Rw6G032560

BEST Arabidopsis thaliana protein match is hydroxyproline-rich glycoprotein family protein (TAIR AT1G21695.1)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0016594
Physical Location & Seq
Reverse (-)
56726791 .. 56727887
1097 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G032560.1

Sequence Viewer

Length: 570 bp
ATGGCGATTGATGAGTATGATTTTACAAAACCAGGAGCTATCCCATTTCAATGGGAAATACGCCCCGGCGTACCCAAAGTCCAACACCAAACACCACCACCACCACCGTCACCGCCGCCACAAACTTGTGATTACGATTCTAGTCCTCTCAAACCGCCACCAGCCGGGTTCGATTTCGTGCCTCTAGCCGAGCCACGGACCCGGTCGTTTCGTTCTGGTTGGGCAACCCGGTCGCGTTCAGAGCGGTGGCGGTTTGAGCAGCCCAATATGCTGGCCCGGCGACCTGAGATTGTTTCGTCACCGGGGTGCTTCTTGTCTCCTCTGCTAAGGAGAAAGCTGAGCGGCGGGAAAAAGGGGAAGAGTGGTGGTGCAAGAACCGTACCCGAGCCCGAACCCGAACCCGACTGCAGTTCTGACCTTGAAACACTGGCCCGGTGGTCGCTTTCTTCCCGGAAGTCGCTGCTTTCGCCGTTCCGTGACTCACCGACGTCGATGTCGTCGCACTCGTCCTACCAGTCGTCCCCGCGACCCGTAAGTGACGCAGAGTGGGCCGGGTTCGGACTCTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF688

Protein Analysis

189

Amino Acids

20.98

Weight (kDa)

9.33

Isoelectric Point (pI)

95.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016594)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21695 AT1G77400
fragaria_vesca FvH4_2g27560
malus_domestica MD15G1344600.v1.1
prunus_persica Prupe.1G492300_v2.0.a1
pyrus_communis pycom15g30780
rosa_chinensis RchiOBHm_Chr6g0296401
rosa_laevigata RLG00000011696
rosa_roxburghii Rroxscaffold_7G00171580 Rroxscaffold_7G00178530
rosa_rugosa Rorug06G0262000
rosa_samantha Rh6BG381700 Rh6DG374300
rosa_wichuraiana Rw6G032560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 493
AatII GACGTC 1 cut(s) 491
AccBSI CCGCTC 2 cut(s) 244, 342
AccII CGCG 2 cut(s) 235, 526
AciI CCGC 8 cut(s) 113, 116, 155, 244, 250, 342, 345, 524
AcyI GRCGYC 1 cut(s) 488
AfaI GTAC 2 cut(s) 72, 381
AfiI CCNNNNNNNGG 2 cut(s) 164, 195
AgsI TTSAA 2 cut(s) 50, 422
AjnI CCWGG 1 cut(s) 31
AleI CACNNNNGTG 1 cut(s) 304
AluBI AGCT 2 cut(s) 38, 337
AluI AGCT 2 cut(s) 38, 337
Alw26I GTCTC 1 cut(s) 321
Ama87I CYCGRG 1 cut(s) 383
AoxI GGCC 3 cut(s) 273, 429, 549
ApeKI GCWGC 2 cut(s) 259, 460
AspS9I GGNCC 4 cut(s) 198, 274, 430, 549
AsuC2I CCSGG 9 cut(s) 66, 166, 202, 229, 277, 303, 433, 451, 553
AsuHPI GGTGA 3 cut(s) 102, 291, 474
AvaI CYCGRG 1 cut(s) 383
AvaII GGWCC 1 cut(s) 198
BanII GRGCYC 1 cut(s) 390
BbvI GCAGC 2 cut(s) 271, 447
BceAI ACGGC 1 cut(s) 454
BcgI CGANNNNNNTGC 2 cut(s) 213, 247
BciT130I CCWGG 1 cut(s) 33
BcnI CCSGG 9 cut(s) 66, 166, 202, 229, 277, 303, 433, 451, 553
BcoDI GTCTC 1 cut(s) 321
BfaI CTAG 2 cut(s) 141, 185
BfmI CTRYAG 1 cut(s) 406
BisI GCNGC 4 cut(s) 116, 260, 343, 461
BlpI GCTNAGC 1 cut(s) 338
BlsI GCNGC 4 cut(s) 117, 261, 344, 462
Bme18I GGWCC 1 cut(s) 198
BmeT110I CYCGRG 1 cut(s) 383
BmgT120I GGNCC 4 cut(s) 198, 274, 430, 549
BmiI GGNNCC 1 cut(s) 200
Bpu10I CCTNAGC 1 cut(s) 326
Bpu1102I GCTNAGC 1 cut(s) 338
BpuMI CCSGG 9 cut(s) 66, 166, 202, 229, 277, 303, 433, 451, 553
BsaHI GRCGYC 1 cut(s) 488
BsaJI CCNNGG 3 cut(s) 64, 194, 302
Bsc4I CCNNNNNNNGG 2 cut(s) 164, 195
Bse1I ACTGG 2 cut(s) 432, 514
BseBI CCWGG 1 cut(s) 33
BseDI CCNNGG 3 cut(s) 64, 194, 302
BseLI CCNNNNNNNGG 2 cut(s) 164, 195
BseMII CTCAG 2 cut(s) 276, 329
BseNI ACTGG 2 cut(s) 432, 514
BseRI GAGGAG 1 cut(s) 309
BseXI GCAGC 2 cut(s) 271, 447
Bsh1236I CGCG 2 cut(s) 235, 526
Bsh1285I CGRYCG 2 cut(s) 206, 233
BshFI GGCC 3 cut(s) 275, 431, 551
BsiEI CGRYCG 2 cut(s) 206, 233
BsiHKCI CYCGRG 1 cut(s) 383
BsiSI CCGG 9 cut(s) 66, 165, 202, 229, 277, 302, 433, 451, 552
BslFI GGGAC 1 cut(s) 505
BslI CCNNNNNNNGG 2 cut(s) 164, 195
BsmAI GTCTC 1 cut(s) 321
BsmFI GGGAC 1 cut(s) 505
BsnI GGCC 3 cut(s) 275, 431, 551
BsoBI CYCGRG 1 cut(s) 383
Bsp1286I GDGCHC 1 cut(s) 390
Bsp1720I GCTNAGC 1 cut(s) 338
BspACI CCGC 8 cut(s) 113, 116, 155, 244, 250, 342, 345, 524
BspANI GGCC 3 cut(s) 275, 431, 551
BspCNI CTCAG 2 cut(s) 277, 330
BspFNI CGCG 2 cut(s) 235, 526
BspLI GGNNCC 1 cut(s) 200
BspMAI CTGCAG 1 cut(s) 410
BsrBI CCGCTC 2 cut(s) 244, 342
BsrI ACTGG 2 cut(s) 432, 514
BssECI CCNNGG 3 cut(s) 64, 194, 302
BssNI GRCGYC 1 cut(s) 488
Bst2UI CCWGG 1 cut(s) 33
Bst4CI ACNGT 2 cut(s) 108, 379
Bst6I CTCTTC 1 cut(s) 353
BstACI GRCGYC 1 cut(s) 488
BstC8I GCNNGC 1 cut(s) 273
BstDEI CTNAG 3 cut(s) 285, 326, 338
BstDSI CCRYGG 1 cut(s) 194
BstFNI CGCG 2 cut(s) 235, 526
BstMAI GTCTC 1 cut(s) 321
BstMCI CGRYCG 2 cut(s) 206, 233
BstMWI GCNNNNNNNGC 6 cut(s) 241, 256, 268, 277, 466, 548
BstNI CCWGG 1 cut(s) 33
BstSFI CTRYAG 1 cut(s) 406
BstUI CGCG 2 cut(s) 235, 526
BstV1I GCAGC 2 cut(s) 271, 447
BstXI CCANNNNNNTGG 2 cut(s) 51, 271
BsuRI GGCC 3 cut(s) 275, 431, 551
BtgI CCRYGG 1 cut(s) 194
BtsIMutI CAGTG 1 cut(s) 425
Cac8I GCNNGC 1 cut(s) 273
Cfr13I GGNCC 4 cut(s) 198, 274, 430, 549
CseI GACGC 1 cut(s) 548
Csp6I GTAC 2 cut(s) 71, 380
CviQI GTAC 2 cut(s) 71, 380
DdeI CTNAG 3 cut(s) 285, 326, 338
DrdI GACNNNNNNGTC 1 cut(s) 493
DseDI GACNNNNNNGTC 1 cut(s) 493
Eam1104I CTCTTC 1 cut(s) 353
EarI CTCTTC 1 cut(s) 353
Eco24I GRGCYC 1 cut(s) 390
Eco47I GGWCC 1 cut(s) 198
Eco88I CYCGRG 1 cut(s) 383
EcoRII CCWGG 1 cut(s) 31
EcoT38I GRGCYC 1 cut(s) 390
FaiI YATR 2 cut(s) 18, 269
FaqI GGGAC 1 cut(s) 505
FauI CCCGC 2 cut(s) 338, 531
Fnu4HI GCNGC 4 cut(s) 116, 260, 343, 461
FriOI GRGCYC 1 cut(s) 390
Fsp4HI GCNGC 4 cut(s) 116, 260, 343, 461
FspBI CTAG 2 cut(s) 141, 185
GluI GCNGC 4 cut(s) 116, 260, 343, 461
HaeIII GGCC 3 cut(s) 275, 431, 551
HapII CCGG 9 cut(s) 66, 165, 202, 229, 277, 302, 433, 451, 552
HgaI GACGC 1 cut(s) 548
Hin1I GRCGYC 1 cut(s) 488
HinfI GANTC 3 cut(s) 137, 479, 561
HpaII CCGG 9 cut(s) 66, 165, 202, 229, 277, 302, 433, 451, 552
HphI GGTGA 3 cut(s) 102, 291, 474
Hpy188I TCNGA 3 cut(s) 241, 415, 560
Hpy99I CGWCG 3 cut(s) 490, 493, 502
HpyCH4III ACNGT 2 cut(s) 108, 379
HpyCH4IV ACGT 1 cut(s) 488
HpyCH4V TGCA 2 cut(s) 371, 408
HpyF10VI GCNNNNNNNGC 6 cut(s) 241, 256, 268, 277, 466, 548
HpyF3I CTNAG 3 cut(s) 285, 326, 338
HpySE526I ACGT 1 cut(s) 488
Hsp92I GRCGYC 1 cut(s) 488
LmnI GCTCC 1 cut(s) 35
Lsp1109I GCAGC 2 cut(s) 271, 447
MaeI CTAG 2 cut(s) 141, 185
MaeII ACGT 1 cut(s) 488
MaeIII GTNAC 4 cut(s) 108, 297, 476, 536
MbiI CCGCTC 2 cut(s) 244, 342
MboII GAAGA 2 cut(s) 370, 438
MhlI GDGCHC 1 cut(s) 390
MlyI GAGTC 2 cut(s) 473, 555
MmeI TCCRAC 1 cut(s) 106
MnlI CCTC 3 cut(s) 156, 192, 330
MslI CAYNNNNRTG 2 cut(s) 49, 304
MspI CCGG 9 cut(s) 66, 165, 202, 229, 277, 302, 433, 451, 552
MvaI CCWGG 1 cut(s) 33
MvnI CGCG 2 cut(s) 235, 526
MwoI GCNNNNNNNGC 6 cut(s) 241, 256, 268, 277, 466, 548
NciI CCSGG 9 cut(s) 66, 166, 202, 229, 277, 303, 433, 451, 553
NlaIV GGNNCC 1 cut(s) 200
NmeAIII GCCGAG 1 cut(s) 214
NmuCI GTSAC 4 cut(s) 108, 297, 476, 536
OliI CACNNNNGTG 1 cut(s) 304
PcsI WCGNNNNNNNCGW 2 cut(s) 494, 503
PfeI GAWTC 1 cut(s) 137
PflFI GACNNNGTC 1 cut(s) 202
PfoI TCCNGGA 1 cut(s) 449
PkrI GCNGC 4 cut(s) 117, 261, 344, 462
PleI GAGTC 2 cut(s) 473, 555
PpsI GAGTC 2 cut(s) 473, 555
Psp6I CCWGG 1 cut(s) 31
PspGI CCWGG 1 cut(s) 31
PspN4I GGNNCC 1 cut(s) 200
PspPI GGNCC 4 cut(s) 198, 274, 430, 549
PstI CTGCAG 1 cut(s) 410
PsyI GACNNNGTC 1 cut(s) 202
RsaI GTAC 2 cut(s) 72, 381
RsaNI GTAC 2 cut(s) 71, 380
RseI CAYNNNNRTG 2 cut(s) 49, 304
SatI GCNGC 4 cut(s) 116, 260, 343, 461
Sau96I GGNCC 4 cut(s) 198, 274, 430, 549
SchI GAGTC 2 cut(s) 473, 555
SduI GDGCHC 1 cut(s) 390
SetI ASST 5 cut(s) 40, 286, 339, 420, 491
SfcI CTRYAG 1 cut(s) 406
SinI GGWCC 1 cut(s) 198
SmiMI CAYNNNNRTG 2 cut(s) 49, 304
SsiI CCGC 8 cut(s) 113, 116, 155, 244, 250, 342, 345, 524
SspMI CTAG 2 cut(s) 141, 185
TaaI ACNGT 2 cut(s) 108, 379
TaiI ACGT 1 cut(s) 491
TaqI TCGA 2 cut(s) 171, 491
TauI GCSGC 2 cut(s) 118, 345
TfiI GAWTC 1 cut(s) 137
TscAI CASTG 1 cut(s) 432
TseFI GTSAC 4 cut(s) 108, 297, 476, 536
TseI GCWGC 2 cut(s) 259, 460
Tsp45I GTSAC 4 cut(s) 108, 297, 476, 536
TspGWI ACGGA 2 cut(s) 211, 464
TspRI CASTG 1 cut(s) 432
Tth111I GACNNNGTC 1 cut(s) 202
VpaK11BI GGWCC 1 cut(s) 198
XspI CTAG 2 cut(s) 141, 185
ZraI GACGTC 1 cut(s) 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.