Rorug06G0262000

BEST Arabidopsis thaliana protein match is hydroxyproline-rich glycoprotein family protein (TAIR AT1G21695.1)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0016594
Physical Location & Seq
Reverse (-)
40806147 .. 40809403
3257 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0262000.1

Sequence Viewer

Length: 2169 bp
ATGAAGGTAAGGGAGTCTAAAGCGGAAAAGCTGGAGTCTTGGACGAGGATCGAAGCTGTACCGGAGTTGAATGGAGTCGCCGTCGCTCAGCTCGTCCCAGGTTTTCTCGTGGTTTACATATATAAAGCTCCAAAATGCCCTAATCGATTGCGAATTGGGGGTGTTAACGAGCCTACTACGCGCACGTGTCACGCCCCAGCTTTCTTCTTTACTATTACCTGGGCCCAACTGGGCCGACTCGGCCACCGCTTCTTTTTCTCGCTTGGGCCTGAAGCCCAGGCCCATTGTTTTGTCAATGAAAGCGTTTCTCCACTCTCTGGAGCTGAAGCCATGGCGACTCTGATACGGCGGCGTTTGCTCTGCACGAGCGCCAAGGCGGGGAAGAAATGGGCGGTGAAGGAGGTGACGAAGGCGAATTTTTCGGAGGCGGTGGAGGAGTTCAAGGACGACCTGGCCGGGTCGGACTTTGTGGCCGTGTCGCTGCAGAAAACGGGGTCGTTTTCGGCGGGATGGCACCGCGCGCTGCCGTTCGACACGAACGACACGGCGTATTTGAAGGCGAAGTACGCGGCGGAGCGTTTCCAGGTGCTTCAGTTCGCCGCCTGCCCTTTCAGTCTTAGAGCCTCCAAGCTCACCGCTCACCCATATAACTTTATATTGTTCCCTAGAGATGAACTGAAGGTGGGGATGCCGTCTTATAGTTTTTCGGTTCAAACATCACATTTGACACACATGGCTCAAGAGGGTTTTGATTTTAATGCCTGCATATATGATGGTATATCGTACTTGTCTAAAGCACAAGAATCTGCAGCTAAAGTGCGGATAGGGAATCCGACGCCCGGAAACTATGTAGTAGATTCTTCCTTAACGCATACTGTTGCTGATACGATTTTTATTGAGAGAATTAAATCACGAGTTAAGCATTGGAAAAATGCGTGCAAGAAATCAGGCTCAAGGACAGATGATGCTCTGCTGAGTTCCTTGAGAAAACTTGTGATGGGGACTGAAATTTATGGATCAAGACCATGCATGAATATAGATGTTTGCAGCGAGCGTCAAGTACAGCTTGCACTGGAGATGCTAAAAGAGTTCAGTGATGAACTTGTTCCTTTAATAATCCCAGCAAATGGTGGAGGTACTCAGTCTGTTCGAGTTGTTTTGACAAGTTCTAAAGAGGACAAGGACTTGTTTGAGAGAGAGCTTCAAAACGTTGTGGAGGAACAAAACAAGAGGGTTCGTGGATTTCGAGAGGTGATCGATTTGATTTCTGCTTCACAGAAACCTGTTGTCTCCCACAATTCCCTTAATGATTTCACGTTTATTCATTCAAAATTTCTCTCTCCCCTGCCGGCTAACGTAGATGAGTTCACAGGCTCCTTGAGCTTGGTTTTTCCCCACATACTTGATATCAACCATCTGATGAAGAATATTGGCCCTTTAAGGAAGGTGACCAATATACCTGCAGCTATTTCCTACCTGAATAATCATTACTTTGCACCTATTGATTTGGAAACTTTACCTCAAGAAAATGAAGGGAAAATTCATAGGCATAATGTCGTGAAGATGTGTTATTTGTTTGCGAAGCTCAGCACCATTCTGAAAATTCCGGAGAATGCTAAGCTATCTAACAATCACCTATTAGCTCCAGCCCTTGACGTGTACACTAACATATCCAATCCCTTCTCTGACATTCCCCAGGAATCAATCAATGAGGATATCAGAATCTGGAGAAATAATATGAGAAAAATCAGCTGTGATAATTTGATATTCTTATGGGGATTTAGAAGTGGGTTGACCGCTGGAATGCTGAAGAGCATGTTGCACAAGTCACATGATGTTTTCTCTGAAGACTTTGATGTTCGGTTAGTAGATAAGAGCTGTGCCATTGTTGTTTTCTGGCAACCTGGTTTATCTGGAACTTTCCTTGATGTTGTGAGTGACGAAGCCATCTGTGGATCATTGAGGGAGATGGTCTCAGAGGGCCTAAGAGCAACGAGTTATAGAACTTACAAGAGAGTCTGTAAGTTGGGCTTATGGGAGGCAGATTTAGCAGAGTCCTTGGACAAAGCTTTAGAAGATCCAGACTACAGTATGGAAGCTGATTCAACAACAAACGGCAGAGAAATTCTTTGGTCTACTGACTCTATGATTAATTTTGATGACCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF688

Protein Analysis

722

Amino Acids

80.89

Weight (kDa)

6.84

Isoelectric Point (pI)

41.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAF1 PF04857 135 - 498 4.4e-61 CAF1 family ribonuclease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016594)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21695 AT1G77400
fragaria_vesca FvH4_2g27560
malus_domestica MD15G1344600.v1.1
prunus_persica Prupe.1G492300_v2.0.a1
pyrus_communis pycom15g30780
rosa_chinensis RchiOBHm_Chr6g0296401
rosa_laevigata RLG00000011696
rosa_roxburghii Rroxscaffold_7G00171580 Rroxscaffold_7G00178530
rosa_rugosa Rorug06G0262000
rosa_samantha Rh6BG381700 Rh6DG374300
rosa_wichuraiana Rw6G032560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1468
AccB1I GGYRCC 1 cut(s) 513
AccB7I CCANNNNNTGG 2 cut(s) 317, 1127
AccBSI CCGCTC 1 cut(s) 638
AccI GTMKAC 1 cut(s) 2135
AccII CGCG 4 cut(s) 181, 519, 521, 569
AccIII TCCGGA 1 cut(s) 1606
AclI AACGTT 1 cut(s) 1209
AclWI GGATC 4 cut(s) 56, 1024, 1963, 2072
AcoI YGGCCR 3 cut(s) 241, 453, 471
AcsI RAATTY 6 cut(s) 415, 1008, 1331, 1539, 1602, 2124
AcuI CTGAAG 6 cut(s) 291, 345, 575, 698, 1829, 1866
AcvI CACGTG 1 cut(s) 186
AcyI GRCGYC 1 cut(s) 836
AfaI GTAC 6 cut(s) 60, 566, 785, 1062, 1138, 1661
AfiI CCNNNNNNNGG 4 cut(s) 317, 378, 839, 1127
AflIII ACRYGT 2 cut(s) 185, 1656
AgsI TTSAA 7 cut(s) 70, 442, 556, 713, 1205, 1329, 2106
AjiI CACGTC 1 cut(s) 1657
AjnI CCWGG 7 cut(s) 97, 218, 276, 450, 582, 1695, 1903
Alw26I GTCTC 2 cut(s) 1294, 1978
AlwI GGATC 4 cut(s) 56, 1024, 1963, 2072
AlwNI CAGNNNCTG 1 cut(s) 1725
Aor13HI TCCGGA 1 cut(s) 1606
AoxI GGCC 9 cut(s) 222, 232, 241, 266, 279, 453, 471, 1432, 1981
ApaI GGGCCC 1 cut(s) 226
ApeKI GCWGC 5 cut(s) 481, 523, 809, 1047, 1463
ApoI RAATTY 6 cut(s) 415, 1008, 1331, 1539, 1602, 2124
AseI ATTAAT 1 cut(s) 2151
Asp700I GAANNNNTTC 1 cut(s) 1104
AspLEI GCGC 4 cut(s) 183, 371, 521, 523
AspS9I GGNCC 7 cut(s) 222, 223, 232, 266, 280, 1433, 1981
AsuC2I CCSGG 2 cut(s) 457, 840
AsuHPI GGTGA 7 cut(s) 406, 415, 625, 632, 1264, 1459, 1625
BaeGI GKGCMC 1 cut(s) 226
BanI GGYRCC 1 cut(s) 513
BanII GRGCYC 1 cut(s) 226
BarI GAAGNNNNNNTAC 2 cut(s) 548, 580
BauI CACGAG 3 cut(s) 107, 364, 912
BbrPI CACGTG 1 cut(s) 186
BbsI GAAGAC 1 cut(s) 1854
BbvI GCAGC 5 cut(s) 468, 510, 821, 1059, 1475
BccI CCATC 6 cut(s) 504, 767, 991, 1422, 1955, 1963
BceAI ACGGC 7 cut(s) 65, 362, 458, 511, 561, 676, 2131
BciT130I CCWGG 7 cut(s) 99, 220, 278, 452, 584, 1697, 1905
BcnI CCSGG 2 cut(s) 457, 840
BcoDI GTCTC 2 cut(s) 1294, 1978
BfaI CTAG 1 cut(s) 666
BfmI CTRYAG 4 cut(s) 482, 807, 1461, 2086
BfoI RGCGCY 1 cut(s) 372
BfuAI ACCTGC 1 cut(s) 1468
BglI GCCNNNNNGGC 1 cut(s) 240
BisI GCNGC 8 cut(s) 350, 482, 524, 570, 600, 810, 1048, 1464
BlpI GCTNAGC 3 cut(s) 87, 1586, 1617
BlsI GCNGC 8 cut(s) 351, 483, 525, 571, 601, 811, 1049, 1465
Bme1390I CCNGG 9 cut(s) 99, 220, 278, 452, 457, 584, 840, 1697, 1905
BmgBI CACGTC 1 cut(s) 1657
BmgT120I GGNCC 7 cut(s) 222, 223, 232, 266, 280, 1433, 1981
BmiI GGNNCC 3 cut(s) 224, 515, 1375
BmrFI CCNGG 9 cut(s) 99, 220, 278, 452, 457, 584, 840, 1697, 1905
BmrI ACTGGG 1 cut(s) 239
BmsI GCATC 3 cut(s) 678, 955, 1068
BmuI ACTGGG 1 cut(s) 239
BpiI GAAGAC 1 cut(s) 1854
BplI GAGNNNNNCTC 2 cut(s) 1958, 1990
BpmI CTGGAG 5 cut(s) 53, 339, 1094, 1629, 1747
Bpu1102I GCTNAGC 3 cut(s) 87, 1586, 1617
BpuEI CTTGAG 5 cut(s) 723, 937, 1003, 1399, 1506
BpuMI CCSGG 2 cut(s) 457, 840
Bsa29I ATCGAT 2 cut(s) 145, 1257
BsaAI YACGTR 1 cut(s) 186
BsaHI GRCGYC 1 cut(s) 836
BsaI GGTCTC 1 cut(s) 1978
BsaJI CCNNGG 7 cut(s) 97, 219, 276, 330, 372, 1695, 2058
BsaWI WCCGGW 2 cut(s) 61, 1606
BsaXI ACNNNNNCTCC 2 cut(s) 66, 96
Bsc4I CCNNNNNNNGG 4 cut(s) 317, 378, 839, 1127
Bse118I RCCGGY 1 cut(s) 1348
Bse1I ACTGG 2 cut(s) 234, 1077
BseAI TCCGGA 1 cut(s) 1606
BseBI CCWGG 7 cut(s) 99, 220, 278, 452, 584, 1697, 1905
BseCI ATCGAT 2 cut(s) 145, 1257
BseDI CCNNGG 7 cut(s) 97, 219, 276, 330, 372, 1695, 2058
BseGI GGATG 2 cut(s) 515, 693
BseLI CCNNNNNNNGG 4 cut(s) 317, 378, 839, 1127
BseMII CTCAG 5 cut(s) 101, 965, 1154, 1600, 1989
BseNI ACTGG 2 cut(s) 234, 1077
BsePI GCGCGC 1 cut(s) 519
BseRI GAGGAG 1 cut(s) 449
BseSI GKGCMC 1 cut(s) 226
BseXI GCAGC 5 cut(s) 468, 510, 821, 1059, 1475
BseYI CCCAGC 2 cut(s) 196, 1120
BsgI GTGCAG 1 cut(s) 346
Bsh1236I CGCG 4 cut(s) 181, 519, 521, 569
BshFI GGCC 9 cut(s) 224, 234, 243, 268, 281, 455, 473, 1434, 1983
BshNI GGYRCC 1 cut(s) 513
BshVI ATCGAT 2 cut(s) 145, 1257
BsiSI CCGG 5 cut(s) 62, 456, 840, 1349, 1607
BslFI GGGAC 2 cut(s) 80, 1015
BslI CCNNNNNNNGG 4 cut(s) 317, 378, 839, 1127
BsmAI GTCTC 2 cut(s) 1294, 1978
BsmFI GGGAC 2 cut(s) 80, 1015
BsmI GAATGC 2 cut(s) 1618, 1809
BsnI GGCC 9 cut(s) 224, 234, 243, 268, 281, 455, 473, 1434, 1983
Bso31I GGTCTC 1 cut(s) 1978
Bsp120I GGGCCC 1 cut(s) 222
Bsp1286I GDGCHC 1 cut(s) 226
Bsp13I TCCGGA 1 cut(s) 1606
Bsp1407I TGTACA 1 cut(s) 1659
Bsp143I GATC 5 cut(s) 48, 1016, 1254, 1955, 2077
Bsp1720I GCTNAGC 3 cut(s) 87, 1586, 1617
Bsp19I CCATGG 1 cut(s) 330
BspANI GGCC 9 cut(s) 224, 234, 243, 268, 281, 455, 473, 1434, 1983
BspCNI CTCAG 5 cut(s) 100, 966, 1153, 1599, 1988
BspDI ATCGAT 2 cut(s) 145, 1257
BspEI TCCGGA 1 cut(s) 1606
BspFNI CGCG 4 cut(s) 181, 519, 521, 569
BspLI GGNNCC 3 cut(s) 224, 515, 1375
BspMAI CTGCAG 3 cut(s) 486, 811, 1465
BspMI ACCTGC 1 cut(s) 1468
BspPI GGATC 4 cut(s) 56, 1024, 1963, 2072
BspQI GCTCTTC 1 cut(s) 1805
BspT107I GGYRCC 1 cut(s) 513
BspTNI GGTCTC 1 cut(s) 1978
BsrBI CCGCTC 1 cut(s) 638
BsrFI RCCGGY 1 cut(s) 1348
BsrGI TGTACA 1 cut(s) 1659
BsrI ACTGG 2 cut(s) 234, 1077
BssAI RCCGGY 1 cut(s) 1348
BssECI CCNNGG 7 cut(s) 97, 219, 276, 330, 372, 1695, 2058
BssHII GCGCGC 1 cut(s) 519
BssMI GATC 5 cut(s) 48, 1016, 1254, 1955, 2077
BssNI GRCGYC 1 cut(s) 836
BssSI CACGAG 3 cut(s) 107, 364, 912
BssT1I CCWWGG 3 cut(s) 330, 372, 2058
Bst2BI CACGAG 3 cut(s) 107, 364, 912
Bst2UI CCWGG 7 cut(s) 99, 220, 278, 452, 584, 1697, 1905
Bst4CI ACNGT 2 cut(s) 877, 2090
Bst6I CTCTTC 1 cut(s) 1805
BstACI GRCGYC 1 cut(s) 836
BstAUI TGTACA 1 cut(s) 1659
BstBAI YACGTR 1 cut(s) 186
BstC8I GCNNGC 7 cut(s) 521, 604, 763, 937, 1052, 1068, 1350
BstDEI CTNAG 8 cut(s) 87, 617, 974, 1140, 1586, 1617, 1975, 1985
BstDSI CCRYGG 1 cut(s) 330
BstEII GGTNACC 1 cut(s) 1447
BstF5I GGATG 2 cut(s) 515, 693
BstFNI CGCG 4 cut(s) 181, 519, 521, 569
BstH2I RGCGCY 1 cut(s) 372
BstHHI GCGC 4 cut(s) 183, 371, 521, 523
BstKTI GATC 5 cut(s) 51, 1019, 1257, 1958, 2080
BstMAI GTCTC 2 cut(s) 1294, 1978
BstMBI GATC 5 cut(s) 48, 1016, 1254, 1955, 2077
BstMWI GCNNNNNNNGC 7 cut(s) 178, 240, 355, 520, 566, 1380, 2048
BstNI CCWGG 7 cut(s) 99, 220, 278, 452, 584, 1697, 1905
BstNSI RCATGY 1 cut(s) 1819
BstPI GGTNACC 1 cut(s) 1447
BstSCI CCNGG 9 cut(s) 97, 218, 276, 450, 455, 582, 838, 1695, 1903
BstSFI CTRYAG 4 cut(s) 482, 807, 1461, 2086
BstSLI GKGCMC 1 cut(s) 226
BstUI CGCG 4 cut(s) 181, 519, 521, 569
BstV1I GCAGC 5 cut(s) 468, 510, 821, 1059, 1475
BstV2I GAAGAC 1 cut(s) 1854
BstX2I RGATCY 1 cut(s) 2077
BstYI RGATCY 1 cut(s) 2077
Bsu15I ATCGAT 2 cut(s) 145, 1257
BsuRI GGCC 9 cut(s) 224, 234, 243, 268, 281, 455, 473, 1434, 1983
BsuTUI ATCGAT 2 cut(s) 145, 1257
BtgI CCRYGG 1 cut(s) 330
BtrI CACGTC 1 cut(s) 1657
BtsCI GGATG 2 cut(s) 515, 693
BtsIMutI CAGTG 2 cut(s) 1070, 1099
BveI ACCTGC 1 cut(s) 1468
Cac8I GCNNGC 7 cut(s) 521, 604, 763, 937, 1052, 1068, 1350
CaiI CAGNNNCTG 1 cut(s) 1725
CfoI GCGC 4 cut(s) 183, 371, 521, 523
Cfr10I RCCGGY 1 cut(s) 1348
Cfr13I GGNCC 7 cut(s) 222, 223, 232, 266, 280, 1433, 1981
ClaI ATCGAT 2 cut(s) 145, 1257
CseI GACGC 2 cut(s) 844, 1043
CsiI ACCWGGT 1 cut(s) 1903
Csp6I GTAC 6 cut(s) 59, 565, 784, 1061, 1137, 1660
CviAII CATG 6 cut(s) 331, 733, 1026, 1030, 1816, 1832
CviQI GTAC 6 cut(s) 59, 565, 784, 1061, 1137, 1660
DdeI CTNAG 8 cut(s) 87, 617, 974, 1140, 1586, 1617, 1975, 1985
DpnI GATC 5 cut(s) 50, 1018, 1256, 1957, 2079
DpnII GATC 5 cut(s) 48, 1016, 1254, 1955, 2077
EaeI YGGCCR 3 cut(s) 241, 453, 471
Eam1104I CTCTTC 1 cut(s) 1805
EarI CTCTTC 1 cut(s) 1805
EciI GGCGGA 1 cut(s) 587
Eco130I CCWWGG 3 cut(s) 330, 372, 2058
Eco24I GRGCYC 1 cut(s) 226
Eco31I GGTCTC 1 cut(s) 1978
Eco32I GATATC 2 cut(s) 1408, 1717
Eco57I CTGAAG 6 cut(s) 291, 345, 575, 698, 1829, 1866
Eco72I CACGTG 1 cut(s) 186
Eco91I GGTNACC 1 cut(s) 1447
EcoO109I RGGNCCY 1 cut(s) 1981
EcoO65I GGTNACC 1 cut(s) 1447
EcoRII CCWGG 7 cut(s) 97, 218, 276, 450, 582, 1695, 1903
EcoRV GATATC 2 cut(s) 1408, 1717
EcoT14I CCWWGG 3 cut(s) 330, 372, 2058
EcoT22I ATGCAT 1 cut(s) 1031
EcoT38I GRGCYC 1 cut(s) 226
ErhI CCWWGG 3 cut(s) 330, 372, 2058
FaeI CATG 6 cut(s) 334, 736, 1029, 1033, 1819, 1835
FalI AAGNNNNNCTT 4 cut(s) 1050, 1082, 2015, 2047
FaqI GGGAC 2 cut(s) 80, 1015
FatI CATG 6 cut(s) 330, 732, 1025, 1029, 1815, 1831
FauI CCCGC 2 cut(s) 370, 499
FblI GTMKAC 1 cut(s) 2135
Fnu4HI GCNGC 8 cut(s) 350, 482, 524, 570, 600, 810, 1048, 1464
FokI GGATG 2 cut(s) 522, 700
FriOI GRGCYC 1 cut(s) 226
Fsp4HI GCNGC 8 cut(s) 350, 482, 524, 570, 600, 810, 1048, 1464
FspBI CTAG 1 cut(s) 666
GlaI GCGC 4 cut(s) 182, 370, 520, 522
GluI GCNGC 8 cut(s) 350, 482, 524, 570, 600, 810, 1048, 1464
GsaI CCCAGC 2 cut(s) 200, 1124
GsuI CTGGAG 5 cut(s) 53, 339, 1094, 1629, 1747
HaeII RGCGCY 1 cut(s) 372
HaeIII GGCC 9 cut(s) 224, 234, 243, 268, 281, 455, 473, 1434, 1983
HapII CCGG 5 cut(s) 62, 456, 840, 1349, 1607
HgaI GACGC 2 cut(s) 844, 1043
HhaI GCGC 4 cut(s) 183, 371, 521, 523
Hin1I GRCGYC 1 cut(s) 836
Hin1II CATG 6 cut(s) 334, 736, 1029, 1033, 1819, 1835
Hin6I GCGC 4 cut(s) 181, 369, 519, 521
HinP1I GCGC 4 cut(s) 181, 369, 519, 521
HincII GTYRAC 2 cut(s) 166, 1794
HindII GTYRAC 2 cut(s) 166, 1794
HindIII AAGCTT 1 cut(s) 2067
HpaI GTTAAC 1 cut(s) 166
HpaII CCGG 5 cut(s) 62, 456, 840, 1349, 1607
HphI GGTGA 7 cut(s) 406, 415, 625, 632, 1264, 1459, 1625
Hpy166II GTNNAC 7 cut(s) 115, 166, 1368, 1660, 1662, 1794, 2136
Hpy8I GTNNAC 7 cut(s) 115, 166, 1368, 1660, 1662, 1794, 2136
Hpy99I CGWCG 2 cut(s) 86, 838
HpyAV CCTTC 7 cut(s) 391, 403, 550, 673, 1438, 1526, 1690
HpyCH4III ACNGT 2 cut(s) 877, 2090
HpyCH4IV ACGT 5 cut(s) 185, 1209, 1316, 1356, 1656
HpyF10VI GCNNNNNNNGC 7 cut(s) 178, 240, 355, 520, 566, 1380, 2048
HpyF3I CTNAG 8 cut(s) 87, 617, 974, 1140, 1586, 1617, 1975, 1985
HpySE526I ACGT 5 cut(s) 185, 1209, 1316, 1356, 1656
Hsp92I GRCGYC 1 cut(s) 836
Hsp92II CATG 6 cut(s) 334, 736, 1029, 1033, 1819, 1835
HspAI GCGC 4 cut(s) 181, 369, 519, 521
Kpn2I TCCGGA 1 cut(s) 1606
KroI GCCGGC 1 cut(s) 1348
KroNI GCCGGC 1 cut(s) 1350
KspAI GTTAAC 1 cut(s) 166
Kzo9I GATC 5 cut(s) 48, 1016, 1254, 1955, 2077
LguI GCTCTTC 1 cut(s) 1805
LmnI GCTCC 5 cut(s) 133, 320, 574, 1379, 1648
Lsp1109I GCAGC 5 cut(s) 468, 510, 821, 1059, 1475
LweI GCATC 3 cut(s) 678, 955, 1068
MabI ACCWGGT 1 cut(s) 1903
MaeI CTAG 1 cut(s) 666
MaeII ACGT 5 cut(s) 185, 1209, 1316, 1356, 1656
MaeIII GTNAC 5 cut(s) 188, 403, 1447, 1827, 1937
MalI GATC 5 cut(s) 50, 1018, 1256, 1957, 2079
MbiI CCGCTC 1 cut(s) 638
MboI GATC 5 cut(s) 48, 1016, 1254, 1955, 2077
MboII GAAGA 8 cut(s) 196, 394, 852, 1435, 1573, 1822, 1859, 2087
MflI RGATCY 1 cut(s) 2077
MhlI GDGCHC 1 cut(s) 226
MlyI GAGTC 8 cut(s) 23, 44, 84, 231, 331, 2025, 2063, 2135
MmeI TCCRAC 2 cut(s) 441, 857
Mph1103I ATGCAT 1 cut(s) 1031
MroI TCCGGA 1 cut(s) 1606
MroNI GCCGGC 1 cut(s) 1348
MroXI GAANNNNTTC 1 cut(s) 1104
MseI TTAA 9 cut(s) 165, 756, 866, 906, 918, 1112, 1305, 1439, 2151
MspA1I CMGCKG 2 cut(s) 1752, 1799
MspI CCGG 5 cut(s) 62, 456, 840, 1349, 1607
MspR9I CCNGG 9 cut(s) 99, 220, 278, 452, 457, 584, 840, 1697, 1905
Mva1269I GAATGC 2 cut(s) 1618, 1809
MvaI CCWGG 7 cut(s) 99, 220, 278, 452, 584, 1697, 1905
MvnI CGCG 4 cut(s) 181, 519, 521, 569
MwoI GCNNNNNNNGC 7 cut(s) 178, 240, 355, 520, 566, 1380, 2048
NaeI GCCGGC 1 cut(s) 1350
NciI CCSGG 2 cut(s) 457, 840
NcoI CCATGG 1 cut(s) 330
NdeII GATC 5 cut(s) 48, 1016, 1254, 1955, 2077
NgoMIV GCCGGC 1 cut(s) 1348
NlaIII CATG 6 cut(s) 334, 736, 1029, 1033, 1819, 1835
NlaIV GGNNCC 3 cut(s) 224, 515, 1375
NmeAIII GCCGAG 1 cut(s) 219
NmuCI GTSAC 5 cut(s) 188, 403, 1447, 1827, 1937
NsiI ATGCAT 1 cut(s) 1031
NspI RCATGY 1 cut(s) 1819
PauI GCGCGC 1 cut(s) 519
PciSI GCTCTTC 1 cut(s) 1805
PcsI WCGNNNNNNNCGW 3 cut(s) 90, 537, 1243
PctI GAATGC 2 cut(s) 1618, 1809
PdiI GCCGGC 1 cut(s) 1350
PdmI GAANNNNTTC 1 cut(s) 1104
PfeI GAWTC 6 cut(s) 803, 829, 857, 1700, 1722, 2102
PflMI CCANNNNNTGG 2 cut(s) 317, 1127
PkrI GCNGC 8 cut(s) 351, 483, 525, 571, 601, 811, 1049, 1465
PleI GAGTC 8 cut(s) 22, 43, 83, 231, 331, 2024, 2062, 2135
PmaCI CACGTG 1 cut(s) 186
PmlI CACGTG 1 cut(s) 186
PpsI GAGTC 8 cut(s) 22, 43, 83, 231, 331, 2024, 2062, 2135
Ppu21I YACGTR 1 cut(s) 186
PshBI ATTAAT 1 cut(s) 2151
Psp1406I AACGTT 1 cut(s) 1209
Psp6I CCWGG 7 cut(s) 97, 218, 276, 450, 582, 1695, 1903
PspCI CACGTG 1 cut(s) 186
PspEI GGTNACC 1 cut(s) 1447
PspFI CCCAGC 2 cut(s) 196, 1120
PspGI CCWGG 7 cut(s) 97, 218, 276, 450, 582, 1695, 1903
PspN4I GGNNCC 3 cut(s) 224, 515, 1375
PspOMI GGGCCC 1 cut(s) 222
PspPI GGNCC 7 cut(s) 222, 223, 232, 266, 280, 1433, 1981
PstI CTGCAG 3 cut(s) 486, 811, 1465
PstNI CAGNNNCTG 1 cut(s) 1725
PsuI RGATCY 1 cut(s) 2077
PteI GCGCGC 1 cut(s) 519
PvuII CAGCTG 1 cut(s) 1752
RsaI GTAC 6 cut(s) 60, 566, 785, 1062, 1138, 1661
RsaNI GTAC 6 cut(s) 59, 565, 784, 1061, 1137, 1660
SapI GCTCTTC 1 cut(s) 1805
SaqAI TTAA 9 cut(s) 165, 756, 866, 906, 918, 1112, 1305, 1439, 2151
SatI GCNGC 8 cut(s) 350, 482, 524, 570, 600, 810, 1048, 1464
Sau3AI GATC 5 cut(s) 48, 1016, 1254, 1955, 2077
Sau96I GGNCC 7 cut(s) 222, 223, 232, 266, 280, 1433, 1981
SchI GAGTC 8 cut(s) 23, 44, 84, 231, 331, 2025, 2063, 2135
ScrFI CCNGG 9 cut(s) 99, 220, 278, 452, 457, 584, 840, 1697, 1905
SduI GDGCHC 1 cut(s) 226
SexAI ACCWGGT 1 cut(s) 1903
SfaNI GCATC 3 cut(s) 678, 955, 1068
SfcI CTRYAG 4 cut(s) 482, 807, 1461, 2086
SfiI GGCCNNNNNGGCC 1 cut(s) 240
SmlI CTYRAG 5 cut(s) 738, 952, 982, 1378, 1521
SmoI CTYRAG 5 cut(s) 738, 952, 982, 1378, 1521
SspI AATATT 1 cut(s) 1429
SspMI CTAG 1 cut(s) 666
StyD4I CCNGG 9 cut(s) 97, 218, 276, 450, 455, 582, 838, 1695, 1903
StyI CCWWGG 3 cut(s) 330, 372, 2058
TaaI ACNGT 2 cut(s) 877, 2090
TaiI ACGT 5 cut(s) 188, 1212, 1319, 1359, 1659
TaqI TCGA 6 cut(s) 51, 145, 531, 1150, 1246, 1257
TatI WGTACW 2 cut(s) 1060, 1659
TauI GCSGC 3 cut(s) 352, 572, 602
TfiI GAWTC 6 cut(s) 803, 829, 857, 1700, 1722, 2102
Tru1I TTAA 9 cut(s) 165, 756, 866, 906, 918, 1112, 1305, 1439, 2151
Tru9I TTAA 9 cut(s) 165, 756, 866, 906, 918, 1112, 1305, 1439, 2151
TscAI CASTG 2 cut(s) 1077, 1099
TseFI GTSAC 5 cut(s) 188, 403, 1447, 1827, 1937
TseI GCWGC 5 cut(s) 481, 523, 809, 1047, 1463
Tsp45I GTSAC 5 cut(s) 188, 403, 1447, 1827, 1937
TspDTI ATGAA 9 cut(s) 17, 312, 687, 1046, 1113, 1313, 1436, 1532, 1545
TspRI CASTG 2 cut(s) 1077, 1099
Van91I CCANNNNNTGG 2 cut(s) 317, 1127
VspI ATTAAT 1 cut(s) 2151
XapI RAATTY 6 cut(s) 415, 1008, 1331, 1539, 1602, 2124
XceI RCATGY 1 cut(s) 1819
XmiI GTMKAC 1 cut(s) 2135
XmnI GAANNNNTTC 1 cut(s) 1104
XspI CTAG 1 cut(s) 666
Zsp2I ATGCAT 1 cut(s) 1031
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.