Rh6BG381700

BEST Arabidopsis thaliana protein match is hydroxyproline-rich glycoprotein family protein (TAIR AT1G21695.1)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0016594
Physical Location & Seq
Reverse (-)
61054627 .. 61055866
1240 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG381700.1

Sequence Viewer

Length: 579 bp
ATGGCGATTGATGAGTATGATTTCACAAAACCAGGAGCTATCCCATTTCAATGGGAAATACGCCCCGGCGTACCCAAAGTCCAACACCAAAAACAACCACCACCACCACCACCGTCACCGCCACCGCCACCACAAACTTGTGATTACGATCTTAGTCCTCTCAAACCGCCACCAGCCGGGTTCGTTTTCGTGCCTCTAGCCGAGCCACGGACCCGGTCGTTTCGTTTGGGTTCTGCAACCCGATCGCGTTCAGAGCGGTGGCGGTTTGAGCAGCCCAATATGCTGGCCCGGCGACCTGAGATTGTTTCGTCACCGGGGTGCTTCTTGTCTCCTCTGCTAAGGAGAAAGCTGAGCGGGAAAAAGGGCAAAAGTGGTGGTGCAAGAACGGTACCCGAACCCGAACCCGAACCCGACTGCAGTTCTGACCTTGAAACACTGGCCCGGTGGTCGCTTTCTTCCCGGAAATCGCTGCTTTCGCCGTTCCGTGACTCACCGACGTCGATGTCGTCGTACTCGTCCTACCAGTCGTCCCCGCGACCCGTAAGTGACGCAGAGTGGGCCGGGTTCGGACTCTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF688

Protein Analysis

192

Amino Acids

21.33

Weight (kDa)

9.58

Isoelectric Point (pI)

94.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016594)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21695 AT1G77400
fragaria_vesca FvH4_2g27560
malus_domestica MD15G1344600.v1.1
prunus_persica Prupe.1G492300_v2.0.a1
pyrus_communis pycom15g30780
rosa_chinensis RchiOBHm_Chr6g0296401
rosa_laevigata RLG00000011696
rosa_roxburghii Rroxscaffold_7G00171580 Rroxscaffold_7G00178530
rosa_rugosa Rorug06G0262000
rosa_samantha Rh6BG381700 Rh6DG374300
rosa_wichuraiana Rw6G032560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 502
AatII GACGTC 1 cut(s) 500
Acc65I GGTACC 1 cut(s) 388
AccB1I GGYRCC 1 cut(s) 388
AccBSI CCGCTC 2 cut(s) 256, 354
AccII CGCG 2 cut(s) 247, 535
AciI CCGC 7 cut(s) 119, 125, 167, 256, 262, 354, 533
AcyI GRCGYC 1 cut(s) 497
AfaI GTAC 3 cut(s) 72, 390, 512
AfiI CCNNNNNNNGG 2 cut(s) 176, 207
AgsI TTSAA 2 cut(s) 50, 431
AjnI CCWGG 1 cut(s) 31
AleI CACNNNNGTG 1 cut(s) 316
AluBI AGCT 2 cut(s) 38, 349
AluI AGCT 2 cut(s) 38, 349
Alw26I GTCTC 1 cut(s) 333
AoxI GGCC 3 cut(s) 285, 438, 558
ApeKI GCWGC 2 cut(s) 271, 469
Asp718I GGTACC 1 cut(s) 388
AspS9I GGNCC 4 cut(s) 210, 286, 439, 558
AsuC2I CCSGG 8 cut(s) 66, 178, 214, 289, 315, 442, 460, 562
AsuHPI GGTGA 3 cut(s) 108, 303, 483
AvaII GGWCC 1 cut(s) 210
BanI GGYRCC 1 cut(s) 388
BbvI GCAGC 2 cut(s) 283, 456
BceAI ACGGC 1 cut(s) 463
BcgI CGANNNNNNTGC 2 cut(s) 225, 259
BciT130I CCWGG 1 cut(s) 33
BcnI CCSGG 8 cut(s) 66, 178, 214, 289, 315, 442, 460, 562
BcoDI GTCTC 1 cut(s) 333
BfaI CTAG 1 cut(s) 197
BfmI CTRYAG 1 cut(s) 415
BisI GCNGC 2 cut(s) 272, 470
BlpI GCTNAGC 1 cut(s) 350
BlsI GCNGC 2 cut(s) 273, 471
Bme1390I CCNGG 9 cut(s) 33, 66, 178, 214, 289, 315, 442, 460, 562
Bme18I GGWCC 1 cut(s) 210
BmgT120I GGNCC 4 cut(s) 210, 286, 439, 558
BmiI GGNNCC 2 cut(s) 212, 390
BmrFI CCNGG 9 cut(s) 33, 66, 178, 214, 289, 315, 442, 460, 562
Bpu10I CCTNAGC 1 cut(s) 338
Bpu1102I GCTNAGC 1 cut(s) 350
BpuMI CCSGG 8 cut(s) 66, 178, 214, 289, 315, 442, 460, 562
BsaBI GATNNNNATC 1 cut(s) 147
BsaHI GRCGYC 1 cut(s) 497
BsaJI CCNNGG 3 cut(s) 64, 206, 314
Bsc4I CCNNNNNNNGG 2 cut(s) 176, 207
Bse1I ACTGG 2 cut(s) 441, 523
Bse8I GATNNNNATC 1 cut(s) 147
BseBI CCWGG 1 cut(s) 33
BseDI CCNNGG 3 cut(s) 64, 206, 314
BseJI GATNNNNATC 1 cut(s) 147
BseLI CCNNNNNNNGG 2 cut(s) 176, 207
BseMII CTCAG 2 cut(s) 288, 341
BseNI ACTGG 2 cut(s) 441, 523
BseRI GAGGAG 1 cut(s) 321
BseXI GCAGC 2 cut(s) 283, 456
Bsh1236I CGCG 2 cut(s) 247, 535
Bsh1285I CGRYCG 2 cut(s) 218, 245
BshFI GGCC 3 cut(s) 287, 440, 560
BshNI GGYRCC 1 cut(s) 388
BsiEI CGRYCG 2 cut(s) 218, 245
BsiSI CCGG 8 cut(s) 66, 177, 214, 289, 314, 442, 460, 561
BslFI GGGAC 1 cut(s) 514
BslI CCNNNNNNNGG 2 cut(s) 176, 207
BsmAI GTCTC 1 cut(s) 333
BsmFI GGGAC 1 cut(s) 514
BsnI GGCC 3 cut(s) 287, 440, 560
Bsp143I GATC 2 cut(s) 148, 242
Bsp1720I GCTNAGC 1 cut(s) 350
BspACI CCGC 7 cut(s) 119, 125, 167, 256, 262, 354, 533
BspANI GGCC 3 cut(s) 287, 440, 560
BspCNI CTCAG 2 cut(s) 289, 342
BspFNI CGCG 2 cut(s) 247, 535
BspLI GGNNCC 2 cut(s) 212, 390
BspMAI CTGCAG 1 cut(s) 419
BspT107I GGYRCC 1 cut(s) 388
BsrBI CCGCTC 2 cut(s) 256, 354
BsrI ACTGG 2 cut(s) 441, 523
BssECI CCNNGG 3 cut(s) 64, 206, 314
BssMI GATC 2 cut(s) 148, 242
BssNI GRCGYC 1 cut(s) 497
Bst2UI CCWGG 1 cut(s) 33
Bst4CI ACNGT 2 cut(s) 114, 388
BstACI GRCGYC 1 cut(s) 497
BstC8I GCNNGC 1 cut(s) 285
BstDEI CTNAG 4 cut(s) 152, 297, 338, 350
BstDSI CCRYGG 1 cut(s) 206
BstFNI CGCG 2 cut(s) 247, 535
BstKTI GATC 2 cut(s) 151, 245
BstMAI GTCTC 1 cut(s) 333
BstMBI GATC 2 cut(s) 148, 242
BstMCI CGRYCG 2 cut(s) 218, 245
BstMWI GCNNNNNNNGC 6 cut(s) 253, 268, 280, 289, 475, 557
BstNI CCWGG 1 cut(s) 33
BstSCI CCNGG 9 cut(s) 31, 64, 176, 212, 287, 313, 440, 458, 560
BstSFI CTRYAG 1 cut(s) 415
BstUI CGCG 2 cut(s) 247, 535
BstV1I GCAGC 2 cut(s) 283, 456
BstXI CCANNNNNNTGG 2 cut(s) 51, 283
BsuRI GGCC 3 cut(s) 287, 440, 560
BtgI CCRYGG 1 cut(s) 206
BtsIMutI CAGTG 1 cut(s) 434
Cac8I GCNNGC 1 cut(s) 285
Cfr13I GGNCC 4 cut(s) 210, 286, 439, 558
CseI GACGC 1 cut(s) 557
Csp6I GTAC 3 cut(s) 71, 389, 511
CspCI CAANNNNNGTGG 2 cut(s) 355, 390
CviJI RGCY 9 cut(s) 38, 176, 200, 205, 274, 287, 349, 440, 560
CviKI_1 RGCY 9 cut(s) 38, 176, 200, 205, 274, 287, 349, 440, 560
CviQI GTAC 3 cut(s) 71, 389, 511
DdeI CTNAG 4 cut(s) 152, 297, 338, 350
DpnI GATC 2 cut(s) 150, 244
DpnII GATC 2 cut(s) 148, 242
DrdI GACNNNNNNGTC 1 cut(s) 502
DseDI GACNNNNNNGTC 1 cut(s) 502
Eco47I GGWCC 1 cut(s) 210
EcoRII CCWGG 1 cut(s) 31
FaiI YATR 2 cut(s) 18, 281
FaqI GGGAC 1 cut(s) 514
FauI CCCGC 2 cut(s) 347, 540
Fnu4HI GCNGC 2 cut(s) 272, 470
Fsp4HI GCNGC 2 cut(s) 272, 470
FspBI CTAG 1 cut(s) 197
GluI GCNGC 2 cut(s) 272, 470
HaeIII GGCC 3 cut(s) 287, 440, 560
HapII CCGG 8 cut(s) 66, 177, 214, 289, 314, 442, 460, 561
HgaI GACGC 1 cut(s) 557
Hin1I GRCGYC 1 cut(s) 497
HinfI GANTC 2 cut(s) 488, 570
HpaII CCGG 8 cut(s) 66, 177, 214, 289, 314, 442, 460, 561
HphI GGTGA 3 cut(s) 108, 303, 483
Hpy188I TCNGA 3 cut(s) 253, 424, 569
Hpy99I CGWCG 3 cut(s) 499, 502, 511
HpyCH4III ACNGT 2 cut(s) 114, 388
HpyCH4IV ACGT 1 cut(s) 497
HpyCH4V TGCA 3 cut(s) 236, 380, 417
HpyF10VI GCNNNNNNNGC 6 cut(s) 253, 268, 280, 289, 475, 557
HpyF3I CTNAG 4 cut(s) 152, 297, 338, 350
HpySE526I ACGT 1 cut(s) 497
Hsp92I GRCGYC 1 cut(s) 497
KpnI GGTACC 1 cut(s) 392
Kzo9I GATC 2 cut(s) 148, 242
LmnI GCTCC 1 cut(s) 35
Lsp1109I GCAGC 2 cut(s) 283, 456
MaeI CTAG 1 cut(s) 197
MaeII ACGT 1 cut(s) 497
MaeIII GTNAC 4 cut(s) 114, 309, 485, 545
MalI GATC 2 cut(s) 150, 244
MbiI CCGCTC 2 cut(s) 256, 354
MboI GATC 2 cut(s) 148, 242
MboII GAAGA 1 cut(s) 447
MlyI GAGTC 2 cut(s) 482, 564
MmeI TCCRAC 1 cut(s) 106
MnlI CCTC 3 cut(s) 168, 204, 342
MslI CAYNNNNRTG 2 cut(s) 49, 316
MspI CCGG 8 cut(s) 66, 177, 214, 289, 314, 442, 460, 561
MspR9I CCNGG 9 cut(s) 33, 66, 178, 214, 289, 315, 442, 460, 562
MvaI CCWGG 1 cut(s) 33
MvnI CGCG 2 cut(s) 247, 535
MwoI GCNNNNNNNGC 6 cut(s) 253, 268, 280, 289, 475, 557
NciI CCSGG 8 cut(s) 66, 178, 214, 289, 315, 442, 460, 562
NdeII GATC 2 cut(s) 148, 242
NlaIV GGNNCC 2 cut(s) 212, 390
NmeAIII GCCGAG 1 cut(s) 226
NmuCI GTSAC 4 cut(s) 114, 309, 485, 545
OliI CACNNNNGTG 1 cut(s) 316
PcsI WCGNNNNNNNCGW 3 cut(s) 503, 506, 512
PflFI GACNNNGTC 1 cut(s) 214
PfoI TCCNGGA 1 cut(s) 458
PkrI GCNGC 2 cut(s) 273, 471
Ple19I CGATCG 1 cut(s) 245
PleI GAGTC 2 cut(s) 482, 564
PpsI GAGTC 2 cut(s) 482, 564
Psp6I CCWGG 1 cut(s) 31
PspGI CCWGG 1 cut(s) 31
PspN4I GGNNCC 2 cut(s) 212, 390
PspPI GGNCC 4 cut(s) 210, 286, 439, 558
PstI CTGCAG 1 cut(s) 419
PsyI GACNNNGTC 1 cut(s) 214
PvuI CGATCG 1 cut(s) 245
RsaI GTAC 3 cut(s) 72, 390, 512
RsaNI GTAC 3 cut(s) 71, 389, 511
RseI CAYNNNNRTG 2 cut(s) 49, 316
SatI GCNGC 2 cut(s) 272, 470
Sau3AI GATC 2 cut(s) 148, 242
Sau96I GGNCC 4 cut(s) 210, 286, 439, 558
SchI GAGTC 2 cut(s) 482, 564
ScrFI CCNGG 9 cut(s) 33, 66, 178, 214, 289, 315, 442, 460, 562
SetI ASST 5 cut(s) 40, 298, 351, 429, 500
SfcI CTRYAG 1 cut(s) 415
SinI GGWCC 1 cut(s) 210
SmiMI CAYNNNNRTG 2 cut(s) 49, 316
SsiI CCGC 7 cut(s) 119, 125, 167, 256, 262, 354, 533
SspMI CTAG 1 cut(s) 197
StyD4I CCNGG 9 cut(s) 31, 64, 176, 212, 287, 313, 440, 458, 560
TaaI ACNGT 2 cut(s) 114, 388
TaiI ACGT 1 cut(s) 500
TaqI TCGA 1 cut(s) 500
TscAI CASTG 1 cut(s) 441
TseFI GTSAC 4 cut(s) 114, 309, 485, 545
TseI GCWGC 2 cut(s) 271, 469
Tsp45I GTSAC 4 cut(s) 114, 309, 485, 545
TspGWI ACGGA 2 cut(s) 223, 473
TspRI CASTG 1 cut(s) 441
Tth111I GACNNNGTC 1 cut(s) 214
VpaK11BI GGWCC 1 cut(s) 210
XspI CTAG 1 cut(s) 197
ZraI GACGTC 1 cut(s) 498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.