RchiOBHm_Chr6g0296401

BEST Arabidopsis thaliana protein match is hydroxyproline-rich glycoprotein family protein (TAIR AT1G21695.1)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0016594
Physical Location & Seq
Reverse (-)
58169560 .. 58170483
924 bp
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UTR
Exon/CDS
Intron
PRQ26606

Sequence Viewer

Length: 573 bp
ATGGCGATTGATGAGTACGATTTTACAAAACCAGGAGCTATCCCATTTCAATGGGAAATACGCCCCGGCGTACCCAAAGTCCAACACCAAACACAACCACCACCACCACCGTCACCGCCACCACAAACTTGTGATTACAATCTTAGTCCTCTCAAACCGCCACCAGCCGGGTTCGATTTCGTGCCTCTAGCCGAGCCGCGGACCTGGTCGTTTCGTTCGGGTTCTGCAACCCGGTCGCGTTCAGAGCGGTGGCGATTTGAGCAGCCCAATATGCTGGCCCGGCGACCTGAGATTGTTTCGTCACCGGGGTGCTTCTTGTCTCCTCTGCTAAGGAGAAAGCTGAGCGGCGGGAAAAAGGGGAAGAGTGGTGGTGCAAGAACAGTACCCGAACCCGAACCCGAACCCGACTGCAGTTCTGACCTTGAAACACTGGCCCGGTGGTCGCTTTCTTCCCGGAAATCGCTGCTTTCGCCGTTCCGTGACTCACCGACGTCGATGTCGTCGTACTCGTCCTACCAGTCGTCCCCGCGACCCGTAAGTGACGCAGAGTGGGCCGGGTTCGGACTGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF688

Protein Analysis

190

Amino Acids

21.09

Weight (kDa)

9.3

Isoelectric Point (pI)

89.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016594)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21695 AT1G77400
fragaria_vesca FvH4_2g27560
malus_domestica MD15G1344600.v1.1
prunus_persica Prupe.1G492300_v2.0.a1
pyrus_communis pycom15g30780
rosa_chinensis RchiOBHm_Chr6g0296401
rosa_laevigata RLG00000011696
rosa_roxburghii Rroxscaffold_7G00171580 Rroxscaffold_7G00178530
rosa_rugosa Rorug06G0262000
rosa_samantha Rh6BG381700 Rh6DG374300
rosa_wichuraiana Rw6G032560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 496
AatII GACGTC 1 cut(s) 494
AccBSI CCGCTC 2 cut(s) 247, 345
AccII CGCG 3 cut(s) 199, 238, 529
AciI CCGC 8 cut(s) 116, 158, 197, 199, 247, 345, 348, 527
AcyI GRCGYC 1 cut(s) 491
AfaI GTAC 4 cut(s) 17, 72, 384, 506
AfiI CCNNNNNNNGG 2 cut(s) 167, 198
AgsI TTSAA 2 cut(s) 50, 425
AjnI CCWGG 2 cut(s) 31, 203
AleI CACNNNNGTG 1 cut(s) 307
AluBI AGCT 2 cut(s) 38, 340
AluI AGCT 2 cut(s) 38, 340
Alw26I GTCTC 1 cut(s) 324
AoxI GGCC 3 cut(s) 276, 432, 552
ApeKI GCWGC 2 cut(s) 262, 463
AspS9I GGNCC 4 cut(s) 201, 277, 433, 552
AsuC2I CCSGG 8 cut(s) 66, 169, 232, 280, 306, 436, 454, 556
AsuHPI GGTGA 3 cut(s) 105, 294, 477
AvaII GGWCC 1 cut(s) 201
BbvI GCAGC 2 cut(s) 274, 450
BceAI ACGGC 1 cut(s) 457
BcgI CGANNNNNNTGC 2 cut(s) 216, 250
BciT130I CCWGG 2 cut(s) 33, 205
BcnI CCSGG 8 cut(s) 66, 169, 232, 280, 306, 436, 454, 556
BcoDI GTCTC 1 cut(s) 324
BfaI CTAG 1 cut(s) 188
BfmI CTRYAG 1 cut(s) 409
BisI GCNGC 4 cut(s) 197, 263, 346, 464
BlpI GCTNAGC 1 cut(s) 341
BlsI GCNGC 4 cut(s) 198, 264, 347, 465
Bme18I GGWCC 1 cut(s) 201
BmgT120I GGNCC 4 cut(s) 201, 277, 433, 552
Bpu10I CCTNAGC 1 cut(s) 329
Bpu1102I GCTNAGC 1 cut(s) 341
BpuMI CCSGG 8 cut(s) 66, 169, 232, 280, 306, 436, 454, 556
BsaBI GATNNNNATC 1 cut(s) 138
BsaHI GRCGYC 1 cut(s) 491
BsaJI CCNNGG 3 cut(s) 64, 197, 305
Bsc4I CCNNNNNNNGG 2 cut(s) 167, 198
Bse1I ACTGG 2 cut(s) 435, 517
Bse8I GATNNNNATC 1 cut(s) 138
BseBI CCWGG 2 cut(s) 33, 205
BseDI CCNNGG 3 cut(s) 64, 197, 305
BseJI GATNNNNATC 1 cut(s) 138
BseLI CCNNNNNNNGG 2 cut(s) 167, 198
BseMII CTCAG 2 cut(s) 279, 332
BseNI ACTGG 2 cut(s) 435, 517
BseRI GAGGAG 1 cut(s) 312
BseXI GCAGC 2 cut(s) 274, 450
Bsh1236I CGCG 3 cut(s) 199, 238, 529
Bsh1285I CGRYCG 1 cut(s) 236
BshFI GGCC 3 cut(s) 278, 434, 554
BsiEI CGRYCG 1 cut(s) 236
BsiSI CCGG 8 cut(s) 66, 168, 232, 280, 305, 436, 454, 555
BslFI GGGAC 1 cut(s) 508
BslI CCNNNNNNNGG 2 cut(s) 167, 198
BsmAI GTCTC 1 cut(s) 324
BsmFI GGGAC 1 cut(s) 508
BsnI GGCC 3 cut(s) 278, 434, 554
Bsp1720I GCTNAGC 1 cut(s) 341
BspACI CCGC 8 cut(s) 116, 158, 197, 199, 247, 345, 348, 527
BspANI GGCC 3 cut(s) 278, 434, 554
BspCNI CTCAG 2 cut(s) 280, 333
BspFNI CGCG 3 cut(s) 199, 238, 529
BspMAI CTGCAG 1 cut(s) 413
BsrBI CCGCTC 2 cut(s) 247, 345
BsrI ACTGG 2 cut(s) 435, 517
BssECI CCNNGG 3 cut(s) 64, 197, 305
BssNI GRCGYC 1 cut(s) 491
Bst2UI CCWGG 2 cut(s) 33, 205
Bst4CI ACNGT 3 cut(s) 111, 382, 567
Bst6I CTCTTC 1 cut(s) 356
BstACI GRCGYC 1 cut(s) 491
BstC8I GCNNGC 1 cut(s) 276
BstDEI CTNAG 4 cut(s) 143, 288, 329, 341
BstDSI CCRYGG 1 cut(s) 197
BstFNI CGCG 3 cut(s) 199, 238, 529
BstMAI GTCTC 1 cut(s) 324
BstMCI CGRYCG 1 cut(s) 236
BstMWI GCNNNNNNNGC 6 cut(s) 244, 259, 271, 280, 469, 551
BstNI CCWGG 2 cut(s) 33, 205
BstSFI CTRYAG 1 cut(s) 409
BstUI CGCG 3 cut(s) 199, 238, 529
BstV1I GCAGC 2 cut(s) 274, 450
BstXI CCANNNNNNTGG 2 cut(s) 51, 274
BsuRI GGCC 3 cut(s) 278, 434, 554
BtgI CCRYGG 1 cut(s) 197
BtsIMutI CAGTG 1 cut(s) 428
Cac8I GCNNGC 1 cut(s) 276
Cfr13I GGNCC 4 cut(s) 201, 277, 433, 552
Cfr42I CCGCGG 1 cut(s) 200
CseI GACGC 1 cut(s) 551
CsiI ACCWGGT 1 cut(s) 203
Csp6I GTAC 4 cut(s) 16, 71, 383, 505
CviJI RGCY 9 cut(s) 38, 167, 191, 196, 265, 278, 340, 434, 554
CviKI_1 RGCY 9 cut(s) 38, 167, 191, 196, 265, 278, 340, 434, 554
CviQI GTAC 4 cut(s) 16, 71, 383, 505
DdeI CTNAG 4 cut(s) 143, 288, 329, 341
DrdI GACNNNNNNGTC 1 cut(s) 496
DseDI GACNNNNNNGTC 1 cut(s) 496
Eam1104I CTCTTC 1 cut(s) 356
EarI CTCTTC 1 cut(s) 356
Eco47I GGWCC 1 cut(s) 201
EcoRII CCWGG 2 cut(s) 31, 203
FaiI YATR 1 cut(s) 272
FaqI GGGAC 1 cut(s) 508
FauI CCCGC 2 cut(s) 341, 534
Fnu4HI GCNGC 4 cut(s) 197, 263, 346, 464
Fsp4HI GCNGC 4 cut(s) 197, 263, 346, 464
FspBI CTAG 1 cut(s) 188
GluI GCNGC 4 cut(s) 197, 263, 346, 464
HaeIII GGCC 3 cut(s) 278, 434, 554
HapII CCGG 8 cut(s) 66, 168, 232, 280, 305, 436, 454, 555
HgaI GACGC 1 cut(s) 551
Hin1I GRCGYC 1 cut(s) 491
HinfI GANTC 1 cut(s) 482
HpaII CCGG 8 cut(s) 66, 168, 232, 280, 305, 436, 454, 555
HphI GGTGA 3 cut(s) 105, 294, 477
Hpy188I TCNGA 3 cut(s) 244, 418, 563
Hpy99I CGWCG 3 cut(s) 493, 496, 505
HpyCH4III ACNGT 3 cut(s) 111, 382, 567
HpyCH4IV ACGT 1 cut(s) 491
HpyCH4V TGCA 3 cut(s) 227, 374, 411
HpyF10VI GCNNNNNNNGC 6 cut(s) 244, 259, 271, 280, 469, 551
HpyF3I CTNAG 4 cut(s) 143, 288, 329, 341
HpySE526I ACGT 1 cut(s) 491
Hsp92I GRCGYC 1 cut(s) 491
KspI CCGCGG 1 cut(s) 200
LmnI GCTCC 1 cut(s) 35
Lsp1109I GCAGC 2 cut(s) 274, 450
MabI ACCWGGT 1 cut(s) 203
MaeI CTAG 1 cut(s) 188
MaeII ACGT 1 cut(s) 491
MaeIII GTNAC 4 cut(s) 111, 300, 479, 539
MbiI CCGCTC 2 cut(s) 247, 345
MboII GAAGA 2 cut(s) 373, 441
MlyI GAGTC 1 cut(s) 476
MmeI TCCRAC 1 cut(s) 106
MnlI CCTC 3 cut(s) 159, 195, 333
MslI CAYNNNNRTG 2 cut(s) 49, 307
MspA1I CMGCKG 1 cut(s) 199
MspI CCGG 8 cut(s) 66, 168, 232, 280, 305, 436, 454, 555
MvaI CCWGG 2 cut(s) 33, 205
MvnI CGCG 3 cut(s) 199, 238, 529
MwoI GCNNNNNNNGC 6 cut(s) 244, 259, 271, 280, 469, 551
NciI CCSGG 8 cut(s) 66, 169, 232, 280, 306, 436, 454, 556
NmeAIII GCCGAG 1 cut(s) 217
NmuCI GTSAC 4 cut(s) 111, 300, 479, 539
OliI CACNNNNGTG 1 cut(s) 307
PcsI WCGNNNNNNNCGW 3 cut(s) 497, 500, 506
PflFI GACNNNGTC 1 cut(s) 205
PfoI TCCNGGA 1 cut(s) 452
PkrI GCNGC 4 cut(s) 198, 264, 347, 465
PleI GAGTC 1 cut(s) 476
PpsI GAGTC 1 cut(s) 476
Psp6I CCWGG 2 cut(s) 31, 203
PspGI CCWGG 2 cut(s) 31, 203
PspPI GGNCC 4 cut(s) 201, 277, 433, 552
PstI CTGCAG 1 cut(s) 413
PsyI GACNNNGTC 1 cut(s) 205
RsaI GTAC 4 cut(s) 17, 72, 384, 506
RsaNI GTAC 4 cut(s) 16, 71, 383, 505
RseI CAYNNNNRTG 2 cut(s) 49, 307
SacII CCGCGG 1 cut(s) 200
SatI GCNGC 4 cut(s) 197, 263, 346, 464
Sau96I GGNCC 4 cut(s) 201, 277, 433, 552
SchI GAGTC 1 cut(s) 476
SetI ASST 6 cut(s) 40, 206, 289, 342, 423, 494
SexAI ACCWGGT 1 cut(s) 203
SfcI CTRYAG 1 cut(s) 409
Sfr303I CCGCGG 1 cut(s) 200
SgrBI CCGCGG 1 cut(s) 200
SinI GGWCC 1 cut(s) 201
SmiMI CAYNNNNRTG 2 cut(s) 49, 307
SsiI CCGC 8 cut(s) 116, 158, 197, 199, 247, 345, 348, 527
SspMI CTAG 1 cut(s) 188
TaaI ACNGT 3 cut(s) 111, 382, 567
TaiI ACGT 1 cut(s) 494
TaqI TCGA 2 cut(s) 174, 494
TauI GCSGC 2 cut(s) 199, 348
TscAI CASTG 1 cut(s) 435
TseFI GTSAC 4 cut(s) 111, 300, 479, 539
TseI GCWGC 2 cut(s) 262, 463
Tsp45I GTSAC 4 cut(s) 111, 300, 479, 539
TspGWI ACGGA 1 cut(s) 467
TspRI CASTG 1 cut(s) 435
Tth111I GACNNNGTC 1 cut(s) 205
VpaK11BI GGWCC 1 cut(s) 201
XspI CTAG 1 cut(s) 188
ZraI GACGTC 1 cut(s) 492
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.