Prupe.1G492300_v2.0.a1

BEST Arabidopsis thaliana protein match is hydroxyproline-rich glycoprotein family protein (TAIR AT1G21695.1)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0016594
Physical Location & Seq
Forward (+)
40935422 .. 40936458
1037 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G492300.1

Sequence Viewer

Length: 585 bp
ATGAAACAAATGGCAATAGATGATTATGATGACTCTTTCACAAAACCAGGAGCAATCCCATTCAAATGGGAAATCCGACCTGGCGTCCCCAAAATCCAAACCCAACAACAGAAACAACCACTACCACCACCTCCACAGCCGCATATTCACAAACACCTTAACCTCAAACCCCCACCATCCGGGTCACTCTTCCTGCCGCCACCGGAGCCCCATACCCGAAGTCGCTCCTTCCGCTCTGCTTCCGCCGCTCGAACCCGGTCAGAGCGCTGGCGATTCGAGCAGCCCGATAACATCCTTGCCCGGCGACCCGGACGACCCGACACCGTTTCAGCCGGGTGCTTCATGTCTCCACTTCTGAGGCGGAAGTCAGCGAGCAATAGCAAAAGGGGGAGCGGAGCTAGAACGGTACCCGTACCCGAGTCCGAACCCGACTACACTTCGGACCTTGAGACGCTGGCCCGGTGGTCTCTGTCGTCTCGGAAATCGCTGCTCTCGCCGTTCCGTGACTCACCCACGTCCACGTCCTCCTCGTCGTCCCCGCGACCCGTATGCGACGCTGAGTGGGCCGGGTTCGGGCTCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF688

Protein Analysis

195

Amino Acids

21.66

Weight (kDa)

10.26

Isoelectric Point (pI)

92.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016594)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21695 AT1G77400
fragaria_vesca FvH4_2g27560
malus_domestica MD15G1344600.v1.1
prunus_persica Prupe.1G492300_v2.0.a1
pyrus_communis pycom15g30780
rosa_chinensis RchiOBHm_Chr6g0296401
rosa_laevigata RLG00000011696
rosa_roxburghii Rroxscaffold_7G00171580 Rroxscaffold_7G00178530
rosa_rugosa Rorug06G0262000
rosa_samantha Rh6BG381700 Rh6DG374300
rosa_wichuraiana Rw6G032560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 406
AccB1I GGYRCC 1 cut(s) 406
AccBSI CCGCTC 3 cut(s) 234, 248, 393
AccII CGCG 1 cut(s) 541
AciI CCGC 8 cut(s) 140, 197, 232, 243, 246, 361, 393, 539
AcyI GRCGYC 1 cut(s) 84
AfaI GTAC 2 cut(s) 408, 414
AfeI AGCGCT 1 cut(s) 266
AfiI CCNNNNNNNGG 2 cut(s) 179, 573
AgsI TTSAA 1 cut(s) 64
AhdI GACNNNNNGTC 1 cut(s) 83
AjiI CACGTC 2 cut(s) 516, 522
AjnI CCWGG 2 cut(s) 46, 79
AluBI AGCT 1 cut(s) 398
AluI AGCT 1 cut(s) 398
Alw26I GTCTC 4 cut(s) 351, 443, 471, 480
Ama87I CYCGRG 1 cut(s) 416
Aor51HI AGCGCT 1 cut(s) 266
AoxI GGCC 2 cut(s) 456, 564
ApeKI GCWGC 2 cut(s) 280, 487
Asp718I GGTACC 1 cut(s) 406
AspLEI GCGC 1 cut(s) 267
AspS9I GGNCC 3 cut(s) 442, 457, 564
AsuC2I CCSGG 7 cut(s) 181, 256, 301, 309, 334, 460, 568
AsuHPI GGTGA 1 cut(s) 501
AvaI CYCGRG 1 cut(s) 416
AvaII GGWCC 1 cut(s) 442
BanI GGYRCC 1 cut(s) 406
BanII GRGCYC 2 cut(s) 210, 579
BbvI GCAGC 2 cut(s) 292, 474
BccI CCATC 1 cut(s) 184
BceAI ACGGC 1 cut(s) 481
BcgI CGANNNNNNTGC 2 cut(s) 531, 565
BciT130I CCWGG 2 cut(s) 48, 81
BcnI CCSGG 7 cut(s) 181, 256, 301, 309, 334, 460, 568
BcoDI GTCTC 4 cut(s) 351, 443, 471, 480
BfaI CTAG 1 cut(s) 399
BfoI RGCGCY 1 cut(s) 268
BisI GCNGC 5 cut(s) 140, 197, 246, 281, 488
BlsI GCNGC 5 cut(s) 141, 198, 247, 282, 489
Bme1390I CCNGG 9 cut(s) 48, 81, 181, 256, 301, 309, 334, 460, 568
Bme18I GGWCC 1 cut(s) 442
BmeRI GACNNNNNGTC 1 cut(s) 83
BmeT110I CYCGRG 1 cut(s) 416
BmgBI CACGTC 2 cut(s) 516, 522
BmgT120I GGNCC 3 cut(s) 442, 457, 564
BmiI GGNNCC 2 cut(s) 207, 408
BmrFI CCNGG 9 cut(s) 48, 81, 181, 256, 301, 309, 334, 460, 568
BpuEI CTTGAG 1 cut(s) 467
BpuMI CCSGG 7 cut(s) 181, 256, 301, 309, 334, 460, 568
BsaHI GRCGYC 1 cut(s) 84
BsaI GGTCTC 1 cut(s) 471
BsaWI WCCGGW 1 cut(s) 202
Bsc4I CCNNNNNNNGG 2 cut(s) 179, 573
BseBI CCWGG 2 cut(s) 48, 81
BseGI GGATG 2 cut(s) 176, 291
BseLI CCNNNNNNNGG 2 cut(s) 179, 573
BseMII CTCAG 2 cut(s) 347, 549
BseRI GAGGAG 1 cut(s) 517
BseXI GCAGC 2 cut(s) 292, 474
Bsh1236I CGCG 1 cut(s) 541
BshFI GGCC 2 cut(s) 458, 566
BshNI GGYRCC 1 cut(s) 406
BsiHKCI CYCGRG 1 cut(s) 416
BsiSI CCGG 8 cut(s) 180, 203, 256, 301, 309, 333, 460, 567
BslFI GGGAC 2 cut(s) 71, 520
BslI CCNNNNNNNGG 2 cut(s) 179, 573
BsmAI GTCTC 4 cut(s) 351, 443, 471, 480
BsmBI CGTCTC 2 cut(s) 443, 480
BsmFI GGGAC 2 cut(s) 71, 520
BsnI GGCC 2 cut(s) 458, 566
Bso31I GGTCTC 1 cut(s) 471
BsoBI CYCGRG 1 cut(s) 416
Bsp1286I GDGCHC 2 cut(s) 210, 579
BspACI CCGC 8 cut(s) 140, 197, 232, 243, 246, 361, 393, 539
BspANI GGCC 2 cut(s) 458, 566
BspCNI CTCAG 2 cut(s) 348, 550
BspFNI CGCG 1 cut(s) 541
BspLI GGNNCC 2 cut(s) 207, 408
BspT107I GGYRCC 1 cut(s) 406
BspTNI GGTCTC 1 cut(s) 471
BsrBI CCGCTC 3 cut(s) 234, 248, 393
BssNI GRCGYC 1 cut(s) 84
Bst2UI CCWGG 2 cut(s) 48, 81
Bst4CI ACNGT 2 cut(s) 325, 406
Bst6I CTCTTC 1 cut(s) 194
BstACI GRCGYC 1 cut(s) 84
BstC8I GCNNGC 3 cut(s) 269, 373, 456
BstDEI CTNAG 2 cut(s) 356, 558
BstF5I GGATG 2 cut(s) 176, 291
BstFNI CGCG 1 cut(s) 541
BstH2I RGCGCY 1 cut(s) 268
BstHHI GCGC 1 cut(s) 267
BstMAI GTCTC 4 cut(s) 351, 443, 471, 480
BstMWI GCNNNNNNNGC 6 cut(s) 205, 231, 245, 277, 493, 563
BstNI CCWGG 2 cut(s) 48, 81
BstSCI CCNGG 9 cut(s) 46, 79, 179, 254, 299, 307, 332, 458, 566
BstUI CGCG 1 cut(s) 541
BstV1I GCAGC 2 cut(s) 292, 474
BstXI CCANNNNNNTGG 1 cut(s) 66
BsuRI GGCC 2 cut(s) 458, 566
BtrI CACGTC 2 cut(s) 516, 522
BtsCI GGATG 2 cut(s) 176, 291
Cac8I GCNNGC 3 cut(s) 269, 373, 456
CfoI GCGC 1 cut(s) 267
Cfr13I GGNCC 3 cut(s) 442, 457, 564
CseI GACGC 3 cut(s) 73, 460, 563
Csp6I GTAC 2 cut(s) 407, 413
CviAII CATG 1 cut(s) 343
CviJI RGCY 8 cut(s) 139, 208, 283, 332, 398, 458, 566, 577
CviKI_1 RGCY 8 cut(s) 139, 208, 283, 332, 398, 458, 566, 577
CviQI GTAC 2 cut(s) 407, 413
DdeI CTNAG 2 cut(s) 356, 558
DriI GACNNNNNGTC 1 cut(s) 83
Eam1104I CTCTTC 1 cut(s) 194
Eam1105I GACNNNNNGTC 1 cut(s) 83
EarI CTCTTC 1 cut(s) 194
EciI GGCGGA 2 cut(s) 232, 376
Eco24I GRGCYC 2 cut(s) 210, 579
Eco31I GGTCTC 1 cut(s) 471
Eco47I GGWCC 1 cut(s) 442
Eco47III AGCGCT 1 cut(s) 266
Eco88I CYCGRG 1 cut(s) 416
EcoRII CCWGG 2 cut(s) 46, 79
EcoT38I GRGCYC 2 cut(s) 210, 579
Esp3I CGTCTC 2 cut(s) 443, 480
FaeI CATG 1 cut(s) 346
FaiI YATR 5 cut(s) 27, 144, 213, 344, 550
FaqI GGGAC 2 cut(s) 71, 520
FatI CATG 1 cut(s) 342
FauI CCCGC 1 cut(s) 546
Fnu4HI GCNGC 5 cut(s) 140, 197, 246, 281, 488
FokI GGATG 2 cut(s) 163, 278
FriOI GRGCYC 2 cut(s) 210, 579
Fsp4HI GCNGC 5 cut(s) 140, 197, 246, 281, 488
FspBI CTAG 1 cut(s) 399
GlaI GCGC 1 cut(s) 266
GluI GCNGC 5 cut(s) 140, 197, 246, 281, 488
HaeII RGCGCY 1 cut(s) 268
HaeIII GGCC 2 cut(s) 458, 566
HapII CCGG 8 cut(s) 180, 203, 256, 301, 309, 333, 460, 567
HgaI GACGC 3 cut(s) 73, 460, 563
HhaI GCGC 1 cut(s) 267
Hin1I GRCGYC 1 cut(s) 84
Hin1II CATG 1 cut(s) 346
Hin6I GCGC 1 cut(s) 265
HinP1I GCGC 1 cut(s) 265
HinfI GANTC 4 cut(s) 32, 273, 419, 506
HpaII CCGG 8 cut(s) 180, 203, 256, 301, 309, 333, 460, 567
HphI GGTGA 1 cut(s) 501
Hpy166II GTNNAC 1 cut(s) 519
Hpy188I TCNGA 6 cut(s) 77, 262, 357, 424, 442, 480
Hpy8I GTNNAC 1 cut(s) 519
Hpy99I CGWCG 2 cut(s) 535, 557
HpyAV CCTTC 1 cut(s) 238
HpyCH4III ACNGT 2 cut(s) 325, 406
HpyCH4IV ACGT 2 cut(s) 515, 521
HpyF10VI GCNNNNNNNGC 6 cut(s) 205, 231, 245, 277, 493, 563
HpyF3I CTNAG 2 cut(s) 356, 558
HpySE526I ACGT 2 cut(s) 515, 521
Hsp92I GRCGYC 1 cut(s) 84
Hsp92II CATG 1 cut(s) 346
HspAI GCGC 1 cut(s) 265
KpnI GGTACC 1 cut(s) 410
LmnI GCTCC 5 cut(s) 50, 205, 230, 390, 395
Lsp1109I GCAGC 2 cut(s) 292, 474
MaeI CTAG 1 cut(s) 399
MaeII ACGT 2 cut(s) 515, 521
MaeIII GTNAC 2 cut(s) 183, 503
MbiI CCGCTC 3 cut(s) 234, 248, 393
MboII GAAGA 1 cut(s) 181
MhlI GDGCHC 2 cut(s) 210, 579
MlyI GAGTC 3 cut(s) 26, 428, 500
MmeI TCCRAC 1 cut(s) 100
MnlI CCTC 5 cut(s) 141, 173, 351, 535, 538
MseI TTAA 1 cut(s) 159
MslI CAYNNNNRTG 1 cut(s) 64
MspI CCGG 8 cut(s) 180, 203, 256, 301, 309, 333, 460, 567
MspR9I CCNGG 9 cut(s) 48, 81, 181, 256, 301, 309, 334, 460, 568
MvaI CCWGG 2 cut(s) 48, 81
MvnI CGCG 1 cut(s) 541
MwoI GCNNNNNNNGC 6 cut(s) 205, 231, 245, 277, 493, 563
NciI CCSGG 7 cut(s) 181, 256, 301, 309, 334, 460, 568
NlaIII CATG 1 cut(s) 346
NlaIV GGNNCC 2 cut(s) 207, 408
NmuCI GTSAC 2 cut(s) 183, 503
PcsI WCGNNNNNNNCGW 2 cut(s) 282, 527
PfeI GAWTC 1 cut(s) 273
PkrI GCNGC 5 cut(s) 141, 198, 247, 282, 489
PleI GAGTC 3 cut(s) 26, 427, 500
PpsI GAGTC 3 cut(s) 26, 427, 500
Psp6I CCWGG 2 cut(s) 46, 79
PspGI CCWGG 2 cut(s) 46, 79
PspN4I GGNNCC 2 cut(s) 207, 408
PspPI GGNCC 3 cut(s) 442, 457, 564
RsaI GTAC 2 cut(s) 408, 414
RsaNI GTAC 2 cut(s) 407, 413
RseI CAYNNNNRTG 1 cut(s) 64
SaqAI TTAA 1 cut(s) 159
SatI GCNGC 5 cut(s) 140, 197, 246, 281, 488
Sau96I GGNCC 3 cut(s) 442, 457, 564
SchI GAGTC 3 cut(s) 26, 428, 500
ScrFI CCNGG 9 cut(s) 48, 81, 181, 256, 301, 309, 334, 460, 568
SduI GDGCHC 2 cut(s) 210, 579
SetI ASST 8 cut(s) 82, 133, 159, 165, 400, 447, 518, 524
SinI GGWCC 1 cut(s) 442
SmiMI CAYNNNNRTG 1 cut(s) 64
SmlI CTYRAG 1 cut(s) 446
SmoI CTYRAG 1 cut(s) 446
SsiI CCGC 8 cut(s) 140, 197, 232, 243, 246, 361, 393, 539
SspMI CTAG 1 cut(s) 399
StyD4I CCNGG 9 cut(s) 46, 79, 179, 254, 299, 307, 332, 458, 566
TaaI ACNGT 2 cut(s) 325, 406
TaiI ACGT 2 cut(s) 518, 524
TaqI TCGA 2 cut(s) 250, 276
TauI GCSGC 3 cut(s) 142, 199, 248
TfiI GAWTC 1 cut(s) 273
Tru1I TTAA 1 cut(s) 159
Tru9I TTAA 1 cut(s) 159
TseFI GTSAC 2 cut(s) 183, 503
TseI GCWGC 2 cut(s) 280, 487
Tsp45I GTSAC 2 cut(s) 183, 503
TspDTI ATGAA 2 cut(s) 17, 331
TspGWI ACGGA 1 cut(s) 491
VpaK11BI GGWCC 1 cut(s) 442
XspI CTAG 1 cut(s) 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.