Rroxscaffold_7G00171580

BEST Arabidopsis thaliana protein match is hydroxyproline-rich glycoprotein family protein (TAIR AT1G21695.1)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0016594
Physical Location & Seq
Forward (+)
11858764 .. 11859339
576 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00171580.1

Sequence Viewer

Length: 546 bp
ATGGCGATTGATGAGTATGATTTCACAAAACCAGGAGCTATCCCATTTCAATGGGAAATACGCCCCGGCGTACCCAAAGTCCAACACCAACCACCGCCACCGCCACCGCCACCGCAAACTTGTGATTACAATCCTAGTCCTCTCAAGCCGCCACCAGCCGGGTTCGTTTTCGTGCCTCTAGCCGAGCCACGGACCCGGTCGTTTCGTTTGGGTTCTGCAACCCGATCGCGTTCAGAGCGGTGGAGGTTTGAGCAGCCCAATATGCTGGCCCGGCGACCCGATATGGTTTCGTCACCGGGGTGCTTCTTGTCTCCTCTGCTCAGGAGAAAGCTGAGCGGGAAAAAGGGGAAGAGTGGTGGTGCAAGAACGGTACCCGAACCCGAGCCCGAACCCGACTGCAGTTCTGACCTTGAAACACTGGCCCGGTGGTCGCTTTCTTCCCGGAAATCGCTGCTTTCGCCGACGTCGATGTCGTCGTACTCGTCCTACCAGTCGTCCCCGCGACCCGTAAGTGACGCAGAGTGGGCCGGGTTCGGACTCTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF688

Protein Analysis

181

Amino Acids

20.08

Weight (kDa)

9.62

Isoelectric Point (pI)

85.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016594)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21695 AT1G77400
fragaria_vesca FvH4_2g27560
malus_domestica MD15G1344600.v1.1
prunus_persica Prupe.1G492300_v2.0.a1
pyrus_communis pycom15g30780
rosa_chinensis RchiOBHm_Chr6g0296401
rosa_laevigata RLG00000011696
rosa_roxburghii Rroxscaffold_7G00171580 Rroxscaffold_7G00178530
rosa_rugosa Rorug06G0262000
rosa_samantha Rh6BG381700 Rh6DG374300
rosa_wichuraiana Rw6G032560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 469
AatII GACGTC 1 cut(s) 467
Acc65I GGTACC 1 cut(s) 370
AccB1I GGYRCC 1 cut(s) 370
AccBSI CCGCTC 2 cut(s) 238, 336
AccII CGCG 2 cut(s) 229, 502
AciI CCGC 8 cut(s) 95, 101, 107, 113, 149, 238, 336, 500
AcyI GRCGYC 1 cut(s) 464
AfaI GTAC 3 cut(s) 72, 372, 479
AfiI CCNNNNNNNGG 2 cut(s) 158, 189
AgsI TTSAA 2 cut(s) 50, 413
AjnI CCWGG 1 cut(s) 31
AleI CACNNNNGTG 1 cut(s) 298
AluBI AGCT 2 cut(s) 38, 331
AluI AGCT 2 cut(s) 38, 331
Alw26I GTCTC 1 cut(s) 315
Ama87I CYCGRG 1 cut(s) 380
AoxI GGCC 3 cut(s) 267, 420, 525
ApeKI GCWGC 2 cut(s) 253, 451
Asp718I GGTACC 1 cut(s) 370
AspS9I GGNCC 4 cut(s) 192, 268, 421, 525
AsuC2I CCSGG 8 cut(s) 66, 160, 196, 271, 297, 424, 442, 529
AsuHPI GGTGA 1 cut(s) 285
AvaI CYCGRG 1 cut(s) 380
AvaII GGWCC 1 cut(s) 192
BanI GGYRCC 1 cut(s) 370
BanII GRGCYC 1 cut(s) 387
BbvI GCAGC 2 cut(s) 265, 438
BcgI CGANNNNNNTGC 2 cut(s) 207, 241
BciT130I CCWGG 1 cut(s) 33
BcnI CCSGG 8 cut(s) 66, 160, 196, 271, 297, 424, 442, 529
BcoDI GTCTC 1 cut(s) 315
BfaI CTAG 2 cut(s) 135, 179
BfmI CTRYAG 1 cut(s) 397
BisI GCNGC 3 cut(s) 149, 254, 452
BlpI GCTNAGC 1 cut(s) 332
BlsI GCNGC 3 cut(s) 150, 255, 453
Bme1390I CCNGG 9 cut(s) 33, 66, 160, 196, 271, 297, 424, 442, 529
Bme18I GGWCC 1 cut(s) 192
BmeT110I CYCGRG 1 cut(s) 380
BmgT120I GGNCC 4 cut(s) 192, 268, 421, 525
BmiI GGNNCC 2 cut(s) 194, 372
BmrFI CCNGG 9 cut(s) 33, 66, 160, 196, 271, 297, 424, 442, 529
Bpu10I CCTNAGC 1 cut(s) 320
Bpu1102I GCTNAGC 1 cut(s) 332
BpuEI CTTGAG 1 cut(s) 128
BpuMI CCSGG 8 cut(s) 66, 160, 196, 271, 297, 424, 442, 529
BsaBI GATNNNNATC 1 cut(s) 129
BsaHI GRCGYC 1 cut(s) 464
BsaJI CCNNGG 3 cut(s) 64, 188, 296
Bsc4I CCNNNNNNNGG 2 cut(s) 158, 189
Bse1I ACTGG 2 cut(s) 423, 490
Bse8I GATNNNNATC 1 cut(s) 129
BseBI CCWGG 1 cut(s) 33
BseDI CCNNGG 3 cut(s) 64, 188, 296
BseJI GATNNNNATC 1 cut(s) 129
BseLI CCNNNNNNNGG 2 cut(s) 158, 189
BseMII CTCAG 2 cut(s) 323, 334
BseNI ACTGG 2 cut(s) 423, 490
BseRI GAGGAG 1 cut(s) 303
BseXI GCAGC 2 cut(s) 265, 438
Bsh1236I CGCG 2 cut(s) 229, 502
Bsh1285I CGRYCG 2 cut(s) 200, 227
BshFI GGCC 3 cut(s) 269, 422, 527
BshNI GGYRCC 1 cut(s) 370
BsiEI CGRYCG 2 cut(s) 200, 227
BsiHKCI CYCGRG 1 cut(s) 380
BsiSI CCGG 8 cut(s) 66, 159, 196, 271, 296, 424, 442, 528
BslFI GGGAC 1 cut(s) 481
BslI CCNNNNNNNGG 2 cut(s) 158, 189
BsmAI GTCTC 1 cut(s) 315
BsmFI GGGAC 1 cut(s) 481
BsnI GGCC 3 cut(s) 269, 422, 527
BsoBI CYCGRG 1 cut(s) 380
Bsp1286I GDGCHC 1 cut(s) 387
Bsp143I GATC 1 cut(s) 224
Bsp1720I GCTNAGC 1 cut(s) 332
BspACI CCGC 8 cut(s) 95, 101, 107, 113, 149, 238, 336, 500
BspANI GGCC 3 cut(s) 269, 422, 527
BspCNI CTCAG 2 cut(s) 324, 333
BspFNI CGCG 2 cut(s) 229, 502
BspLI GGNNCC 2 cut(s) 194, 372
BspMAI CTGCAG 1 cut(s) 401
BspT107I GGYRCC 1 cut(s) 370
BsrBI CCGCTC 2 cut(s) 238, 336
BsrI ACTGG 2 cut(s) 423, 490
BssECI CCNNGG 3 cut(s) 64, 188, 296
BssMI GATC 1 cut(s) 224
BssNI GRCGYC 1 cut(s) 464
Bst2UI CCWGG 1 cut(s) 33
Bst4CI ACNGT 1 cut(s) 370
Bst6I CTCTTC 1 cut(s) 344
BstACI GRCGYC 1 cut(s) 464
BstC8I GCNNGC 1 cut(s) 267
BstDEI CTNAG 2 cut(s) 320, 332
BstDSI CCRYGG 1 cut(s) 188
BstFNI CGCG 2 cut(s) 229, 502
BstKTI GATC 1 cut(s) 227
BstMAI GTCTC 1 cut(s) 315
BstMBI GATC 1 cut(s) 224
BstMCI CGRYCG 2 cut(s) 200, 227
BstMWI GCNNNNNNNGC 5 cut(s) 235, 262, 271, 457, 524
BstNI CCWGG 1 cut(s) 33
BstSCI CCNGG 9 cut(s) 31, 64, 158, 194, 269, 295, 422, 440, 527
BstSFI CTRYAG 1 cut(s) 397
BstUI CGCG 2 cut(s) 229, 502
BstV1I GCAGC 2 cut(s) 265, 438
BstXI CCANNNNNNTGG 2 cut(s) 51, 265
BsuRI GGCC 3 cut(s) 269, 422, 527
BtgI CCRYGG 1 cut(s) 188
BtsIMutI CAGTG 1 cut(s) 416
Cac8I GCNNGC 1 cut(s) 267
Cfr13I GGNCC 4 cut(s) 192, 268, 421, 525
CseI GACGC 1 cut(s) 524
Csp6I GTAC 3 cut(s) 71, 371, 478
CviQI GTAC 3 cut(s) 71, 371, 478
DdeI CTNAG 2 cut(s) 320, 332
DpnI GATC 1 cut(s) 226
DpnII GATC 1 cut(s) 224
DrdI GACNNNNNNGTC 1 cut(s) 469
DseDI GACNNNNNNGTC 1 cut(s) 469
Eam1104I CTCTTC 1 cut(s) 344
EarI CTCTTC 1 cut(s) 344
Eco24I GRGCYC 1 cut(s) 387
Eco47I GGWCC 1 cut(s) 192
Eco88I CYCGRG 1 cut(s) 380
EcoRII CCWGG 1 cut(s) 31
EcoT38I GRGCYC 1 cut(s) 387
FaiI YATR 3 cut(s) 18, 263, 284
FaqI GGGAC 1 cut(s) 481
FauI CCCGC 2 cut(s) 329, 507
Fnu4HI GCNGC 3 cut(s) 149, 254, 452
FriOI GRGCYC 1 cut(s) 387
Fsp4HI GCNGC 3 cut(s) 149, 254, 452
FspBI CTAG 2 cut(s) 135, 179
GluI GCNGC 3 cut(s) 149, 254, 452
HaeIII GGCC 3 cut(s) 269, 422, 527
HapII CCGG 8 cut(s) 66, 159, 196, 271, 296, 424, 442, 528
HgaI GACGC 1 cut(s) 524
Hin1I GRCGYC 1 cut(s) 464
HinfI GANTC 1 cut(s) 537
HpaII CCGG 8 cut(s) 66, 159, 196, 271, 296, 424, 442, 528
HphI GGTGA 1 cut(s) 285
Hpy188I TCNGA 3 cut(s) 235, 406, 536
Hpy188III TCNNGA 1 cut(s) 322
Hpy99I CGWCG 3 cut(s) 466, 469, 478
HpyCH4III ACNGT 1 cut(s) 370
HpyCH4IV ACGT 1 cut(s) 464
HpyCH4V TGCA 3 cut(s) 218, 362, 399
HpyF10VI GCNNNNNNNGC 5 cut(s) 235, 262, 271, 457, 524
HpyF3I CTNAG 2 cut(s) 320, 332
HpySE526I ACGT 1 cut(s) 464
Hsp92I GRCGYC 1 cut(s) 464
KpnI GGTACC 1 cut(s) 374
Kzo9I GATC 1 cut(s) 224
LmnI GCTCC 1 cut(s) 35
Lsp1109I GCAGC 2 cut(s) 265, 438
MaeI CTAG 2 cut(s) 135, 179
MaeII ACGT 1 cut(s) 464
MaeIII GTNAC 2 cut(s) 291, 512
MalI GATC 1 cut(s) 226
MbiI CCGCTC 2 cut(s) 238, 336
MboI GATC 1 cut(s) 224
MboII GAAGA 2 cut(s) 361, 429
MhlI GDGCHC 1 cut(s) 387
MlyI GAGTC 1 cut(s) 531
MmeI TCCRAC 1 cut(s) 106
MnlI CCTC 4 cut(s) 150, 186, 237, 324
MslI CAYNNNNRTG 2 cut(s) 49, 298
MspI CCGG 8 cut(s) 66, 159, 196, 271, 296, 424, 442, 528
MspR9I CCNGG 9 cut(s) 33, 66, 160, 196, 271, 297, 424, 442, 529
MvaI CCWGG 1 cut(s) 33
MvnI CGCG 2 cut(s) 229, 502
MwoI GCNNNNNNNGC 5 cut(s) 235, 262, 271, 457, 524
NciI CCSGG 8 cut(s) 66, 160, 196, 271, 297, 424, 442, 529
NdeII GATC 1 cut(s) 224
NlaIV GGNNCC 2 cut(s) 194, 372
NmeAIII GCCGAG 1 cut(s) 208
NmuCI GTSAC 2 cut(s) 291, 512
OliI CACNNNNGTG 1 cut(s) 298
PcsI WCGNNNNNNNCGW 4 cut(s) 464, 470, 473, 479
PflFI GACNNNGTC 1 cut(s) 196
PfoI TCCNGGA 1 cut(s) 440
PkrI GCNGC 3 cut(s) 150, 255, 453
Ple19I CGATCG 1 cut(s) 227
PleI GAGTC 1 cut(s) 531
PpsI GAGTC 1 cut(s) 531
Psp6I CCWGG 1 cut(s) 31
PspGI CCWGG 1 cut(s) 31
PspN4I GGNNCC 2 cut(s) 194, 372
PspPI GGNCC 4 cut(s) 192, 268, 421, 525
PstI CTGCAG 1 cut(s) 401
PsyI GACNNNGTC 1 cut(s) 196
PvuI CGATCG 1 cut(s) 227
RsaI GTAC 3 cut(s) 72, 372, 479
RsaNI GTAC 3 cut(s) 71, 371, 478
RseI CAYNNNNRTG 2 cut(s) 49, 298
SatI GCNGC 3 cut(s) 149, 254, 452
Sau3AI GATC 1 cut(s) 224
Sau96I GGNCC 4 cut(s) 192, 268, 421, 525
SchI GAGTC 1 cut(s) 531
ScrFI CCNGG 9 cut(s) 33, 66, 160, 196, 271, 297, 424, 442, 529
SduI GDGCHC 1 cut(s) 387
SetI ASST 5 cut(s) 40, 248, 333, 411, 467
SfcI CTRYAG 1 cut(s) 397
SinI GGWCC 1 cut(s) 192
SmiMI CAYNNNNRTG 2 cut(s) 49, 298
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
SsiI CCGC 8 cut(s) 95, 101, 107, 113, 149, 238, 336, 500
SspMI CTAG 2 cut(s) 135, 179
StyD4I CCNGG 9 cut(s) 31, 64, 158, 194, 269, 295, 422, 440, 527
TaaI ACNGT 1 cut(s) 370
TaiI ACGT 1 cut(s) 467
TaqI TCGA 1 cut(s) 467
TauI GCSGC 1 cut(s) 151
TscAI CASTG 1 cut(s) 423
TseFI GTSAC 2 cut(s) 291, 512
TseI GCWGC 2 cut(s) 253, 451
Tsp45I GTSAC 2 cut(s) 291, 512
TspGWI ACGGA 1 cut(s) 205
TspRI CASTG 1 cut(s) 423
Tth111I GACNNNGTC 1 cut(s) 196
VpaK11BI GGWCC 1 cut(s) 192
XspI CTAG 2 cut(s) 135, 179
ZraI GACGTC 1 cut(s) 465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.