AT1G21695

BEST Arabidopsis thaliana protein match is hydroxyproline-rich glycoprotein family protein (TAIR AT1G21695.1)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0016594
Physical Location & Seq
Forward (+)
7618862 .. 7619919
1058 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G21695.1

Sequence Viewer

Length: 654 bp
ATGGTCGATGGTGACGATTCTTTCAAGAGACCCGGAGCTGTGCCTTTTAAGTGGGAGATCCGACCCGGTGTACCTAAAACCCGACCCGGTGATGATGATCCAGCTCTTCTTCAACCACCTCCTCCTAACAAACTTCCTCCTCTCAAATTAAAATCAACTCCGCCGTCGAATTCGCCATCTCCGTCGTCTTCTTCTTCTTTCTTCTCTGAATCCAGAAGCCGACCAGTCTCTCCCTTCGCTCCTCCTCCGTCTTTCAAGCTGAAATCGCCTTCAGATTCCGACTCCAACTGTTCAGCATCTCCGACTCCATATTTCCGATCTTCTTCTCCTCGTGCCGGTGGCTCATTGCCTCGGTGTTTTTTTCCCAAGTCATTATTTGGGTTGAAAAAGAGTAAGAGCGGCGATTTAAAAAAGACCGGTCAGCAGGAACCATCATCAACAACATCGGAGTCTGACAATTTCTATGAATCGGGAACAACGCTTTCTCCGTCGGAAGAAGATTCTAGCCAGGGATCGCCGGTATCTTCGAGGTGGAGTTCGCCGAAATCGTCCTTCTCTTCTCGCCGTGGTTCGCCGCTAAAACGGACTGATTCGGATTTAAGCTCTTATGAGAAAAAAACCATGTTAATGATAGCTCGTTCCCGCCTTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF688

Protein Analysis

217

Amino Acids

23.38

Weight (kDa)

9.81

Isoelectric Point (pI)

98.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016594)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21695 AT1G77400
fragaria_vesca FvH4_2g27560
malus_domestica MD15G1344600.v1.1
prunus_persica Prupe.1G492300_v2.0.a1
pyrus_communis pycom15g30780
rosa_chinensis RchiOBHm_Chr6g0296401
rosa_laevigata RLG00000011696
rosa_roxburghii Rroxscaffold_7G00171580 Rroxscaffold_7G00178530
rosa_rugosa Rorug06G0262000
rosa_samantha Rh6BG381700 Rh6DG374300
rosa_wichuraiana Rw6G032560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 399
AciI CCGC 4 cut(s) 161, 399, 575, 643
AclWI GGATC 3 cut(s) 52, 92, 520
AcsI RAATTY 1 cut(s) 169
AcuI CTGAAG 1 cut(s) 255
AfaI GTAC 1 cut(s) 72
AfiI CCNNNNNNNGG 1 cut(s) 335
AgeI ACCGGT 1 cut(s) 416
AgsI TTSAA 4 cut(s) 25, 113, 256, 385
AjnI CCWGG 1 cut(s) 507
AluBI AGCT 5 cut(s) 38, 104, 259, 603, 635
AluI AGCT 5 cut(s) 38, 104, 259, 603, 635
Alw26I GTCTC 2 cut(s) 22, 232
AlwI GGATC 3 cut(s) 52, 92, 520
ApoI RAATTY 1 cut(s) 169
AsiGI ACCGGT 1 cut(s) 416
AsuC2I CCSGG 3 cut(s) 33, 66, 87
AsuHPI GGTGA 2 cut(s) 23, 101
BauI CACGAG 1 cut(s) 330
BbsI GAAGAC 1 cut(s) 180
BccI CCATC 3 cut(s) 2, 184, 439
BceAI ACGGC 2 cut(s) 148, 549
BciT130I CCWGG 1 cut(s) 509
BcnI CCSGG 3 cut(s) 33, 66, 87
BcoDI GTCTC 2 cut(s) 22, 232
BfaI CTAG 1 cut(s) 504
BisI GCNGC 2 cut(s) 400, 575
BlsI GCNGC 2 cut(s) 401, 576
Bme1390I CCNGG 4 cut(s) 33, 66, 87, 509
BmiI GGNNCC 1 cut(s) 429
BmrFI CCNGG 4 cut(s) 33, 66, 87, 509
BmsI GCATC 1 cut(s) 305
BpiI GAAGAC 1 cut(s) 180
BpuMI CCSGG 3 cut(s) 33, 66, 87
BsaBI GATNNNNATC 1 cut(s) 96
BsaI GGTCTC 1 cut(s) 22
BsaJI CCNNGG 4 cut(s) 350, 508, 565, 646
BsaWI WCCGGW 1 cut(s) 416
BsaXI ACNNNNNCTCC 2 cut(s) 469, 499
Bsc4I CCNNNNNNNGG 1 cut(s) 335
Bse118I RCCGGY 3 cut(s) 335, 416, 517
Bse1I ACTGG 1 cut(s) 224
Bse3DI GCAATG 1 cut(s) 344
Bse8I GATNNNNATC 1 cut(s) 96
BseBI CCWGG 1 cut(s) 509
BseDI CCNNGG 4 cut(s) 350, 508, 565, 646
BseJI GATNNNNATC 1 cut(s) 96
BseLI CCNNNNNNNGG 1 cut(s) 335
BseMI GCAATG 1 cut(s) 344
BseNI ACTGG 1 cut(s) 224
BseRI GAGGAG 5 cut(s) 111, 129, 231, 234, 318
BshTI ACCGGT 1 cut(s) 416
BsiSI CCGG 6 cut(s) 33, 66, 87, 336, 417, 518
BslI CCNNNNNNNGG 1 cut(s) 335
BsmAI GTCTC 2 cut(s) 22, 232
Bso31I GGTCTC 1 cut(s) 22
Bsp143I GATC 4 cut(s) 57, 97, 317, 512
BspACI CCGC 4 cut(s) 161, 399, 575, 643
BspLI GGNNCC 1 cut(s) 429
BspPI GGATC 3 cut(s) 52, 92, 520
BspQI GCTCTTC 1 cut(s) 111
BspTNI GGTCTC 1 cut(s) 22
BsrBI CCGCTC 1 cut(s) 399
BsrDI GCAATG 1 cut(s) 344
BsrFI RCCGGY 3 cut(s) 335, 416, 517
BsrI ACTGG 1 cut(s) 224
BssAI RCCGGY 3 cut(s) 335, 416, 517
BssECI CCNNGG 4 cut(s) 350, 508, 565, 646
BssMI GATC 4 cut(s) 57, 97, 317, 512
BssSI CACGAG 1 cut(s) 330
BssT1I CCWWGG 1 cut(s) 646
Bst2BI CACGAG 1 cut(s) 330
Bst2UI CCWGG 1 cut(s) 509
Bst4CI ACNGT 1 cut(s) 290
Bst6I CTCTTC 2 cut(s) 111, 562
BstDSI CCRYGG 1 cut(s) 565
BstKTI GATC 4 cut(s) 60, 100, 320, 515
BstMAI GTCTC 2 cut(s) 22, 232
BstMBI GATC 4 cut(s) 57, 97, 317, 512
BstMWI GCNNNNNNNGC 1 cut(s) 265
BstNI CCWGG 1 cut(s) 509
BstSCI CCNGG 4 cut(s) 31, 64, 85, 507
BstV2I GAAGAC 1 cut(s) 180
BstX2I RGATCY 1 cut(s) 57
BstYI RGATCY 1 cut(s) 57
BtgI CCRYGG 1 cut(s) 565
Cfr10I RCCGGY 3 cut(s) 335, 416, 517
Csp6I GTAC 1 cut(s) 71
CspAI ACCGGT 1 cut(s) 416
CviAII CATG 1 cut(s) 622
CviJI RGCY 8 cut(s) 38, 104, 219, 259, 342, 507, 603, 635
CviKI_1 RGCY 8 cut(s) 38, 104, 219, 259, 342, 507, 603, 635
CviQI GTAC 1 cut(s) 71
DpnI GATC 4 cut(s) 59, 99, 319, 514
DpnII GATC 4 cut(s) 57, 97, 317, 512
DraI TTTAAA 1 cut(s) 408
Eam1104I CTCTTC 2 cut(s) 111, 562
EarI CTCTTC 2 cut(s) 111, 562
EciI GGCGGA 1 cut(s) 150
Eco130I CCWWGG 1 cut(s) 646
Eco31I GGTCTC 1 cut(s) 22
Eco57I CTGAAG 1 cut(s) 255
EcoRI GAATTC 1 cut(s) 169
EcoRII CCWGG 1 cut(s) 507
EcoT14I CCWWGG 1 cut(s) 646
ErhI CCWWGG 1 cut(s) 646
FaeI CATG 1 cut(s) 625
FaiI YATR 4 cut(s) 310, 465, 609, 623
FatI CATG 1 cut(s) 621
FauI CCCGC 1 cut(s) 650
Fnu4HI GCNGC 2 cut(s) 400, 575
Fsp4HI GCNGC 2 cut(s) 400, 575
FspBI CTAG 1 cut(s) 504
GluI GCNGC 2 cut(s) 400, 575
HapII CCGG 6 cut(s) 33, 66, 87, 336, 417, 518
Hin1II CATG 1 cut(s) 625
HinfI GANTC 9 cut(s) 17, 209, 275, 281, 304, 449, 467, 500, 590
HpaII CCGG 6 cut(s) 33, 66, 87, 336, 417, 518
HphI GGTGA 2 cut(s) 23, 101
Hpy166II GTNNAC 1 cut(s) 71
Hpy188III TCNNGA 3 cut(s) 25, 213, 471
Hpy8I GTNNAC 1 cut(s) 71
Hpy99I CGWCG 3 cut(s) 169, 187, 493
HpyAV CCTTC 3 cut(s) 244, 279, 562
HpyCH4III ACNGT 1 cut(s) 290
HpyF10VI GCNNNNNNNGC 1 cut(s) 265
Hsp92II CATG 1 cut(s) 625
Kzo9I GATC 4 cut(s) 57, 97, 317, 512
LguI GCTCTTC 1 cut(s) 111
LmnI GCTCC 2 cut(s) 35, 244
LweI GCATC 1 cut(s) 305
MaeI CTAG 1 cut(s) 504
MaeIII GTNAC 1 cut(s) 11
MalI GATC 4 cut(s) 59, 99, 319, 514
MbiI CCGCTC 1 cut(s) 399
MboI GATC 4 cut(s) 57, 97, 317, 512
MflI RGATCY 1 cut(s) 57
MluCI AATT 3 cut(s) 146, 169, 457
MlyI GAGTC 3 cut(s) 275, 298, 458
MmeI TCCRAC 5 cut(s) 85, 303, 309, 326, 471
MnlI CCTC 9 cut(s) 129, 132, 147, 150, 252, 255, 339, 360, 522
MseI TTAA 6 cut(s) 48, 149, 407, 599, 626, 652
MslI CAYNNNNRTG 1 cut(s) 626
MspI CCGG 6 cut(s) 33, 66, 87, 336, 417, 518
MspR9I CCNGG 4 cut(s) 33, 66, 87, 509
MvaI CCWGG 1 cut(s) 509
MwoI GCNNNNNNNGC 1 cut(s) 265
NciI CCSGG 3 cut(s) 33, 66, 87
NdeII GATC 4 cut(s) 57, 97, 317, 512
NlaIII CATG 1 cut(s) 625
NlaIV GGNNCC 1 cut(s) 429
NmuCI GTSAC 1 cut(s) 11
PciSI GCTCTTC 1 cut(s) 111
PcsI WCGNNNNNNNCGW 4 cut(s) 12, 179, 485, 545
PfeI GAWTC 6 cut(s) 17, 209, 275, 467, 500, 590
PinAI ACCGGT 1 cut(s) 416
PkrI GCNGC 2 cut(s) 401, 576
PleI GAGTC 3 cut(s) 275, 298, 457
PpsI GAGTC 3 cut(s) 275, 298, 457
Psp6I CCWGG 1 cut(s) 507
PspGI CCWGG 1 cut(s) 507
PspN4I GGNNCC 1 cut(s) 429
PsuI RGATCY 1 cut(s) 57
RsaI GTAC 1 cut(s) 72
RsaNI GTAC 1 cut(s) 71
RseI CAYNNNNRTG 1 cut(s) 626
SapI GCTCTTC 1 cut(s) 111
SaqAI TTAA 6 cut(s) 48, 149, 407, 599, 626, 652
SatI GCNGC 2 cut(s) 400, 575
Sau3AI GATC 4 cut(s) 57, 97, 317, 512
SchI GAGTC 3 cut(s) 275, 298, 458
ScrFI CCNGG 4 cut(s) 33, 66, 87, 509
SetI ASST 8 cut(s) 40, 76, 106, 121, 261, 533, 605, 637
SfaNI GCATC 1 cut(s) 305
SmiMI CAYNNNNRTG 1 cut(s) 626
Sse9I AATT 3 cut(s) 146, 169, 457
SsiI CCGC 4 cut(s) 161, 399, 575, 643
SspMI CTAG 1 cut(s) 504
StyD4I CCNGG 4 cut(s) 31, 64, 85, 507
StyI CCWWGG 1 cut(s) 646
TaaI ACNGT 1 cut(s) 290
TaqI TCGA 3 cut(s) 6, 167, 527
TasI AATT 3 cut(s) 146, 169, 457
TauI GCSGC 2 cut(s) 402, 577
TfiI GAWTC 6 cut(s) 17, 209, 275, 467, 500, 590
Tru1I TTAA 6 cut(s) 48, 149, 407, 599, 626, 652
Tru9I TTAA 6 cut(s) 48, 149, 407, 599, 626, 652
TseFI GTSAC 1 cut(s) 11
Tsp45I GTSAC 1 cut(s) 11
TspDTI ATGAA 1 cut(s) 480
TspGWI ACGGA 4 cut(s) 171, 237, 477, 598
XapI RAATTY 1 cut(s) 169
XspI CTAG 1 cut(s) 504
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.