AT1G77400

BEST Arabidopsis thaliana protein match is hydroxyproline-rich glycoprotein family protein (TAIR AT1G21695.1)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0016594
Physical Location & Seq
Forward (+)
29085575 .. 29086925
1351 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G77400.1

Sequence Viewer

Length: 699 bp
ATGGCCATTATCGACGTTGATGATTCATTCAAGAGACCAGGAACTATACCTTTTAGCTGGGAGATCCGACCCGGTGTACCTAAAACCCGAATGTCTCAACCCGGTAACACAACTCCTCTTCAGCCTCCAAAGAAACTCTCTCCTCTCCGTTTTAAACCATTGTCTCACTCTCAGCCGCTTCTCCCGCCGGCGTTATCTCCACCGTCTTCTTCTTTCATCTCCAATTCCAAAAGCCGTCCTTTATCTCCTCTCACTCCCCATTCCTTTTCTACAACCCCATCGAAGCTCAAGCCACCACGAACACCGTCGTCGCTTTCTGGATTTTACTCTCCGGGACCTTCTTTCCGATCATCGCCGCGTGCTTTCTCGGAACGGTGGCAGCTCCACCGCCCTAACCGGATTCGACCCGAATCCGAACCAGAACCAAGTTCCGATTTTTCTGTTGCCGGGTTCGGGTGTTTCCCGTCGCCTAAGTTTAGGTTGAGGAAAGTTAAGAGCGGTGGTAGTCGGAGAAAATCCGGGTCGAGATCGGAGAATGATTATTATTGCTCCGACATGGAGACGATGTCGCCGTGGACTGTTTCAAGCCGTAGATCGGTTTCTCCGAGATGGGAATCACCCAAGTCGTCGTTTTCTTCTCTCCGATTCTCGCCACGATTCGCCAACGAAGCTGAATGGGTTGGGTTTGGACTCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF688

Protein Analysis

232

Amino Acids

25.93

Weight (kDa)

10.93

Isoelectric Point (pI)

87.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF688 PF05097 8 - 191 3.1e-07 Protein of unknown function (DUF688)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016594)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21695 AT1G77400
fragaria_vesca FvH4_2g27560
malus_domestica MD15G1344600.v1.1
prunus_persica Prupe.1G492300_v2.0.a1
pyrus_communis pycom15g30780
rosa_chinensis RchiOBHm_Chr6g0296401
rosa_laevigata RLG00000011696
rosa_roxburghii Rroxscaffold_7G00171580 Rroxscaffold_7G00178530
rosa_rugosa Rorug06G0262000
rosa_samantha Rh6BG381700 Rh6DG374300
rosa_wichuraiana Rw6G032560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 498
AccII CGCG 1 cut(s) 358
AciI CCGC 5 cut(s) 176, 185, 356, 388, 498
AclWI GGATC 1 cut(s) 58
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 104
AfaI GTAC 1 cut(s) 78
AfiI CCNNNNNNNGG 2 cut(s) 453, 595
AgsI TTSAA 2 cut(s) 31, 585
AjnI CCWGG 1 cut(s) 37
AluBI AGCT 4 cut(s) 57, 286, 382, 671
AluI AGCT 4 cut(s) 57, 286, 382, 671
Alw26I GTCTC 4 cut(s) 28, 99, 168, 554
AlwI GGATC 1 cut(s) 58
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 379
AspS9I GGNCC 1 cut(s) 335
AsuC2I CCSGG 5 cut(s) 72, 102, 333, 448, 520
AsuHPI GGTGA 1 cut(s) 609
AvaII GGWCC 1 cut(s) 335
BalI TGGCCA 1 cut(s) 5
BbsI GAAGAC 1 cut(s) 198
BbvI GCAGC 1 cut(s) 391
BccI CCATC 2 cut(s) 286, 603
BceAI ACGGC 3 cut(s) 219, 556, 573
BciT130I CCWGG 1 cut(s) 39
BcnI CCSGG 5 cut(s) 72, 102, 333, 448, 520
BcoDI GTCTC 4 cut(s) 28, 99, 168, 554
BisI GCNGC 3 cut(s) 176, 356, 380
BlsI GCNGC 3 cut(s) 177, 357, 381
Bme1390I CCNGG 6 cut(s) 39, 72, 102, 333, 448, 520
Bme18I GGWCC 1 cut(s) 335
BmgT120I GGNCC 1 cut(s) 335
BmiI GGNNCC 1 cut(s) 336
BmrFI CCNGG 6 cut(s) 39, 72, 102, 333, 448, 520
BpiI GAAGAC 1 cut(s) 198
BpuEI CTTGAG 1 cut(s) 272
BpuMI CCSGG 5 cut(s) 72, 102, 333, 448, 520
BsaBI GATNNNNATC 1 cut(s) 613
BsaI GGTCTC 1 cut(s) 28
BsaJI CCNNGG 1 cut(s) 572
BsaWI WCCGGW 1 cut(s) 396
BsaXI ACNNNNNCTCC 2 cut(s) 551, 581
Bsc4I CCNNNNNNNGG 2 cut(s) 453, 595
Bse118I RCCGGY 1 cut(s) 187
Bse8I GATNNNNATC 1 cut(s) 613
BseBI CCWGG 1 cut(s) 39
BseDI CCNNGG 1 cut(s) 572
BseJI GATNNNNATC 1 cut(s) 613
BseLI CCNNNNNNNGG 2 cut(s) 453, 595
BseMII CTCAG 1 cut(s) 185
BseRI GAGGAG 3 cut(s) 105, 132, 237
BseXI GCAGC 1 cut(s) 391
BseYI CCCAGC 1 cut(s) 57
Bsh1236I CGCG 1 cut(s) 358
BshFI GGCC 1 cut(s) 5
BsiSI CCGG 7 cut(s) 72, 102, 188, 332, 397, 447, 519
BslFI GGGAC 1 cut(s) 348
BslI CCNNNNNNNGG 2 cut(s) 453, 595
BsmAI GTCTC 4 cut(s) 28, 99, 168, 554
BsmBI CGTCTC 1 cut(s) 554
BsmFI GGGAC 1 cut(s) 348
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 28
Bsp143I GATC 4 cut(s) 63, 347, 527, 593
BspACI CCGC 5 cut(s) 176, 185, 356, 388, 498
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 184
BspFNI CGCG 1 cut(s) 358
BspLI GGNNCC 1 cut(s) 336
BspPI GGATC 1 cut(s) 58
BspTNI GGTCTC 1 cut(s) 28
BsrBI CCGCTC 1 cut(s) 498
BsrFI RCCGGY 1 cut(s) 187
BssAI RCCGGY 1 cut(s) 187
BssECI CCNNGG 1 cut(s) 572
BssMI GATC 4 cut(s) 63, 347, 527, 593
Bst2UI CCWGG 1 cut(s) 39
Bst4CI ACNGT 4 cut(s) 204, 306, 375, 580
Bst6I CTCTTC 1 cut(s) 123
BstC8I GCNNGC 2 cut(s) 189, 360
BstDEI CTNAG 2 cut(s) 171, 471
BstDSI CCRYGG 1 cut(s) 572
BstFNI CGCG 1 cut(s) 358
BstKTI GATC 4 cut(s) 66, 350, 530, 596
BstMAI GTCTC 4 cut(s) 28, 99, 168, 554
BstMBI GATC 4 cut(s) 63, 347, 527, 593
BstMWI GCNNNNNNNGC 2 cut(s) 184, 668
BstNI CCWGG 1 cut(s) 39
BstSCI CCNGG 6 cut(s) 37, 70, 100, 331, 446, 518
BstUI CGCG 1 cut(s) 358
BstV1I GCAGC 1 cut(s) 391
BstV2I GAAGAC 1 cut(s) 198
BstX2I RGATCY 1 cut(s) 63
BstYI RGATCY 1 cut(s) 63
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 572
BtgZI GCGATG 1 cut(s) 336
Cac8I GCNNGC 2 cut(s) 189, 360
Cfr10I RCCGGY 1 cut(s) 187
Cfr13I GGNCC 1 cut(s) 335
Csp6I GTAC 1 cut(s) 77
CviAII CATG 1 cut(s) 556
CviQI GTAC 1 cut(s) 77
DdeI CTNAG 2 cut(s) 171, 471
DpnI GATC 4 cut(s) 65, 349, 529, 595
DpnII GATC 4 cut(s) 63, 347, 527, 593
DraI TTTAAA 1 cut(s) 154
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 123
EarI CTCTTC 1 cut(s) 123
Eco31I GGTCTC 1 cut(s) 28
Eco47I GGWCC 1 cut(s) 335
Eco57I CTGAAG 1 cut(s) 104
EcoO109I RGGNCCY 1 cut(s) 335
EcoRII CCWGG 1 cut(s) 37
Esp3I CGTCTC 1 cut(s) 554
FaeI CATG 1 cut(s) 559
FaiI YATR 2 cut(s) 47, 557
FalI AAGNNNNNCTT 2 cut(s) 223, 255
FaqI GGGAC 1 cut(s) 348
FatI CATG 1 cut(s) 555
FauI CCCGC 1 cut(s) 192
Fnu4HI GCNGC 3 cut(s) 176, 356, 380
Fsp4HI GCNGC 3 cut(s) 176, 356, 380
GluI GCNGC 3 cut(s) 176, 356, 380
GsaI CCCAGC 1 cut(s) 61
HaeIII GGCC 1 cut(s) 5
HapII CCGG 7 cut(s) 72, 102, 188, 332, 397, 447, 519
Hin1II CATG 1 cut(s) 559
HinfI GANTC 7 cut(s) 23, 400, 410, 614, 645, 657, 690
HpaII CCGG 7 cut(s) 72, 102, 188, 332, 397, 447, 519
HphI GGTGA 1 cut(s) 609
Hpy166II GTNNAC 2 cut(s) 77, 576
Hpy188III TCNNGA 3 cut(s) 31, 318, 525
Hpy8I GTNNAC 2 cut(s) 77, 576
Hpy99I CGWCG 5 cut(s) 17, 310, 313, 469, 631
HpyAV CCTTC 1 cut(s) 348
HpyCH4III ACNGT 4 cut(s) 204, 306, 375, 580
HpyCH4IV ACGT 1 cut(s) 15
HpyF10VI GCNNNNNNNGC 2 cut(s) 184, 668
HpyF3I CTNAG 2 cut(s) 171, 471
HpySE526I ACGT 1 cut(s) 15
Hsp92II CATG 1 cut(s) 559
KroI GCCGGC 1 cut(s) 187
KroNI GCCGGC 1 cut(s) 189
Kzo9I GATC 4 cut(s) 63, 347, 527, 593
LmnI GCTCC 2 cut(s) 387, 554
Lsp1109I GCAGC 1 cut(s) 391
MaeII ACGT 1 cut(s) 15
MaeIII GTNAC 1 cut(s) 104
MalI GATC 4 cut(s) 65, 349, 529, 595
MbiI CCGCTC 1 cut(s) 498
MboI GATC 4 cut(s) 63, 347, 527, 593
MboII GAAGA 4 cut(s) 110, 198, 201, 627
MflI RGATCY 1 cut(s) 63
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 223
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 684
MmeI TCCRAC 3 cut(s) 91, 488, 576
MnlI CCTC 5 cut(s) 126, 135, 153, 258, 477
Mox20I TGGCCA 1 cut(s) 5
MreI CGCCGGCG 1 cut(s) 187
MroNI GCCGGC 1 cut(s) 187
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 153, 492
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 7 cut(s) 72, 102, 188, 332, 397, 447, 519
MspR9I CCNGG 6 cut(s) 39, 72, 102, 333, 448, 520
MvaI CCWGG 1 cut(s) 39
MvnI CGCG 1 cut(s) 358
MwoI GCNNNNNNNGC 2 cut(s) 184, 668
NaeI GCCGGC 1 cut(s) 189
NciI CCSGG 5 cut(s) 72, 102, 333, 448, 520
NdeII GATC 4 cut(s) 63, 347, 527, 593
NgoMIV GCCGGC 1 cut(s) 187
NlaIII CATG 1 cut(s) 559
NlaIV GGNNCC 1 cut(s) 336
PcsI WCGNNNNNNNCGW 2 cut(s) 569, 602
PdiI GCCGGC 1 cut(s) 189
PfeI GAWTC 6 cut(s) 23, 400, 410, 614, 645, 657
PflFI GACNNNGTC 1 cut(s) 565
PfoI TCCNGGA 1 cut(s) 331
PkrI GCNGC 3 cut(s) 177, 357, 381
PleI GAGTC 1 cut(s) 684
PpsI GAGTC 1 cut(s) 684
PpuMI RGGWCCY 1 cut(s) 335
Psp5II RGGWCCY 1 cut(s) 335
Psp6I CCWGG 1 cut(s) 37
PspFI CCCAGC 1 cut(s) 57
PspGI CCWGG 1 cut(s) 37
PspN4I GGNNCC 1 cut(s) 336
PspPI GGNCC 1 cut(s) 335
PspPPI RGGWCCY 1 cut(s) 335
PsuI RGATCY 1 cut(s) 63
PsyI GACNNNGTC 1 cut(s) 565
RsaI GTAC 1 cut(s) 78
RsaNI GTAC 1 cut(s) 77
SaqAI TTAA 2 cut(s) 153, 492
SatI GCNGC 3 cut(s) 176, 356, 380
Sau3AI GATC 4 cut(s) 63, 347, 527, 593
Sau96I GGNCC 1 cut(s) 335
SchI GAGTC 1 cut(s) 684
ScrFI CCNGG 6 cut(s) 39, 72, 102, 333, 448, 520
SetI ASST 9 cut(s) 18, 52, 59, 82, 288, 340, 384, 482, 673
SgrAI CRCCGGYG 1 cut(s) 187
SinI GGWCC 1 cut(s) 335
SmlI CTYRAG 1 cut(s) 287
SmoI CTYRAG 1 cut(s) 287
Sse9I AATT 1 cut(s) 223
SsiI CCGC 5 cut(s) 176, 185, 356, 388, 498
StyD4I CCNGG 6 cut(s) 37, 70, 100, 331, 446, 518
TaaI ACNGT 4 cut(s) 204, 306, 375, 580
TaiI ACGT 1 cut(s) 18
TaqI TCGA 4 cut(s) 12, 281, 403, 524
TasI AATT 1 cut(s) 223
TauI GCSGC 2 cut(s) 178, 358
TfiI GAWTC 6 cut(s) 23, 400, 410, 614, 645, 657
Tru1I TTAA 2 cut(s) 153, 492
Tru9I TTAA 2 cut(s) 153, 492
TseI GCWGC 1 cut(s) 379
TspDTI ATGAA 2 cut(s) 15, 205
TspGWI ACGGA 1 cut(s) 137
Tth111I GACNNNGTC 1 cut(s) 565
VpaK11BI GGWCC 1 cut(s) 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.