RLG00000011696

BEST Arabidopsis thaliana protein match is hydroxyproline-rich glycoprotein family protein (TAIR AT1G21695.1)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0016594
Physical Location & Seq
Forward (+)
11808546 .. 11809148
603 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011696

Sequence Viewer

Length: 603 bp
ATGGCGATTGATGAGTATGATTTCACAAAACCAGGAGCTATCCCATTTCAATGGGAAATACGCCCCGGCGTACCCAAAGTCCAACACCAAAAACAACCACCACCACCGTCACCGTCACCGTCACCATCACCGTCACCGTCACCACAAACTTGTGATTACAATCTTAGTCCTCTCAAACCGCCACCAGCCGGGTTCGTGTTCGTGCCTCTAGCCGAGCCACGGACCCGGTCGTTTCGTTTGGGTTCTGCAACCCGATCGCGTTCAGAGCGGTGGCAGTTTGAGCAGCCCAATATGCTGGCCCGGCGACCCGAGATTGTTTCGTCACCGGGGTGCTTCTTGTCTCCTCTGCTAAGGAGAAAGCTGAGCGGGAAGAAGGGGAAGAGTGGTGGTGCAAGAACGGTACCCGAACCCGAACCCGAACCCAAGTCCGAACCCGACTGTATTTCTGACCTTGAAACACTGGCCCGGTGGTCGCTTTCTTCCCGGAAATCGCTGCTTTCGCCGTTCCGTGACTCACCGACGTCGATGTCGTCCTACTCGTCCTACCAGTCGTCCCCGCGACCCGTAAGTGACGCAGAGTGGGCCGGGTTCGGACTCTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF688

Protein Analysis

201

Amino Acids

22.11

Weight (kDa)

9.54

Isoelectric Point (pI)

100.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016594)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21695 AT1G77400
fragaria_vesca FvH4_2g27560
malus_domestica MD15G1344600.v1.1
prunus_persica Prupe.1G492300_v2.0.a1
pyrus_communis pycom15g30780
rosa_chinensis RchiOBHm_Chr6g0296401
rosa_laevigata RLG00000011696
rosa_roxburghii Rroxscaffold_7G00171580 Rroxscaffold_7G00178530
rosa_rugosa Rorug06G0262000
rosa_samantha Rh6BG381700 Rh6DG374300
rosa_wichuraiana Rw6G032560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 526
AatII GACGTC 1 cut(s) 524
Acc65I GGTACC 1 cut(s) 400
AccB1I GGYRCC 1 cut(s) 400
AccBSI CCGCTC 2 cut(s) 268, 366
AccII CGCG 2 cut(s) 259, 559
AciI CCGC 4 cut(s) 179, 268, 366, 557
AcyI GRCGYC 1 cut(s) 521
AfaI GTAC 2 cut(s) 72, 402
AfiI CCNNNNNNNGG 2 cut(s) 188, 219
AgsI TTSAA 2 cut(s) 50, 455
AjnI CCWGG 1 cut(s) 31
AleI CACNNNNGTG 1 cut(s) 328
AluBI AGCT 2 cut(s) 38, 361
AluI AGCT 2 cut(s) 38, 361
Alw26I GTCTC 1 cut(s) 345
Ama87I CYCGRG 1 cut(s) 308
AoxI GGCC 3 cut(s) 297, 462, 582
ApeKI GCWGC 2 cut(s) 283, 493
Asp718I GGTACC 1 cut(s) 400
AspS9I GGNCC 4 cut(s) 222, 298, 463, 582
AsuC2I CCSGG 8 cut(s) 66, 190, 226, 301, 327, 466, 484, 586
AsuHPI GGTGA 8 cut(s) 102, 108, 114, 120, 126, 132, 315, 507
AvaI CYCGRG 1 cut(s) 308
AvaII GGWCC 1 cut(s) 222
BanI GGYRCC 1 cut(s) 400
BbvI GCAGC 2 cut(s) 295, 480
BccI CCATC 1 cut(s) 133
BceAI ACGGC 1 cut(s) 487
BcgI CGANNNNNNTGC 2 cut(s) 237, 271
BciT130I CCWGG 1 cut(s) 33
BcnI CCSGG 8 cut(s) 66, 190, 226, 301, 327, 466, 484, 586
BcoDI GTCTC 1 cut(s) 345
BfaI CTAG 1 cut(s) 209
BisI GCNGC 2 cut(s) 284, 494
BlpI GCTNAGC 1 cut(s) 362
BlsI GCNGC 2 cut(s) 285, 495
Bme1390I CCNGG 9 cut(s) 33, 66, 190, 226, 301, 327, 466, 484, 586
Bme18I GGWCC 1 cut(s) 222
BmeT110I CYCGRG 1 cut(s) 308
BmgT120I GGNCC 4 cut(s) 222, 298, 463, 582
BmiI GGNNCC 2 cut(s) 224, 402
BmrFI CCNGG 9 cut(s) 33, 66, 190, 226, 301, 327, 466, 484, 586
Bpu10I CCTNAGC 1 cut(s) 350
Bpu1102I GCTNAGC 1 cut(s) 362
BpuMI CCSGG 8 cut(s) 66, 190, 226, 301, 327, 466, 484, 586
BsaBI GATNNNNATC 1 cut(s) 159
BsaHI GRCGYC 1 cut(s) 521
BsaJI CCNNGG 3 cut(s) 64, 218, 326
Bsc4I CCNNNNNNNGG 2 cut(s) 188, 219
Bse1I ACTGG 2 cut(s) 465, 547
Bse8I GATNNNNATC 1 cut(s) 159
BseBI CCWGG 1 cut(s) 33
BseDI CCNNGG 3 cut(s) 64, 218, 326
BseJI GATNNNNATC 1 cut(s) 159
BseLI CCNNNNNNNGG 2 cut(s) 188, 219
BseMII CTCAG 1 cut(s) 353
BseNI ACTGG 2 cut(s) 465, 547
BseRI GAGGAG 1 cut(s) 333
BseXI GCAGC 2 cut(s) 295, 480
Bsh1236I CGCG 2 cut(s) 259, 559
Bsh1285I CGRYCG 2 cut(s) 230, 257
BshFI GGCC 3 cut(s) 299, 464, 584
BshNI GGYRCC 1 cut(s) 400
BsiEI CGRYCG 2 cut(s) 230, 257
BsiHKCI CYCGRG 1 cut(s) 308
BsiSI CCGG 8 cut(s) 66, 189, 226, 301, 326, 466, 484, 585
BslFI GGGAC 1 cut(s) 538
BslI CCNNNNNNNGG 2 cut(s) 188, 219
BsmAI GTCTC 1 cut(s) 345
BsmFI GGGAC 1 cut(s) 538
BsnI GGCC 3 cut(s) 299, 464, 584
BsoBI CYCGRG 1 cut(s) 308
Bsp143I GATC 1 cut(s) 254
Bsp1720I GCTNAGC 1 cut(s) 362
BspACI CCGC 4 cut(s) 179, 268, 366, 557
BspANI GGCC 3 cut(s) 299, 464, 584
BspCNI CTCAG 1 cut(s) 354
BspFNI CGCG 2 cut(s) 259, 559
BspLI GGNNCC 2 cut(s) 224, 402
BspT107I GGYRCC 1 cut(s) 400
BsrBI CCGCTC 2 cut(s) 268, 366
BsrI ACTGG 2 cut(s) 465, 547
BssECI CCNNGG 3 cut(s) 64, 218, 326
BssMI GATC 1 cut(s) 254
BssNI GRCGYC 1 cut(s) 521
Bst2UI CCWGG 1 cut(s) 33
Bst4CI ACNGT 7 cut(s) 108, 114, 120, 132, 138, 400, 440
Bst6I CTCTTC 1 cut(s) 374
BstACI GRCGYC 1 cut(s) 521
BstC8I GCNNGC 1 cut(s) 297
BstDEI CTNAG 3 cut(s) 164, 350, 362
BstDSI CCRYGG 1 cut(s) 218
BstFNI CGCG 2 cut(s) 259, 559
BstKTI GATC 1 cut(s) 257
BstMAI GTCTC 1 cut(s) 345
BstMBI GATC 1 cut(s) 254
BstMCI CGRYCG 2 cut(s) 230, 257
BstMWI GCNNNNNNNGC 6 cut(s) 265, 280, 292, 301, 499, 581
BstNI CCWGG 1 cut(s) 33
BstSCI CCNGG 9 cut(s) 31, 64, 188, 224, 299, 325, 464, 482, 584
BstUI CGCG 2 cut(s) 259, 559
BstV1I GCAGC 2 cut(s) 295, 480
BstXI CCANNNNNNTGG 2 cut(s) 51, 295
BsuRI GGCC 3 cut(s) 299, 464, 584
BtgI CCRYGG 1 cut(s) 218
BtsIMutI CAGTG 1 cut(s) 458
Cac8I GCNNGC 1 cut(s) 297
Cfr13I GGNCC 4 cut(s) 222, 298, 463, 582
CseI GACGC 1 cut(s) 581
Csp6I GTAC 2 cut(s) 71, 401
CviJI RGCY 9 cut(s) 38, 188, 212, 217, 286, 299, 361, 464, 584
CviKI_1 RGCY 9 cut(s) 38, 188, 212, 217, 286, 299, 361, 464, 584
CviQI GTAC 2 cut(s) 71, 401
DdeI CTNAG 3 cut(s) 164, 350, 362
DpnI GATC 1 cut(s) 256
DpnII GATC 1 cut(s) 254
DrdI GACNNNNNNGTC 1 cut(s) 526
DseDI GACNNNNNNGTC 1 cut(s) 526
Eam1104I CTCTTC 1 cut(s) 374
EarI CTCTTC 1 cut(s) 374
Eco47I GGWCC 1 cut(s) 222
Eco88I CYCGRG 1 cut(s) 308
EcoRII CCWGG 1 cut(s) 31
FaiI YATR 2 cut(s) 18, 293
FaqI GGGAC 1 cut(s) 538
FauI CCCGC 2 cut(s) 359, 564
Fnu4HI GCNGC 2 cut(s) 284, 494
Fsp4HI GCNGC 2 cut(s) 284, 494
FspBI CTAG 1 cut(s) 209
GluI GCNGC 2 cut(s) 284, 494
HaeIII GGCC 3 cut(s) 299, 464, 584
HapII CCGG 8 cut(s) 66, 189, 226, 301, 326, 466, 484, 585
HgaI GACGC 1 cut(s) 581
Hin1I GRCGYC 1 cut(s) 521
HinfI GANTC 2 cut(s) 512, 594
HpaII CCGG 8 cut(s) 66, 189, 226, 301, 326, 466, 484, 585
HphI GGTGA 8 cut(s) 102, 108, 114, 120, 126, 132, 315, 507
Hpy188I TCNGA 4 cut(s) 265, 430, 448, 593
Hpy99I CGWCG 2 cut(s) 523, 526
HpyAV CCTTC 1 cut(s) 367
HpyCH4III ACNGT 7 cut(s) 108, 114, 120, 132, 138, 400, 440
HpyCH4IV ACGT 1 cut(s) 521
HpyCH4V TGCA 2 cut(s) 248, 392
HpyF10VI GCNNNNNNNGC 6 cut(s) 265, 280, 292, 301, 499, 581
HpyF3I CTNAG 3 cut(s) 164, 350, 362
HpySE526I ACGT 1 cut(s) 521
Hsp92I GRCGYC 1 cut(s) 521
KpnI GGTACC 1 cut(s) 404
Kzo9I GATC 1 cut(s) 254
LmnI GCTCC 1 cut(s) 35
Lsp1109I GCAGC 2 cut(s) 295, 480
MaeI CTAG 1 cut(s) 209
MaeII ACGT 1 cut(s) 521
MaeIII GTNAC 8 cut(s) 108, 114, 120, 132, 138, 321, 509, 569
MalI GATC 1 cut(s) 256
MbiI CCGCTC 2 cut(s) 268, 366
MboI GATC 1 cut(s) 254
MboII GAAGA 3 cut(s) 382, 391, 471
MlyI GAGTC 2 cut(s) 506, 588
MmeI TCCRAC 1 cut(s) 106
MnlI CCTC 3 cut(s) 180, 216, 354
MslI CAYNNNNRTG 2 cut(s) 49, 328
MspI CCGG 8 cut(s) 66, 189, 226, 301, 326, 466, 484, 585
MspR9I CCNGG 9 cut(s) 33, 66, 190, 226, 301, 327, 466, 484, 586
MvaI CCWGG 1 cut(s) 33
MvnI CGCG 2 cut(s) 259, 559
MwoI GCNNNNNNNGC 6 cut(s) 265, 280, 292, 301, 499, 581
NciI CCSGG 8 cut(s) 66, 190, 226, 301, 327, 466, 484, 586
NdeII GATC 1 cut(s) 254
NlaIV GGNNCC 2 cut(s) 224, 402
NmeAIII GCCGAG 1 cut(s) 238
NmuCI GTSAC 8 cut(s) 108, 114, 120, 132, 138, 321, 509, 569
OliI CACNNNNGTG 1 cut(s) 328
PcsI WCGNNNNNNNCGW 2 cut(s) 527, 536
PflFI GACNNNGTC 1 cut(s) 226
PfoI TCCNGGA 1 cut(s) 482
PkrI GCNGC 2 cut(s) 285, 495
Ple19I CGATCG 1 cut(s) 257
PleI GAGTC 2 cut(s) 506, 588
PpsI GAGTC 2 cut(s) 506, 588
Psp6I CCWGG 1 cut(s) 31
PspGI CCWGG 1 cut(s) 31
PspN4I GGNNCC 2 cut(s) 224, 402
PspPI GGNCC 4 cut(s) 222, 298, 463, 582
PsyI GACNNNGTC 1 cut(s) 226
PvuI CGATCG 1 cut(s) 257
RsaI GTAC 2 cut(s) 72, 402
RsaNI GTAC 2 cut(s) 71, 401
RseI CAYNNNNRTG 2 cut(s) 49, 328
SatI GCNGC 2 cut(s) 284, 494
Sau3AI GATC 1 cut(s) 254
Sau96I GGNCC 4 cut(s) 222, 298, 463, 582
SchI GAGTC 2 cut(s) 506, 588
ScrFI CCNGG 9 cut(s) 33, 66, 190, 226, 301, 327, 466, 484, 586
SetI ASST 4 cut(s) 40, 363, 453, 524
SinI GGWCC 1 cut(s) 222
SmiMI CAYNNNNRTG 2 cut(s) 49, 328
SsiI CCGC 4 cut(s) 179, 268, 366, 557
SspMI CTAG 1 cut(s) 209
StyD4I CCNGG 9 cut(s) 31, 64, 188, 224, 299, 325, 464, 482, 584
TaaI ACNGT 7 cut(s) 108, 114, 120, 132, 138, 400, 440
TaiI ACGT 1 cut(s) 524
TaqI TCGA 1 cut(s) 524
TscAI CASTG 1 cut(s) 465
TseFI GTSAC 8 cut(s) 108, 114, 120, 132, 138, 321, 509, 569
TseI GCWGC 2 cut(s) 283, 493
Tsp45I GTSAC 8 cut(s) 108, 114, 120, 132, 138, 321, 509, 569
TspGWI ACGGA 2 cut(s) 235, 497
TspRI CASTG 1 cut(s) 465
Tth111I GACNNNGTC 1 cut(s) 226
VpaK11BI GGWCC 1 cut(s) 222
XspI CTAG 1 cut(s) 209
ZraI GACGTC 1 cut(s) 522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.