205, 562
AluBI	AGCT	6 cut(s)	177, 248, 290, 361, 523, 800
AluI	AGCT	6 cut(s)	177, 248, 290, 361, 523, 800
Alw21I	GWGCWC	1 cut(s)	451
Alw26I	GTCTC	4 cut(s)	136, 418, 594, 859
Alw44I	GTGCAC	1 cut(s)	447
AlwI	GGATC	2 cut(s)	615, 629
AoxI	GGCC	2 cut(s)	265, 560
ApaLI	GTGCAC	1 cut(s)	447
ApoI	RAATTY	2 cut(s)	56, 347
ArsI	GACNNNNNNTTYG	2 cut(s)	396, 428
Asp700I	GAANNNNTTC	1 cut(s)	880
AspS9I	GGNCC	2 cut(s)	265, 805
AsuHPI	GGTGA	3 cut(s)	100, 410, 819
AvaII	GGWCC	1 cut(s)	805
BaeGI	GKGCMC	1 cut(s)	451
BbsI	GAAGAC	1 cut(s)	695
Bbv12I	GWGCWC	1 cut(s)	451
BccI	CCATC	1 cut(s)	421
BciT130I	CCWGG	3 cut(s)	104, 207, 564
BcoDI	GTCTC	4 cut(s)	136, 418, 594, 859
BfaI	CTAG	1 cut(s)	578
BisI	GCNGC	2 cut(s)	258, 469
BlsI	GCNGC	2 cut(s)	259, 470
BmcAI	AGTACT	1 cut(s)	761
Bme1390I	CCNGG	3 cut(s)	104, 207, 564
Bme18I	GGWCC	1 cut(s)	805
BmeRI	GACNNNNNGTC	1 cut(s)	149
BmgT120I	GGNCC	2 cut(s)	265, 805
BmiI	GGNNCC	3 cut(s)	50, 266, 806
BmrFI	CCNGG	3 cut(s)	104, 207, 564
BmrI	ACTGGG	2 cut(s)	540, 653
BmsI	GCATC	2 cut(s)	682, 833
BmuI	ACTGGG	2 cut(s)	540, 653
BpiI	GAAGAC	1 cut(s)	695
BpuEI	CTTGAG	1 cut(s)	776
BsaHI	GRCGYC	1 cut(s)	767
BsaI	GGTCTC	1 cut(s)	594
BsaJI	CCNNGG	3 cut(s)	167, 205, 502
Bsc4I	CCNNNNNNNGG	1 cut(s)	508
Bse1I	ACTGG	3 cut(s)	299, 535, 659
BseBI	CCWGG	3 cut(s)	104, 207, 564
BseDI	CCNNGG	3 cut(s)	167, 205, 502
BseGI	GGATG	1 cut(s)	346
BseLI	CCNNNNNNNGG	1 cut(s)	508
BseMII	CTCAG	1 cut(s)	212
BseNI	ACTGG	3 cut(s)	299, 535, 659
BseSI	GKGCMC	1 cut(s)	451
BseYI	CCCAGC	1 cut(s)	800
BshFI	GGCC	2 cut(s)	267, 562
BsiHKAI	GWGCWC	1 cut(s)	451
BslFI	GGGAC	3 cut(s)	242, 754, 798
BslI	CCNNNNNNNGG	1 cut(s)	508
BsmAI	GTCTC	4 cut(s)	136, 418, 594, 859
BsmFI	GGGAC	3 cut(s)	242, 754, 798
BsnI	GGCC	2 cut(s)	267, 562
Bso31I	GGTCTC	1 cut(s)	594
Bsp1286I	GDGCHC	1 cut(s)	451
Bsp143I	GATC	5 cut(s)	136, 184, 196, 607, 634
BspACI	CCGC	2 cut(s)	257, 468
BspANI	GGCC	2 cut(s)	267, 562
BspCNI	CTCAG	1 cut(s)	213
BspHI	TCATGA	1 cut(s)	31
BspLI	GGNNCC	3 cut(s)	50, 266, 806
BspPI	GGATC	2 cut(s)	615, 629
BspTNI	GGTCTC	1 cut(s)	594
BsrBI	CCGCTC	1 cut(s)	468
BsrI	ACTGG	3 cut(s)	299, 535, 659
BssECI	CCNNGG	3 cut(s)	167, 205, 502
BssMI	GATC	5 cut(s)	136, 184, 196, 607, 634
BssNI	GRCGYC	1 cut(s)	767
BssT1I	CCWWGG	2 cut(s)	167, 502
Bst2UI	CCWGG	3 cut(s)	104, 207, 564
Bst4CI	ACNGT	4 cut(s)	38, 125, 311, 446
BstACI	GRCGYC	1 cut(s)	767
BstC8I	GCNNGC	2 cut(s)	86, 378
BstDEI	CTNAG	5 cut(s)	148, 200, 221, 555, 894
BstEII	GGTNACC	1 cut(s)	106
BstF5I	GGATG	1 cut(s)	346
BstKTI	GATC	5 cut(s)	139, 187, 199, 610, 637
BstMAI	GTCTC	4 cut(s)	136, 418, 594, 859
BstMBI	GATC	5 cut(s)	136, 184, 196, 607, 634
BstMWI	GCNNNNNNNGC	3 cut(s)	254, 386, 692
BstNI	CCWGG	3 cut(s)	104, 207, 564
BstNSI	RCATGY	1 cut(s)	166
BstPI	GGTNACC	1 cut(s)	106
BstSCI	CCNGG	3 cut(s)	102, 205, 562
BstSLI	GKGCMC	1 cut(s)	451
BstV2I	GAAGAC	1 cut(s)	695
BstXI	CCANNNNNNTGG	1 cut(s)	225
BsuRI	GGCC	2 cut(s)	267, 562
BtsCI	GGATG	1 cut(s)	346
BtsI	GCAGTG	1 cut(s)	280
BtsIMutI	CAGTG	2 cut(s)	218, 280
Cac8I	GCNNGC	2 cut(s)	86, 378
CciI	TCATGA	1 cut(s)	31
Cfr13I	GGNCC	2 cut(s)	265, 805
CseI	GACGC	1 cut(s)	756
CsiI	ACCWGGT	1 cut(s)	102
Csp6I	GTAC	4 cut(s)	126, 160, 442, 760
CviAII	CATG	7 cut(s)	32, 76, 163, 410, 463, 677, 697
CviQI	GTAC	4 cut(s)	126, 160, 442, 760
DdeI	CTNAG	5 cut(s)	148, 200, 221, 555, 894
DpnI	GATC	5 cut(s)	138, 186, 198, 609, 636
DpnII	GATC	5 cut(s)	136, 184, 196, 607, 634
DriI	GACNNNNNGTC	1 cut(s)	149
Eam1105I	GACNNNNNGTC	1 cut(s)	149
Eco130I	CCWWGG	2 cut(s)	167, 502
Eco31I	GGTCTC	1 cut(s)	594
Eco47I	GGWCC	1 cut(s)	805
Eco91I	GGTNACC	1 cut(s)	106
EcoO109I	RGGNCCY	1 cut(s)	265
EcoO65I	GGTNACC	1 cut(s)	106
EcoRI	GAATTC	2 cut(s)	56, 347
EcoRII	CCWGG	3 cut(s)	102, 205, 562
EcoT14I	CCWWGG	2 cut(s)	167, 502
ErhI	CCWWGG	2 cut(s)	167, 502
FaeI	CATG	7 cut(s)	35, 79, 166, 413, 466, 680, 700
FalI	AAGNNNNNCTT	2 cut(s)	174, 206
FaqI	GGGAC	3 cut(s)	242, 754, 798
FatI	CATG	7 cut(s)	31, 75, 162, 409, 462, 676, 696
Fnu4HI	GCNGC	2 cut(s)	258, 469
FokI	GGATG	1 cut(s)	353
Fsp4HI	GCNGC	2 cut(s)	258, 469
FspBI	CTAG	1 cut(s)	578
GluI	GCNGC	2 cut(s)	258, 469
GsaI	CCCAGC	1 cut(s)	804
HaeIII	GGCC	2 cut(s)	267, 562
HgaI	GACGC	1 cut(s)	756
Hin1I	GRCGYC	1 cut(s)	767
Hin1II	CATG	7 cut(s)	35, 79, 166, 413, 466, 680, 700
HincII	GTYRAC	1 cut(s)	477
HindII	GTYRAC	1 cut(s)	477
HindIII	AAGCTT	1 cut(s)	359
HinfI	GANTC	3 cut(s)	144, 478, 863
HphI	GGTGA	3 cut(s)	100, 410, 819
Hpy166II	GTNNAC	2 cut(s)	449, 477
Hpy188I	TCNGA	5 cut(s)	141, 367, 483, 490, 612
Hpy188III	TCNNGA	3 cut(s)	32, 212, 707
Hpy8I	GTNNAC	2 cut(s)	449, 477
Hpy99I	CGWCG	1 cut(s)	68
HpyAV	CCTTC	3 cut(s)	532, 598, 840
HpyCH4III	ACNGT	4 cut(s)	38, 125, 311, 446
HpyCH4IV	ACGT	1 cut(s)	652
HpyCH4V	TGCA	9 cut(s)	4, 14, 285, 389, 449, 646, 673, 680, 873
HpyF10VI	GCNNNNNNNGC	3 cut(s)	254, 386, 692
HpyF3I	CTNAG	5 cut(s)	148, 200, 221, 555, 894
HpySE526I	ACGT	1 cut(s)	652
Hsp92I	GRCGYC	1 cut(s)	767
Hsp92II	CATG	7 cut(s)	35, 79, 166, 413, 466, 680, 700
Kzo9I	GATC	5 cut(s)	136, 184, 196, 607, 634
LmnI	GCTCC	1 cut(s)	520
LweI	GCATC	2 cut(s)	682, 833
MabI	ACCWGGT	1 cut(s)	102
MaeI	CTAG	1 cut(s)	578
MaeII	ACGT	1 cut(s)	652
MaeIII	GTNAC	4 cut(s)	106, 311, 398, 733
MalI	GATC	5 cut(s)	138, 186, 198, 609, 636
MbiI	CCGCTC	1 cut(s)	468
MboI	GATC	5 cut(s)	136, 184, 196, 607, 634
MboII	GAAGA	3 cut(s)	194, 547, 695
MfeI	CAATTG	2 cut(s)	543, 681
MhlI	GDGCHC	1 cut(s)	451
MluCI	AATT	7 cut(s)	15, 56, 237, 347, 543, 626, 681
MlyI	GAGTC	2 cut(s)	138, 472
MmeI	TCCRAC	1 cut(s)	498
MnlI	CCTC	7 cut(s)	61, 287, 552, 606, 648, 738, 801
MroXI	GAANNNNTTC	1 cut(s)	880
MseI	TTAA	4 cut(s)	18, 27, 80, 240
MslI	CAYNNNNRTG	1 cut(s)	36
MspR9I	CCNGG	3 cut(s)	104, 207, 564
MunI	CAATTG	2 cut(s)	543, 681
MvaI	CCWGG	3 cut(s)	104, 207, 564
MwoI	GCNNNNNNNGC	3 cut(s)	254, 386, 692
NdeII	GATC	5 cut(s)	136, 184, 196, 607, 634
NlaIII	CATG	7 cut(s)	35, 79, 166, 413, 466, 680, 700
NlaIV	GGNNCC	3 cut(s)	50, 266, 806
NmuCI	GTSAC	3 cut(s)	106, 311, 398
NspI	RCATGY	1 cut(s)	166
PagI	TCATGA	1 cut(s)	31
PdmI	GAANNNNTTC	1 cut(s)	880
PfeI	GAWTC	1 cut(s)	863
PkrI	GCNGC	2 cut(s)	259, 470
PleI	GAGTC	2 cut(s)	138, 472
PpsI	GAGTC	2 cut(s)	138, 472
Psp6I	CCWGG	3 cut(s)	102, 205, 562
PspEI	GGTNACC	1 cut(s)	106
PspFI	CCCAGC	1 cut(s)	800
PspGI	CCWGG	3 cut(s)	102, 205, 562
PspN4I	GGNNCC	3 cut(s)	50, 266, 806
PspPI	GGNCC	2 cut(s)	265, 805
RsaI	GTAC	4 cut(s)	127, 161, 443, 761
RsaNI	GTAC	4 cut(s)	126, 160, 442, 760
RseI	CAYNNNNRTG	1 cut(s)	36
SaqAI	TTAA	4 cut(s)	18, 27, 80, 240
SatI	GCNGC	2 cut(s)	258, 469
Sau3AI	GATC	5 cut(s)	136, 184, 196, 607, 634
Sau96I	GGNCC	2 cut(s)	265, 805
ScaI	AGTACT	1 cut(s)	761
SchI	GAGTC	2 cut(s)	138, 472
ScrFI	CCNGG	3 cut(s)	104, 207, 564
SduI	GDGCHC	1 cut(s)	451
SexAI	ACCWGGT	1 cut(s)	102
SfaNI	GCATC	2 cut(s)	682, 833
SinI	GGWCC	1 cut(s)	805
SmiMI	CAYNNNNRTG	1 cut(s)	36
SmlI	CTYRAG	1 cut(s)	755
SmoI	CTYRAG	1 cut(s)	755
Sse9I	AATT	7 cut(s)	15, 56, 237, 347, 543, 626, 681
SsiI	CCGC	2 cut(s)	257, 468
SspMI	CTAG	1 cut(s)	578
StyD4I	CCNGG	3 cut(s)	102, 205, 562
StyI	CCWWGG	2 cut(s)	167, 502
TaaI	ACNGT	4 cut(s)	38, 125, 311, 446
TaiI	ACGT	1 cut(s)	655
TaqI	TCGA	2 cut(s)	66, 235
TasI	AATT	7 cut(s)	15, 56, 237, 347, 543, 626, 681
TatI	WGTACW	3 cut(s)	125, 159, 759
TauI	GCSGC	2 cut(s)	260, 471
TfiI	GAWTC	1 cut(s)	863
Tru1I	TTAA	4 cut(s)	18, 27, 80, 240
Tru9I	TTAA	4 cut(s)	18, 27, 80, 240
TscAI	CASTG	2 cut(s)	225, 287
TseFI	GTSAC	3 cut(s)	106, 311, 398
Tsp45I	GTSAC	3 cut(s)	106, 311, 398
TspDTI	ATGAA	2 cut(s)	49, 360
TspGWI	ACGGA	2 cut(s)	147, 713
TspRI	CASTG	2 cut(s)	225, 287
VneI	GTGCAC	1 cut(s)	447
VpaK11BI	GGWCC	1 cut(s)	805
XapI	RAATTY	2 cut(s)	56, 347
XceI	RCATGY	1 cut(s)	166
XmnI	GAANNNNTTC	1 cut(s)	880
XspI	CTAG	1 cut(s)	578
ZrmI	AGTACT	1 cut(s)	761

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.