Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0009748

Physical Location & Seq

Genomic Coordinates Forward (+)

48375585 .. 48400421

Gene Structure 24837 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG265000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGAATTTCAACAGTTTGATGAAATGCTTTCGCTCTAGCGAGGAGCAGAAGATTATTCTTGAAGAAAAATGTACAGGGATCATGGAAGTGCCCAGGGTATTCACATTCAGAGATCTGGCAGTTGCAACGCAGAACTTCAGCCAACAATCATTGATTGGGGAAGGAGGAACTGCAAAAGTATACAAAGGGTATCTAGAGACTGGTCAGATTGTTGCGGTCAAGCGTTTGAATCAAGCTATAGCACAACGGGGAACAAAAGAATTTGATGCCGAGGCTAATTTACTCAGTACATTACGACATCCAAACATAGTTACTTTGATCGGGCATTGTGTTGAGGGGGAGGAGATGCTTCTCGTATACGAGTTCATGGAGCTAGGATCGTTGGTGGATCACCTACATGATTTTCGACCGATTGGTGACCAAGGGAGTGCCATTGACAATTGGTTGGGGTGCTGGTGGTGGCGGGAGGTGTTGCATGTTGTTAGGGAACAACGGTCCATTCAAATATACCAAGTGGGATACCTGCCCATCAGTGACAACTATGGAGGAGTCCGCGGGAGGGATGGCTGTAGCGGGGTGGCAGTGGCTCCCCCTGAGGTGACGAGTGCCGCTGATGTGATGGCTGGGGTGCCAACGCCAGATAAGGTGGGGAAAGGGGTGTTTAGTGTTGTTCTTTCGAAGGTTGAGTTCTGCTCAATTCACCACTGCAGAGTGGCTTGCAACAACATGCTCTCGGCTTCCAGTTCACCGAGGCTGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002221 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0002757 GO:0002758 GO:0002764 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009966 GO:0009967 GO:0009987 GO:0010646 GO:0010647 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023051 GO:0023052 GO:0023056 GO:0031347 GO:0031349 GO:0036211 GO:0038023 GO:0040007 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1900457 GO:1900459 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

253

Amino Acids

27.99

Weight (kDa)

5.99

Isoelectric Point (pI)

30.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	47 - 134	5.7e-16	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	49 - 134	9.4e-18	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009748)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20650 AT1G76370
fragaria_vesca	FvH4_5g25320 FvH4_5g25320 FvH4_5g25320 FvH4_5g25320 FvH4_5g25320
malus_domestica	MD06G1009700.v1.1 MD16G1284800.v1.1
prunus_persica	Prupe.5G010800_v2.0.a1
pyrus_communis	pycom06g00800
rosa_chinensis	RchiOBHm_Chr7g0215541
rosa_laevigata	RLG00000002649
rosa_multiflora	Rmu_sc0000898.1_g000097 Rmu_sc0002094.1_g000022
rosa_roxburghii	Rroxscaffold_3G00244120
rosa_rugosa	Rorug04G0205900
rosa_samantha	Rh4CG281000 Rh4DG265000 Rh7BG283000
rosa_wichuraiana	Rw7G024820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	531
AccB1I	GGYRCC	1 cut(s)	628
AccI	GTMKAC	2 cut(s)	180, 357
AccII	CGCG	1 cut(s)	555
AciI	CCGC	6 cut(s)	215, 463, 553, 555, 573, 609
AclWI	GGATC	3 cut(s)	86, 385, 396
AcsI	RAATTY	2 cut(s)	4, 260
AcuI	CTGAAG	1 cut(s)	121
AfaI	GTAC	2 cut(s)	73, 289
AfiI	CCNNNNNNNGG	1 cut(s)	559
AgsI	TTSAA	4 cut(s)	10, 62, 229, 503
AjnI	CCWGG	1 cut(s)	92
AluBI	AGCT	2 cut(s)	236, 373
AluI	AGCT	2 cut(s)	236, 373
Alw26I	GTCTC	1 cut(s)	191
AlwI	GGATC	3 cut(s)	86, 385, 396
ApeKI	GCWGC	1 cut(s)	754
ApoI	RAATTY	2 cut(s)	4, 260
AspS9I	GGNCC	1 cut(s)	495
AsuHPI	GGTGA	5 cut(s)	383, 428, 610, 692, 738
AsuII	TTCGAA	1 cut(s)	677
AvaII	GGWCC	1 cut(s)	495
AxyI	CCTNAGG	1 cut(s)	594
BaeGI	GKGCMC	1 cut(s)	93
BanI	GGYRCC	1 cut(s)	628
BbvI	GCAGC	1 cut(s)	741
BccI	CCATC	3 cut(s)	536, 557, 613
BciT130I	CCWGG	1 cut(s)	94
BciVI	GTATCC	1 cut(s)	512
BcoDI	GTCTC	1 cut(s)	191
BfaI	CTAG	3 cut(s)	36, 194, 374
BfmI	CTRYAG	3 cut(s)	237, 568, 706
BfuAI	ACCTGC	1 cut(s)	531
BfuI	GTATCC	1 cut(s)	512
BglII	AGATCT	1 cut(s)	112
BisI	GCNGC	2 cut(s)	609, 755
BlsI	GCNGC	2 cut(s)	610, 756
Bme1390I	CCNGG	1 cut(s)	94
Bme18I	GGWCC	1 cut(s)	495
BmgT120I	GGNCC	1 cut(s)	495
BmiI	GGNNCC	2 cut(s)	588, 630
BmrFI	CCNGG	1 cut(s)	94
BmsI	GCATC	2 cut(s)	256, 336
BplI	GAGNNNNNCTC	2 cut(s)	677, 709
Bpu14I	TTCGAA	1 cut(s)	677
BsaJI	CCNNGG	6 cut(s)	92, 93, 270, 421, 553, 749
Bsc4I	CCNNNNNNNGG	1 cut(s)	559
Bse1I	ACTGG	2 cut(s)	205, 741
Bse21I	CCTNAGG	1 cut(s)	594
BseBI	CCWGG	1 cut(s)	94
BseDI	CCNNGG	6 cut(s)	92, 93, 270, 421, 553, 749
BseGI	GGATG	2 cut(s)	298, 568
BseLI	CCNNNNNNNGG	1 cut(s)	559
BseMII	CTCAG	2 cut(s)	298, 585
BseNI	ACTGG	2 cut(s)	205, 741
BseRI	GAGGAG	3 cut(s)	56, 356, 561
BseSI	GKGCMC	1 cut(s)	93
BseXI	GCAGC	1 cut(s)	741
BseYI	CCCAGC	1 cut(s)	623
Bsh1236I	CGCG	1 cut(s)	555
Bsh1285I	CGRYCG	1 cut(s)	410
BshNI	GGYRCC	1 cut(s)	628
BsiEI	CGRYCG	1 cut(s)	410
BslI	CCNNNNNNNGG	1 cut(s)	559
BsmAI	GTCTC	1 cut(s)	191
Bsp119I	TTCGAA	1 cut(s)	677
Bsp1286I	GDGCHC	1 cut(s)	93
Bsp1407I	TGTACA	1 cut(s)	71
Bsp143I	GATC	5 cut(s)	78, 112, 318, 377, 388
BspACI	CCGC	6 cut(s)	215, 463, 553, 555, 573, 609
BspCNI	CTCAG	2 cut(s)	297, 586
BspFNI	CGCG	1 cut(s)	555
BspLI	GGNNCC	2 cut(s)	588, 630
BspMAI	CTGCAG	1 cut(s)	710
BspMI	ACCTGC	1 cut(s)	531
BspPI	GGATC	3 cut(s)	86, 385, 396
BspT104I	TTCGAA	1 cut(s)	677
BspT107I	GGYRCC	1 cut(s)	628
BsrGI	TGTACA	1 cut(s)	71
BsrI	ACTGG	2 cut(s)	205, 741
BssECI	CCNNGG	6 cut(s)	92, 93, 270, 421, 553, 749
BssMI	GATC	5 cut(s)	78, 112, 318, 377, 388
BssNAI	GTATAC	2 cut(s)	181, 358
BssT1I	CCWWGG	1 cut(s)	421
Bst1107I	GTATAC	2 cut(s)	181, 358
Bst2UI	CCWGG	1 cut(s)	94
Bst4CI	ACNGT	2 cut(s)	14, 495
BstAUI	TGTACA	1 cut(s)	71
BstBI	TTCGAA	1 cut(s)	677
BstC8I	GCNNGC	1 cut(s)	718
BstDEI	CTNAG	2 cut(s)	284, 594
BstDSI	CCRYGG	1 cut(s)	553
BstEII	GGTNACC	1 cut(s)	416
BstF5I	GGATG	2 cut(s)	298, 568
BstFNI	CGCG	1 cut(s)	555
BstKTI	GATC	5 cut(s)	81, 115, 321, 380, 391
BstMAI	GTCTC	1 cut(s)	191
BstMBI	GATC	5 cut(s)	78, 112, 318, 377, 388
BstMCI	CGRYCG	1 cut(s)	410
BstNI	CCWGG	1 cut(s)	94
BstNSI	RCATGY	2 cut(s)	479, 730
BstPI	GGTNACC	1 cut(s)	416
BstSCI	CCNGG	1 cut(s)	92
BstSFI	CTRYAG	3 cut(s)	237, 568, 706
BstSLI	GKGCMC	1 cut(s)	93
BstUI	CGCG	1 cut(s)	555
BstV1I	GCAGC	1 cut(s)	741
BstX2I	RGATCY	1 cut(s)	112
BstYI	RGATCY	1 cut(s)	112
BstZ17I	GTATAC	2 cut(s)	181, 358
Bsu36I	CCTNAGG	1 cut(s)	594
BsuI	GTATCC	1 cut(s)	512
BtgI	CCRYGG	1 cut(s)	553
BtsCI	GGATG	2 cut(s)	298, 568
BtsI	GCAGTG	2 cut(s)	588, 703
BtsIMutI	CAGTG	3 cut(s)	538, 588, 703
BveI	ACCTGC	1 cut(s)	531
Cac8I	GCNNGC	1 cut(s)	718
Cfr13I	GGNCC	1 cut(s)	495
Cfr42I	CCGCGG	1 cut(s)	556
Csp6I	GTAC	2 cut(s)	72, 288
CviAII	CATG	5 cut(s)	82, 367, 398, 476, 727
CviQI	GTAC	2 cut(s)	72, 288
DdeI	CTNAG	2 cut(s)	284, 594
DpnI	GATC	5 cut(s)	80, 114, 320, 379, 390
DpnII	GATC	5 cut(s)	78, 112, 318, 377, 388
Eco130I	CCWWGG	1 cut(s)	421
Eco47I	GGWCC	1 cut(s)	495
Eco57I	CTGAAG	1 cut(s)	121
Eco81I	CCTNAGG	1 cut(s)	594
Eco91I	GGTNACC	1 cut(s)	416
EcoO65I	GGTNACC	1 cut(s)	416
EcoRII	CCWGG	1 cut(s)	92
EcoT14I	CCWWGG	1 cut(s)	421
ErhI	CCWWGG	1 cut(s)	421
FaeI	CATG	5 cut(s)	85, 370, 401, 479, 730
FatI	CATG	5 cut(s)	81, 366, 397, 475, 726
FauI	CCCGC	3 cut(s)	456, 548, 566
FblI	GTMKAC	2 cut(s)	180, 357
Fnu4HI	GCNGC	2 cut(s)	609, 755
FokI	GGATG	2 cut(s)	285, 575
Fsp4HI	GCNGC	2 cut(s)	609, 755
FspBI	CTAG	3 cut(s)	36, 194, 374
GluI	GCNGC	2 cut(s)	609, 755
GsaI	CCCAGC	1 cut(s)	627
Hin1II	CATG	5 cut(s)	85, 370, 401, 479, 730
HinfI	GANTC	2 cut(s)	229, 549
HphI	GGTGA	5 cut(s)	383, 428, 610, 692, 738
Hpy166II	GTNNAC	3 cut(s)	181, 358, 746
Hpy188I	TCNGA	2 cut(s)	110, 207
Hpy188III	TCNNGA	2 cut(s)	59, 194
Hpy8I	GTNNAC	3 cut(s)	181, 358, 746
HpyAV	CCTTC	2 cut(s)	155, 673
HpyCH4III	ACNGT	2 cut(s)	14, 495
HpyCH4V	TGCA	5 cut(s)	125, 173, 475, 708, 720
HpyF3I	CTNAG	2 cut(s)	284, 594
Hsp92II	CATG	5 cut(s)	85, 370, 401, 479, 730
KspI	CCGCGG	1 cut(s)	556
Kzo9I	GATC	5 cut(s)	78, 112, 318, 377, 388
LmnI	GCTCC	3 cut(s)	43, 370, 592
Lsp1109I	GCAGC	1 cut(s)	741
LweI	GCATC	2 cut(s)	256, 336
MaeI	CTAG	3 cut(s)	36, 194, 374
MaeIII	GTNAC	4 cut(s)	310, 416, 533, 598
MalI	GATC	5 cut(s)	80, 114, 320, 379, 390
MboI	GATC	5 cut(s)	78, 112, 318, 377, 388
MboII	GAAGA	2 cut(s)	61, 74
MfeI	CAATTG	1 cut(s)	439
MflI	RGATCY	1 cut(s)	112
MhlI	GDGCHC	1 cut(s)	93
MluCI	AATT	5 cut(s)	4, 260, 277, 439, 696
MlyI	GAGTC	1 cut(s)	558
MslI	CAYNNNNRTG	2 cut(s)	86, 396
MspA1I	CMGCKG	2 cut(s)	555, 611
MspR9I	CCNGG	1 cut(s)	94
MunI	CAATTG	1 cut(s)	439
MvaI	CCWGG	1 cut(s)	94
MvnI	CGCG	1 cut(s)	555
NdeII	GATC	5 cut(s)	78, 112, 318, 377, 388
NlaIII	CATG	5 cut(s)	85, 370, 401, 479, 730
NlaIV	GGNNCC	2 cut(s)	588, 630
NmeAIII	GCCGAG	2 cut(s)	295, 713
NmuCI	GTSAC	3 cut(s)	416, 533, 598
NspI	RCATGY	2 cut(s)	479, 730
NspV	TTCGAA	1 cut(s)	677
PasI	CCCWGGG	1 cut(s)	93
PfeI	GAWTC	1 cut(s)	229
PkrI	GCNGC	2 cut(s)	610, 756
PleI	GAGTC	1 cut(s)	557
PpsI	GAGTC	1 cut(s)	557
Psp6I	CCWGG	1 cut(s)	92
PspEI	GGTNACC	1 cut(s)	416
PspFI	CCCAGC	1 cut(s)	623
PspGI	CCWGG	1 cut(s)	92
PspN4I	GGNNCC	2 cut(s)	588, 630
PspPI	GGNCC	1 cut(s)	495
PstI	CTGCAG	1 cut(s)	710
PsuI	RGATCY	1 cut(s)	112
RsaI	GTAC	2 cut(s)	73, 289
RsaNI	GTAC	2 cut(s)	72, 288
RseI	CAYNNNNRTG	2 cut(s)	86, 396
SacII	CCGCGG	1 cut(s)	556
SatI	GCNGC	2 cut(s)	609, 755
Sau3AI	GATC	5 cut(s)	78, 112, 318, 377, 388
Sau96I	GGNCC	1 cut(s)	495
SchI	GAGTC	1 cut(s)	558
ScrFI	CCNGG	1 cut(s)	94
SduI	GDGCHC	1 cut(s)	93
SetI	ASST	8 cut(s)	238, 375, 396, 471, 525, 600, 648, 684
SfaNI	GCATC	2 cut(s)	256, 336
SfcI	CTRYAG	3 cut(s)	237, 568, 706
Sfr303I	CCGCGG	1 cut(s)	556
SfuI	TTCGAA	1 cut(s)	677
SgrBI	CCGCGG	1 cut(s)	556
SinI	GGWCC	1 cut(s)	495
SmiMI	CAYNNNNRTG	2 cut(s)	86, 396
Sse9I	AATT	5 cut(s)	4, 260, 277, 439, 696
SsiI	CCGC	6 cut(s)	215, 463, 553, 555, 573, 609
SspMI	CTAG	3 cut(s)	36, 194, 374
StyD4I	CCNGG	1 cut(s)	92
StyI	CCWWGG	1 cut(s)	421
TaaI	ACNGT	2 cut(s)	14, 495
TaqI	TCGA	2 cut(s)	406, 677
TaqII	GACCGA	1 cut(s)	424
TasI	AATT	5 cut(s)	4, 260, 277, 439, 696
TatI	WGTACW	2 cut(s)	71, 287
TauI	GCSGC	1 cut(s)	611
TfiI	GAWTC	1 cut(s)	229
TscAI	CASTG	3 cut(s)	538, 588, 710
TseFI	GTSAC	3 cut(s)	416, 533, 598
TseI	GCWGC	1 cut(s)	754
Tsp45I	GTSAC	3 cut(s)	416, 533, 598
TspDTI	ATGAA	3 cut(s)	17, 35, 355
TspRI	CASTG	3 cut(s)	538, 588, 710
VpaK11BI	GGWCC	1 cut(s)	495
XapI	RAATTY	2 cut(s)	4, 260
XbaI	TCTAGA	1 cut(s)	193
XceI	RCATGY	2 cut(s)	479, 730
XmiI	GTMKAC	2 cut(s)	180, 357
XspI	CTAG	3 cut(s)	36, 194, 374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.