Rroxscaffold_7G00178530

BEST Arabidopsis thaliana protein match is hydroxyproline-rich glycoprotein family protein (TAIR AT1G21695.1)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0016594
Physical Location & Seq
Reverse (-)
18209155 .. 18209959
805 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00178530.1

Sequence Viewer

Length: 627 bp
ATGGCGATTGATGAGTATGATTTCACAAAACCAGGAGCTATCCCATTTCAATGGGAAATACGCCCCGGCGTACCCAAAGTCCAACACCAAAAACAACCACCACTTCCGTCACCGCCACCGCCACCGCCACCGCCACCGCAAACTTGTGATTACAATCCTAGTCCTCTCAAGCCGCCACCAGCCGGGTTCGTTTTCGTGCCTCTAGCCGAGCCACGGACCCGGTCGTTTCGTTTGGGTTCTGCAACCCGATCGCGTTCAGAGCGGTGGAGGTTTGAGCAGCCCAATATGCTGGCCCGGCGACCCGATATGGTTTCGTCACCGGGGTGCTTCTTGTCTCCTCTGCTCAGGAGAAAGCTGAGCGGGAAAAAGGGGAAGAGTGGTGGTGCAAGAACGGTACCCGAACCCGAGCCCGAACCCGACTGCAGTTCTGACCTTGAAACACTGGCCCGGTGGTCGCTTTCTTCCCGGAAATCGCTGCTTTCGCCGACGTCGATGTCGTCGTACTCGTCCTACCAGTCGTCCCCGCGACCCGTAAGTGACGCAGAGTGGGCCGGTCAACTCACAAGATTCAAGATCTTGAAATGTAGTTGTGGAAAAAGGGACAAGCCGCTGGGAAGGATGCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF688

Protein Analysis

208

Amino Acids

23.12

Weight (kDa)

9.98

Isoelectric Point (pI)

85.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016594)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21695 AT1G77400
fragaria_vesca FvH4_2g27560
malus_domestica MD15G1344600.v1.1
prunus_persica Prupe.1G492300_v2.0.a1
pyrus_communis pycom15g30780
rosa_chinensis RchiOBHm_Chr6g0296401
rosa_laevigata RLG00000011696
rosa_roxburghii Rroxscaffold_7G00171580 Rroxscaffold_7G00178530
rosa_rugosa Rorug06G0262000
rosa_samantha Rh6BG381700 Rh6DG374300
rosa_wichuraiana Rw6G032560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 493
AatII GACGTC 1 cut(s) 491
Acc65I GGTACC 1 cut(s) 394
AccB1I GGYRCC 1 cut(s) 394
AccBSI CCGCTC 2 cut(s) 262, 360
AccII CGCG 2 cut(s) 253, 526
AcyI GRCGYC 1 cut(s) 488
AfaI GTAC 3 cut(s) 72, 396, 503
AfiI CCNNNNNNNGG 2 cut(s) 182, 213
AgsI TTSAA 4 cut(s) 50, 437, 571, 580
AjnI CCWGG 1 cut(s) 31
AleI CACNNNNGTG 1 cut(s) 322
AluBI AGCT 2 cut(s) 38, 355
AluI AGCT 2 cut(s) 38, 355
Alw26I GTCTC 1 cut(s) 339
Ama87I CYCGRG 1 cut(s) 404
AoxI GGCC 3 cut(s) 291, 444, 549
ApeKI GCWGC 2 cut(s) 277, 475
Asp718I GGTACC 1 cut(s) 394
AspS9I GGNCC 4 cut(s) 216, 292, 445, 549
AsuC2I CCSGG 7 cut(s) 66, 184, 220, 295, 321, 448, 466
AsuHPI GGTGA 2 cut(s) 102, 309
AvaI CYCGRG 1 cut(s) 404
AvaII GGWCC 1 cut(s) 216
BanI GGYRCC 1 cut(s) 394
BanII GRGCYC 1 cut(s) 411
BbvI GCAGC 2 cut(s) 289, 462
BcgI CGANNNNNNTGC 2 cut(s) 231, 265
BciT130I CCWGG 1 cut(s) 33
BcnI CCSGG 7 cut(s) 66, 184, 220, 295, 321, 448, 466
BcoDI GTCTC 1 cut(s) 339
BfaI CTAG 2 cut(s) 159, 203
BfmI CTRYAG 1 cut(s) 421
BglII AGATCT 1 cut(s) 573
BisI GCNGC 4 cut(s) 173, 278, 476, 608
BlpI GCTNAGC 1 cut(s) 356
BlsI GCNGC 4 cut(s) 174, 279, 477, 609
Bme1390I CCNGG 8 cut(s) 33, 66, 184, 220, 295, 321, 448, 466
Bme18I GGWCC 1 cut(s) 216
BmeT110I CYCGRG 1 cut(s) 404
BmgT120I GGNCC 4 cut(s) 216, 292, 445, 549
BmiI GGNNCC 2 cut(s) 218, 396
BmrFI CCNGG 8 cut(s) 33, 66, 184, 220, 295, 321, 448, 466
BmsI GCATC 1 cut(s) 609
Bpu10I CCTNAGC 1 cut(s) 344
Bpu1102I GCTNAGC 1 cut(s) 356
BpuEI CTTGAG 1 cut(s) 152
BpuMI CCSGG 7 cut(s) 66, 184, 220, 295, 321, 448, 466
BsaBI GATNNNNATC 1 cut(s) 153
BsaHI GRCGYC 1 cut(s) 488
BsaJI CCNNGG 3 cut(s) 64, 212, 320
Bsc4I CCNNNNNNNGG 2 cut(s) 182, 213
Bse118I RCCGGY 1 cut(s) 551
Bse1I ACTGG 2 cut(s) 447, 514
Bse8I GATNNNNATC 1 cut(s) 153
BseBI CCWGG 1 cut(s) 33
BseDI CCNNGG 3 cut(s) 64, 212, 320
BseGI GGATG 1 cut(s) 624
BseJI GATNNNNATC 1 cut(s) 153
BseLI CCNNNNNNNGG 2 cut(s) 182, 213
BseMII CTCAG 2 cut(s) 347, 358
BseNI ACTGG 2 cut(s) 447, 514
BseRI GAGGAG 1 cut(s) 327
BseXI GCAGC 2 cut(s) 289, 462
BseYI CCCAGC 1 cut(s) 610
Bsh1236I CGCG 2 cut(s) 253, 526
Bsh1285I CGRYCG 2 cut(s) 224, 251
BshFI GGCC 3 cut(s) 293, 446, 551
BshNI GGYRCC 1 cut(s) 394
BsiEI CGRYCG 2 cut(s) 224, 251
BsiHKCI CYCGRG 1 cut(s) 404
BsiSI CCGG 8 cut(s) 66, 183, 220, 295, 320, 448, 466, 552
BslFI GGGAC 2 cut(s) 505, 614
BslI CCNNNNNNNGG 2 cut(s) 182, 213
BsmAI GTCTC 1 cut(s) 339
BsmFI GGGAC 2 cut(s) 505, 614
BsnI GGCC 3 cut(s) 293, 446, 551
BsoBI CYCGRG 1 cut(s) 404
Bsp1286I GDGCHC 1 cut(s) 411
Bsp143I GATC 2 cut(s) 248, 573
Bsp1720I GCTNAGC 1 cut(s) 356
BspANI GGCC 3 cut(s) 293, 446, 551
BspCNI CTCAG 2 cut(s) 348, 357
BspFNI CGCG 2 cut(s) 253, 526
BspLI GGNNCC 2 cut(s) 218, 396
BspMAI CTGCAG 1 cut(s) 425
BspT107I GGYRCC 1 cut(s) 394
BsrBI CCGCTC 2 cut(s) 262, 360
BsrFI RCCGGY 1 cut(s) 551
BsrI ACTGG 2 cut(s) 447, 514
BssAI RCCGGY 1 cut(s) 551
BssECI CCNNGG 3 cut(s) 64, 212, 320
BssMI GATC 2 cut(s) 248, 573
BssNI GRCGYC 1 cut(s) 488
Bst2UI CCWGG 1 cut(s) 33
Bst4CI ACNGT 1 cut(s) 394
Bst6I CTCTTC 1 cut(s) 368
BstACI GRCGYC 1 cut(s) 488
BstC8I GCNNGC 1 cut(s) 291
BstDEI CTNAG 2 cut(s) 344, 356
BstDSI CCRYGG 1 cut(s) 212
BstF5I GGATG 1 cut(s) 624
BstFNI CGCG 2 cut(s) 253, 526
BstKTI GATC 2 cut(s) 251, 576
BstMAI GTCTC 1 cut(s) 339
BstMBI GATC 2 cut(s) 248, 573
BstMCI CGRYCG 2 cut(s) 224, 251
BstMWI GCNNNNNNNGC 5 cut(s) 259, 286, 295, 481, 548
BstNI CCWGG 1 cut(s) 33
BstSCI CCNGG 8 cut(s) 31, 64, 182, 218, 293, 319, 446, 464
BstSFI CTRYAG 1 cut(s) 421
BstUI CGCG 2 cut(s) 253, 526
BstV1I GCAGC 2 cut(s) 289, 462
BstX2I RGATCY 1 cut(s) 573
BstXI CCANNNNNNTGG 2 cut(s) 51, 289
BstYI RGATCY 1 cut(s) 573
BsuRI GGCC 3 cut(s) 293, 446, 551
BtgI CCRYGG 1 cut(s) 212
BtsCI GGATG 1 cut(s) 624
BtsIMutI CAGTG 1 cut(s) 440
Cac8I GCNNGC 1 cut(s) 291
Cfr10I RCCGGY 1 cut(s) 551
Cfr13I GGNCC 4 cut(s) 216, 292, 445, 549
CseI GACGC 1 cut(s) 548
Csp6I GTAC 3 cut(s) 71, 395, 502
CviQI GTAC 3 cut(s) 71, 395, 502
DdeI CTNAG 2 cut(s) 344, 356
DpnI GATC 2 cut(s) 250, 575
DpnII GATC 2 cut(s) 248, 573
DrdI GACNNNNNNGTC 1 cut(s) 493
DseDI GACNNNNNNGTC 1 cut(s) 493
Eam1104I CTCTTC 1 cut(s) 368
EarI CTCTTC 1 cut(s) 368
Eco24I GRGCYC 1 cut(s) 411
Eco47I GGWCC 1 cut(s) 216
Eco88I CYCGRG 1 cut(s) 404
EcoRII CCWGG 1 cut(s) 31
EcoT38I GRGCYC 1 cut(s) 411
FaiI YATR 4 cut(s) 18, 287, 308, 625
FaqI GGGAC 2 cut(s) 505, 614
FauI CCCGC 2 cut(s) 353, 531
Fnu4HI GCNGC 4 cut(s) 173, 278, 476, 608
FriOI GRGCYC 1 cut(s) 411
Fsp4HI GCNGC 4 cut(s) 173, 278, 476, 608
FspBI CTAG 2 cut(s) 159, 203
GluI GCNGC 4 cut(s) 173, 278, 476, 608
GsaI CCCAGC 1 cut(s) 614
HaeIII GGCC 3 cut(s) 293, 446, 551
HapII CCGG 8 cut(s) 66, 183, 220, 295, 320, 448, 466, 552
HgaI GACGC 1 cut(s) 548
Hin1I GRCGYC 1 cut(s) 488
HincII GTYRAC 1 cut(s) 557
HindII GTYRAC 1 cut(s) 557
HinfI GANTC 1 cut(s) 567
HpaII CCGG 8 cut(s) 66, 183, 220, 295, 320, 448, 466, 552
HphI GGTGA 2 cut(s) 102, 309
Hpy166II GTNNAC 1 cut(s) 557
Hpy188I TCNGA 2 cut(s) 259, 430
Hpy188III TCNNGA 3 cut(s) 346, 571, 577
Hpy8I GTNNAC 1 cut(s) 557
Hpy99I CGWCG 3 cut(s) 490, 493, 502
HpyAV CCTTC 1 cut(s) 609
HpyCH4III ACNGT 1 cut(s) 394
HpyCH4IV ACGT 1 cut(s) 488
HpyCH4V TGCA 3 cut(s) 242, 386, 423
HpyF10VI GCNNNNNNNGC 5 cut(s) 259, 286, 295, 481, 548
HpyF3I CTNAG 2 cut(s) 344, 356
HpySE526I ACGT 1 cut(s) 488
Hsp92I GRCGYC 1 cut(s) 488
KpnI GGTACC 1 cut(s) 398
Kzo9I GATC 2 cut(s) 248, 573
LmnI GCTCC 1 cut(s) 35
Lsp1109I GCAGC 2 cut(s) 289, 462
LweI GCATC 1 cut(s) 609
MaeI CTAG 2 cut(s) 159, 203
MaeII ACGT 1 cut(s) 488
MaeIII GTNAC 3 cut(s) 108, 315, 536
MalI GATC 2 cut(s) 250, 575
MbiI CCGCTC 2 cut(s) 262, 360
MboI GATC 2 cut(s) 248, 573
MboII GAAGA 2 cut(s) 385, 453
MflI RGATCY 1 cut(s) 573
MhlI GDGCHC 1 cut(s) 411
MmeI TCCRAC 1 cut(s) 106
MnlI CCTC 4 cut(s) 174, 210, 261, 348
MslI CAYNNNNRTG 2 cut(s) 49, 322
MspA1I CMGCKG 1 cut(s) 610
MspI CCGG 8 cut(s) 66, 183, 220, 295, 320, 448, 466, 552
MspR9I CCNGG 8 cut(s) 33, 66, 184, 220, 295, 321, 448, 466
MvaI CCWGG 1 cut(s) 33
MvnI CGCG 2 cut(s) 253, 526
MwoI GCNNNNNNNGC 5 cut(s) 259, 286, 295, 481, 548
NciI CCSGG 7 cut(s) 66, 184, 220, 295, 321, 448, 466
NdeII GATC 2 cut(s) 248, 573
NlaIV GGNNCC 2 cut(s) 218, 396
NmeAIII GCCGAG 1 cut(s) 232
NmuCI GTSAC 3 cut(s) 108, 315, 536
OliI CACNNNNGTG 1 cut(s) 322
PcsI WCGNNNNNNNCGW 4 cut(s) 488, 494, 497, 503
PfeI GAWTC 1 cut(s) 567
PflFI GACNNNGTC 1 cut(s) 220
PfoI TCCNGGA 1 cut(s) 464
PkrI GCNGC 4 cut(s) 174, 279, 477, 609
Ple19I CGATCG 1 cut(s) 251
Psp6I CCWGG 1 cut(s) 31
PspFI CCCAGC 1 cut(s) 610
PspGI CCWGG 1 cut(s) 31
PspN4I GGNNCC 2 cut(s) 218, 396
PspPI GGNCC 4 cut(s) 216, 292, 445, 549
PstI CTGCAG 1 cut(s) 425
PsuI RGATCY 1 cut(s) 573
PsyI GACNNNGTC 1 cut(s) 220
PvuI CGATCG 1 cut(s) 251
RsaI GTAC 3 cut(s) 72, 396, 503
RsaNI GTAC 3 cut(s) 71, 395, 502
RseI CAYNNNNRTG 2 cut(s) 49, 322
SatI GCNGC 4 cut(s) 173, 278, 476, 608
Sau3AI GATC 2 cut(s) 248, 573
Sau96I GGNCC 4 cut(s) 216, 292, 445, 549
ScrFI CCNGG 8 cut(s) 33, 66, 184, 220, 295, 321, 448, 466
SduI GDGCHC 1 cut(s) 411
SetI ASST 5 cut(s) 40, 272, 357, 435, 491
SfaNI GCATC 1 cut(s) 609
SfcI CTRYAG 1 cut(s) 421
SinI GGWCC 1 cut(s) 216
SmiMI CAYNNNNRTG 2 cut(s) 49, 322
SmlI CTYRAG 1 cut(s) 167
SmoI CTYRAG 1 cut(s) 167
SspMI CTAG 2 cut(s) 159, 203
StyD4I CCNGG 8 cut(s) 31, 64, 182, 218, 293, 319, 446, 464
TaaI ACNGT 1 cut(s) 394
TaiI ACGT 1 cut(s) 491
TaqI TCGA 1 cut(s) 491
TauI GCSGC 2 cut(s) 175, 610
TfiI GAWTC 1 cut(s) 567
TscAI CASTG 1 cut(s) 447
TseFI GTSAC 3 cut(s) 108, 315, 536
TseI GCWGC 2 cut(s) 277, 475
Tsp45I GTSAC 3 cut(s) 108, 315, 536
TspGWI ACGGA 2 cut(s) 96, 229
TspRI CASTG 1 cut(s) 447
Tth111I GACNNNGTC 1 cut(s) 220
VpaK11BI GGWCC 1 cut(s) 216
XspI CTAG 2 cut(s) 159, 203
ZraI GACGTC 1 cut(s) 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.