Rh4CG281000
ERF Family

belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
Physical Location & Seq
Forward (+)
53820184 .. 53821651
1468 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG281000.1

Sequence Viewer

Length: 567 bp
ATGAATTTCAACAGTTTGATGAAATGCTTTCGCTCTAGCGAGGAGCAGGAGATTATTCGCGAAGAAAAATGGATCATGGAAGTGCCCAGGGTATTCACATTCAGAGATCTGGCAGTTGCAACGCAGAACTTCAGCCAACAATCATTGATTGGGGAAGGAGGAACTGCAAAAGTATACAGAGGGTATCTAGAGACTGGTCAGATTGTTGCGGTCAAGCGTTTGAATCATGCTATAGCACAACGGGGGACAAAAGAATTTGATGCCGAGGCTAATTTACTCAGTACATTACGACATCCAAACATAGTTACTTTGATCGGGCATTGTGTTGAGGGGGAGGAGATGCTTCTCGTATACGAGTTCATGGAGCTAGGATCGTTGGTGGATCACCTACATGATTTTCGACCGAGTACGACAGTATTAAGTTGGAGGACGAGGACTGATATATACAGTTTTGGCATAATTCTTTGGGAGCTGATTGCCGGAAGAAAAGCAATTGAACCCGATCAATCATCTGGAAAGCAAAATATAGTGCATTGGTCTATGTATGCAGGCACAACCATATTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

188

Amino Acids

21.48

Weight (kDa)

5.87

Isoelectric Point (pI)

40.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 45 - 131 1e-15 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 47 - 135 7.3e-18 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 565
AccI GTMKAC 2 cut(s) 174, 351
AccII CGCG 1 cut(s) 60
AciI CCGC 1 cut(s) 209
AclWI GGATC 3 cut(s) 80, 379, 390
AcsI RAATTY 2 cut(s) 4, 254
AcuI CTGAAG 1 cut(s) 115
AfaI GTAC 2 cut(s) 283, 409
AgsI TTSAA 3 cut(s) 10, 223, 497
AjnI CCWGG 1 cut(s) 86
AluBI AGCT 2 cut(s) 367, 472
AluI AGCT 2 cut(s) 367, 472
Alw26I GTCTC 1 cut(s) 185
AlwI GGATC 3 cut(s) 80, 379, 390
ApoI RAATTY 2 cut(s) 4, 254
AsuHPI GGTGA 1 cut(s) 377
BaeGI GKGCMC 1 cut(s) 87
BciT130I CCWGG 1 cut(s) 88
BcoDI GTCTC 1 cut(s) 185
BfaI CTAG 3 cut(s) 36, 188, 368
BfmI CTRYAG 1 cut(s) 231
BglII AGATCT 1 cut(s) 106
Bme1390I CCNGG 1 cut(s) 88
BmrFI CCNGG 1 cut(s) 88
BmsI GCATC 2 cut(s) 250, 330
BsaJI CCNNGG 3 cut(s) 86, 87, 264
Bse1I ACTGG 1 cut(s) 199
BseBI CCWGG 1 cut(s) 88
BseDI CCNNGG 3 cut(s) 86, 87, 264
BseGI GGATG 1 cut(s) 292
BseMII CTCAG 1 cut(s) 292
BseNI ACTGG 1 cut(s) 199
BseRI GAGGAG 2 cut(s) 56, 350
BseSI GKGCMC 1 cut(s) 87
Bsh1236I CGCG 1 cut(s) 60
Bsh1285I CGRYCG 1 cut(s) 404
BsiEI CGRYCG 1 cut(s) 404
BsiSI CCGG 1 cut(s) 480
BslFI GGGAC 1 cut(s) 259
BsmAI GTCTC 1 cut(s) 185
BsmFI GGGAC 1 cut(s) 259
Bsp1286I GDGCHC 1 cut(s) 87
Bsp143I GATC 6 cut(s) 72, 106, 312, 371, 382, 502
Bsp68I TCGCGA 1 cut(s) 60
BspACI CCGC 1 cut(s) 209
BspCNI CTCAG 1 cut(s) 291
BspFNI CGCG 1 cut(s) 60
BspPI GGATC 3 cut(s) 80, 379, 390
BsrI ACTGG 1 cut(s) 199
BssECI CCNNGG 3 cut(s) 86, 87, 264
BssMI GATC 6 cut(s) 72, 106, 312, 371, 382, 502
BssNAI GTATAC 2 cut(s) 175, 352
Bst1107I GTATAC 2 cut(s) 175, 352
Bst2UI CCWGG 1 cut(s) 88
Bst4CI ACNGT 3 cut(s) 14, 415, 449
BstC8I GCNNGC 1 cut(s) 550
BstDEI CTNAG 1 cut(s) 278
BstF5I GGATG 1 cut(s) 292
BstFNI CGCG 1 cut(s) 60
BstKTI GATC 6 cut(s) 75, 109, 315, 374, 385, 505
BstMAI GTCTC 1 cut(s) 185
BstMBI GATC 6 cut(s) 72, 106, 312, 371, 382, 502
BstMCI CGRYCG 1 cut(s) 404
BstNI CCWGG 1 cut(s) 88
BstSCI CCNGG 1 cut(s) 86
BstSFI CTRYAG 1 cut(s) 231
BstSLI GKGCMC 1 cut(s) 87
BstUI CGCG 1 cut(s) 60
BstX2I RGATCY 1 cut(s) 106
BstYI RGATCY 1 cut(s) 106
BstZ17I GTATAC 2 cut(s) 175, 352
BtsCI GGATG 1 cut(s) 292
BtuMI TCGCGA 1 cut(s) 60
Cac8I GCNNGC 1 cut(s) 550
Csp6I GTAC 2 cut(s) 282, 408
CviAII CATG 4 cut(s) 76, 227, 361, 392
CviJI RGCY 4 cut(s) 135, 269, 367, 472
CviKI_1 RGCY 4 cut(s) 135, 269, 367, 472
CviQI GTAC 2 cut(s) 282, 408
DdeI CTNAG 1 cut(s) 278
DpnI GATC 6 cut(s) 74, 108, 314, 373, 384, 504
DpnII GATC 6 cut(s) 72, 106, 312, 371, 382, 502
Eco57I CTGAAG 1 cut(s) 115
EcoRII CCWGG 1 cut(s) 86
FaeI CATG 4 cut(s) 79, 230, 364, 395
FaqI GGGAC 1 cut(s) 259
FatI CATG 4 cut(s) 75, 226, 360, 391
FblI GTMKAC 2 cut(s) 174, 351
FokI GGATG 1 cut(s) 279
FspBI CTAG 3 cut(s) 36, 188, 368
HapII CCGG 1 cut(s) 480
Hin1II CATG 4 cut(s) 79, 230, 364, 395
HinfI GANTC 1 cut(s) 223
HpaII CCGG 1 cut(s) 480
HphI GGTGA 1 cut(s) 377
Hpy166II GTNNAC 2 cut(s) 175, 352
Hpy188I TCNGA 2 cut(s) 104, 201
Hpy188III TCNNGA 3 cut(s) 59, 188, 513
Hpy8I GTNNAC 2 cut(s) 175, 352
HpyAV CCTTC 1 cut(s) 149
HpyCH4III ACNGT 3 cut(s) 14, 415, 449
HpyCH4V TGCA 4 cut(s) 119, 167, 532, 548
HpyF3I CTNAG 1 cut(s) 278
Hsp92II CATG 4 cut(s) 79, 230, 364, 395
Kzo9I GATC 6 cut(s) 72, 106, 312, 371, 382, 502
LmnI GCTCC 3 cut(s) 43, 364, 469
LpnPI CCDG 8 cut(s) 32, 73, 95, 100, 180, 493, 498, 534
LweI GCATC 2 cut(s) 250, 330
MaeI CTAG 3 cut(s) 36, 188, 368
MaeIII GTNAC 1 cut(s) 304
MalI GATC 6 cut(s) 74, 108, 314, 373, 384, 504
MboI GATC 6 cut(s) 72, 106, 312, 371, 382, 502
MboII GAAGA 2 cut(s) 74, 495
MfeI CAATTG 1 cut(s) 492
MflI RGATCY 1 cut(s) 106
MhlI GDGCHC 1 cut(s) 87
MluCI AATT 5 cut(s) 4, 254, 271, 459, 492
MmeI TCCRAC 1 cut(s) 404
MnlI CCTC 8 cut(s) 34, 152, 173, 259, 322, 328, 420, 426
MseI TTAA 1 cut(s) 419
MslI CAYNNNNRTG 2 cut(s) 80, 390
MspI CCGG 1 cut(s) 480
MspR9I CCNGG 1 cut(s) 88
MunI CAATTG 1 cut(s) 492
MvaI CCWGG 1 cut(s) 88
MvnI CGCG 1 cut(s) 60
NdeII GATC 6 cut(s) 72, 106, 312, 371, 382, 502
NlaIII CATG 4 cut(s) 79, 230, 364, 395
NmeAIII GCCGAG 1 cut(s) 289
NruI TCGCGA 1 cut(s) 60
PasI CCCWGGG 1 cut(s) 87
PfeI GAWTC 1 cut(s) 223
PsiI TTATAA 1 cut(s) 565
Psp6I CCWGG 1 cut(s) 86
PspGI CCWGG 1 cut(s) 86
PsuI RGATCY 1 cut(s) 106
RruI TCGCGA 1 cut(s) 60
RsaI GTAC 2 cut(s) 283, 409
RsaNI GTAC 2 cut(s) 282, 408
RseI CAYNNNNRTG 2 cut(s) 80, 390
SaqAI TTAA 1 cut(s) 419
Sau3AI GATC 6 cut(s) 72, 106, 312, 371, 382, 502
ScrFI CCNGG 1 cut(s) 88
SduI GDGCHC 1 cut(s) 87
SetI ASST 3 cut(s) 369, 390, 474
SfaNI GCATC 2 cut(s) 250, 330
SfcI CTRYAG 1 cut(s) 231
SmiMI CAYNNNNRTG 2 cut(s) 80, 390
Sse9I AATT 5 cut(s) 4, 254, 271, 459, 492
SsiI CCGC 1 cut(s) 209
SspMI CTAG 3 cut(s) 36, 188, 368
StyD4I CCNGG 1 cut(s) 86
TaaI ACNGT 3 cut(s) 14, 415, 449
TaqI TCGA 1 cut(s) 400
TaqII GACCGA 1 cut(s) 418
TasI AATT 5 cut(s) 4, 254, 271, 459, 492
TatI WGTACW 1 cut(s) 281
TfiI GAWTC 1 cut(s) 223
Tru1I TTAA 1 cut(s) 419
Tru9I TTAA 1 cut(s) 419
TspDTI ATGAA 3 cut(s) 17, 35, 349
XapI RAATTY 2 cut(s) 4, 254
XbaI TCTAGA 1 cut(s) 187
XmiI GTMKAC 2 cut(s) 174, 351
XspI CTAG 3 cut(s) 36, 188, 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.