AT1G22330

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0008508
Physical Location & Seq
Forward (+)
7886323 .. 7889534
3212 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G22330.1

Sequence Viewer

Length: 876 bp
ATGTCTAATACAAGCTATTACCGATCACCGTTCGGAGACACGACTCACACCAAAGTGTTTGTAGGAGGTTTAGCATGGGAGACTCCCACCGATGAAATGCGCCGTTACTTTGATCAGTTCGGAGAGATTCTTGAAGCCGTCATCATTACCGATAAGGCTACCGGAAAATCTAAAGGCTACGGTTTTGTCACGTTTCGAGACTCGGATTCAGCGACGAGAGCCGTCGCTGATCCGAATCCGGTGATCGATGGACGAAAGGCAAATTGCAATATTGCGTCTTTTGGACGGCCCCGACCATCGACGCCTCGAGGACGAGGACAAGGAGGAAGCCCTAGTCAGTATCAAGGCGGAGGACAATCAAGCTATACCGGAATGGCTGCTCCGGTGCAGCAGGCTGCGGCTGCCCAGCTCATGTATCCGTCATACGGGTACACCTACAATTCTGAATATGGGTACCACCAAGCCCTATACAACGCACAGCTCCAACAGGCACAATACTATCAACAGCAAATGTACGGAGGAGGAGGAGCAACATCACCATCATCATCCAACATCATGCCTTCCCCTTATTACTACCTCCAAGCTCCAAGCCCTAGACCATATCTTCATCATCAACAACATTATCAATATCACCATCATCAGCAGCAGCAGCAACAACAACAACAACGTTTACCTTCTGCTTCATCTTACCTAATTTACCCATCCAATGTCGAGGCTCCTACTCCATCTAATGTCCCTACTTCCCAAGGGCCACTATCTTCTTCCACTGAATCACACGCACCACAACAAGTATCAGAAGAAGGTGGAGAATTCGATCCAACGGATGCACCTGAAAGTACGACTACGAACATCAGAGACTTAACGTCATCTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000381 GO:0001501 GO:0001756 GO:0001947 GO:0002009 GO:0003002 GO:0003007 GO:0003143 GO:0003228 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006417 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0007368 GO:0007389 GO:0007507 GO:0007517 GO:0007519 GO:0008150 GO:0008152 GO:0009653 GO:0009790 GO:0009792 GO:0009799 GO:0009855 GO:0009887 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009896 GO:0009952 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010638 GO:0010720 GO:0010830 GO:0010831 GO:0014706 GO:0016070 GO:0016071 GO:0016202 GO:0017091 GO:0017148 GO:0019219 GO:0019222 GO:0022603 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031330 GO:0031331 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032956 GO:0032970 GO:0033043 GO:0033554 GO:0034248 GO:0034249 GO:0034641 GO:0035050 GO:0035239 GO:0035282 GO:0035295 GO:0035925 GO:0036002 GO:0043009 GO:0043170 GO:0043484 GO:0043487 GO:0043488 GO:0043489 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0045595 GO:0045597 GO:0045661 GO:0045663 GO:0045844 GO:0045934 GO:0045935 GO:0046483 GO:0048024 GO:0048255 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048562 GO:0048568 GO:0048598 GO:0048634 GO:0048636 GO:0048641 GO:0048643 GO:0048646 GO:0048701 GO:0048702 GO:0048704 GO:0048705 GO:0048706 GO:0048729 GO:0048731 GO:0048856 GO:0050684 GO:0050779 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051147 GO:0051149 GO:0051153 GO:0051155 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051493 GO:0051495 GO:0051716 GO:0060255 GO:0060284 GO:0060297 GO:0060298 GO:0060429 GO:0060537 GO:0060538 GO:0060562 GO:0061013 GO:0061014 GO:0061053 GO:0061061 GO:0061157 GO:0061158 GO:0061371 GO:0065007 GO:0065008 GO:0071704 GO:0072358 GO:0072359 GO:0080090 GO:0090304 GO:0097157 GO:0097159 GO:0110020 GO:1901360 GO:1901363 GO:1901861 GO:1901863 GO:1902115 GO:1902117 GO:1902369 GO:1902373 GO:1902809 GO:1902811 GO:1902903 GO:1902905 GO:1903311 GO:1903312 GO:1903313 GO:1904888 GO:1905868 GO:1905870 GO:1990715 GO:1990825 GO:2000026 GO:2000112 GO:2000113 GO:2000736 GO:2000738 GO:2000765 GO:2000766 GO:2001014 GO:2001016
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

291

Amino Acids

31.98

Weight (kDa)

6.12

Isoelectric Point (pI)

71.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 19 - 76 5.9e-17 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 306
Acc65I GGTACC 1 cut(s) 453
AccB1I GGYRCC 1 cut(s) 453
AciI CCGC 2 cut(s) 348, 398
AclI AACGTT 1 cut(s) 667
AclWI GGATC 2 cut(s) 224, 809
AcsI RAATTY 1 cut(s) 809
AcyI GRCGYC 1 cut(s) 302
AfaI GTAC 4 cut(s) 431, 455, 515, 838
AfiI CCNNNNNNNGG 1 cut(s) 425
AgsI TTSAA 1 cut(s) 134
AhdI GACNNNNNGTC 1 cut(s) 862
AleI CACNNNNGTG 1 cut(s) 53
AluBI AGCT 5 cut(s) 15, 363, 409, 481, 584
AluI AGCT 5 cut(s) 15, 363, 409, 481, 584
Alw26I GTCTC 4 cut(s) 30, 74, 192, 849
AlwI GGATC 2 cut(s) 224, 809
Ama87I CYCGRG 1 cut(s) 306
AoxI GGCC 2 cut(s) 287, 749
ApeKI GCWGC 7 cut(s) 377, 388, 395, 401, 643, 646, 649
ApoI RAATTY 1 cut(s) 809
Asp718I GGTACC 1 cut(s) 453
AspLEI GCGC 1 cut(s) 102
AspS9I GGNCC 2 cut(s) 288, 749
AsuHPI GGTGA 4 cut(s) 18, 253, 528, 623
AvaI CYCGRG 1 cut(s) 306
BanI GGYRCC 1 cut(s) 453
BbvI GCAGC 7 cut(s) 364, 382, 388, 400, 655, 658, 661
BccI CCATC 6 cut(s) 242, 304, 547, 642, 709, 733
BceAI ACGGC 4 cut(s) 87, 122, 206, 302
BciVI GTATCC 1 cut(s) 426
BclI TGATCA 1 cut(s) 112
BcoDI GTCTC 4 cut(s) 30, 74, 192, 849
BfaI CTAG 2 cut(s) 333, 594
BfuI GTATCC 1 cut(s) 426
BisI GCNGC 8 cut(s) 378, 389, 396, 399, 402, 644, 647, 650
BlsI GCNGC 8 cut(s) 379, 390, 397, 400, 403, 645, 648, 651
BmeRI GACNNNNNGTC 1 cut(s) 862
BmeT110I CYCGRG 1 cut(s) 306
BmgT120I GGNCC 2 cut(s) 288, 749
BmiI GGNNCC 3 cut(s) 290, 455, 717
BmsI GCATC 1 cut(s) 814
Bsa29I ATCGAT 1 cut(s) 246
BsaBI GATNNNNATC 1 cut(s) 234
BsaHI GRCGYC 1 cut(s) 302
BsaJI CCNNGG 1 cut(s) 745
BsaWI WCCGGW 4 cut(s) 161, 238, 368, 382
Bsc4I CCNNNNNNNGG 1 cut(s) 425
Bse8I GATNNNNATC 1 cut(s) 234
BseCI ATCGAT 1 cut(s) 246
BseDI CCNNGG 1 cut(s) 745
BseGI GGATG 3 cut(s) 545, 701, 829
BseJI GATNNNNATC 1 cut(s) 234
BseLI CCNNNNNNNGG 1 cut(s) 425
BseRI GAGGAG 3 cut(s) 534, 537, 540
BseXI GCAGC 7 cut(s) 364, 382, 388, 400, 655, 658, 661
BseYI CCCAGC 1 cut(s) 405
BsgI GTGCAG 1 cut(s) 407
BshFI GGCC 2 cut(s) 289, 751
BshNI GGYRCC 1 cut(s) 453
BshVI ATCGAT 1 cut(s) 246
BsiHKCI CYCGRG 1 cut(s) 306
BsiSI CCGG 4 cut(s) 162, 239, 369, 383
BslFI GGGAC 1 cut(s) 719
BslI CCNNNNNNNGG 1 cut(s) 425
BsmAI GTCTC 4 cut(s) 30, 74, 192, 849
BsmFI GGGAC 1 cut(s) 719
BsnI GGCC 2 cut(s) 289, 751
BsoBI CYCGRG 1 cut(s) 306
Bsp143I GATC 5 cut(s) 23, 112, 229, 243, 814
BspACI CCGC 2 cut(s) 348, 398
BspANI GGCC 2 cut(s) 289, 751
BspDI ATCGAT 1 cut(s) 246
BspLI GGNNCC 3 cut(s) 290, 455, 717
BspPI GGATC 2 cut(s) 224, 809
BspT107I GGYRCC 1 cut(s) 453
BssECI CCNNGG 1 cut(s) 745
BssMI GATC 5 cut(s) 23, 112, 229, 243, 814
BssNI GRCGYC 1 cut(s) 302
BssT1I CCWWGG 1 cut(s) 745
Bst4CI ACNGT 2 cut(s) 30, 182
BstACI GRCGYC 1 cut(s) 302
BstC8I GCNNGC 1 cut(s) 393
BstF5I GGATG 3 cut(s) 545, 701, 829
BstHHI GCGC 1 cut(s) 102
BstKTI GATC 5 cut(s) 26, 115, 232, 246, 817
BstMAI GTCTC 4 cut(s) 30, 74, 192, 849
BstMBI GATC 5 cut(s) 23, 112, 229, 243, 814
BstMWI GCNNNNNNNGC 3 cut(s) 218, 401, 649
BstV1I GCAGC 7 cut(s) 364, 382, 388, 400, 655, 658, 661
Bsu15I ATCGAT 1 cut(s) 246
BsuI GTATCC 1 cut(s) 426
BsuRI GGCC 2 cut(s) 289, 751
BsuTUI ATCGAT 1 cut(s) 246
BtsCI GGATG 3 cut(s) 545, 701, 829
BtsIMutI CAGTG 1 cut(s) 765
Cac8I GCNNGC 1 cut(s) 393
CfoI GCGC 1 cut(s) 102
Cfr13I GGNCC 2 cut(s) 288, 749
ClaI ATCGAT 1 cut(s) 246
CseI GACGC 2 cut(s) 264, 310
Csp6I GTAC 4 cut(s) 430, 454, 514, 837
CviAII CATG 3 cut(s) 75, 412, 556
CviQI GTAC 4 cut(s) 430, 454, 514, 837
DpnI GATC 5 cut(s) 25, 114, 231, 245, 816
DpnII GATC 5 cut(s) 23, 112, 229, 243, 814
DriI GACNNNNNGTC 1 cut(s) 862
Eam1105I GACNNNNNGTC 1 cut(s) 862
EciI GGCGGA 1 cut(s) 363
Eco130I CCWWGG 1 cut(s) 745
Eco88I CYCGRG 1 cut(s) 306
EcoRI GAATTC 1 cut(s) 809
EcoT14I CCWWGG 1 cut(s) 745
ErhI CCWWGG 1 cut(s) 745
FaeI CATG 3 cut(s) 78, 415, 559
FaiI YATR 8 cut(s) 76, 366, 413, 424, 450, 469, 557, 601
FaqI GGGAC 1 cut(s) 719
FatI CATG 3 cut(s) 74, 411, 555
FbaI TGATCA 1 cut(s) 112
Fnu4HI GCNGC 8 cut(s) 378, 389, 396, 399, 402, 644, 647, 650
FokI GGATG 3 cut(s) 532, 688, 836
Fsp4HI GCNGC 8 cut(s) 378, 389, 396, 399, 402, 644, 647, 650
FspBI CTAG 2 cut(s) 333, 594
GlaI GCGC 1 cut(s) 101
GluI GCNGC 8 cut(s) 378, 389, 396, 399, 402, 644, 647, 650
GsaI CCCAGC 1 cut(s) 409
HaeIII GGCC 2 cut(s) 289, 751
HapII CCGG 4 cut(s) 162, 239, 369, 383
HgaI GACGC 2 cut(s) 264, 310
HhaI GCGC 1 cut(s) 102
Hin1I GRCGYC 1 cut(s) 302
Hin1II CATG 3 cut(s) 78, 415, 559
Hin6I GCGC 1 cut(s) 100
HinP1I GCGC 1 cut(s) 100
HinfI GANTC 7 cut(s) 43, 82, 127, 200, 206, 235, 770
HpaII CCGG 4 cut(s) 162, 239, 369, 383
HphI GGTGA 4 cut(s) 18, 253, 528, 623
Hpy166II GTNNAC 2 cut(s) 432, 671
Hpy188I TCNGA 7 cut(s) 35, 122, 205, 234, 445, 796, 854
Hpy188III TCNNGA 3 cut(s) 131, 197, 873
Hpy8I GTNNAC 2 cut(s) 432, 671
Hpy99I CGWCG 3 cut(s) 217, 227, 304
HpyAV CCTTC 3 cut(s) 570, 684, 794
HpyCH4III ACNGT 2 cut(s) 30, 182
HpyCH4IV ACGT 3 cut(s) 191, 667, 863
HpyCH4V TGCA 3 cut(s) 267, 388, 827
HpyF10VI GCNNNNNNNGC 3 cut(s) 218, 401, 649
HpySE526I ACGT 3 cut(s) 191, 667, 863
Hsp92I GRCGYC 1 cut(s) 302
Hsp92II CATG 3 cut(s) 78, 415, 559
HspAI GCGC 1 cut(s) 100
KpnI GGTACC 1 cut(s) 457
Ksp22I TGATCA 1 cut(s) 112
Kzo9I GATC 5 cut(s) 23, 112, 229, 243, 814
LmnI GCTCC 5 cut(s) 385, 486, 527, 589, 721
LpnPI CCDG 8 cut(s) 175, 252, 377, 382, 396, 419, 473, 843
Lsp1109I GCAGC 7 cut(s) 364, 382, 388, 400, 655, 658, 661
LweI GCATC 1 cut(s) 814
MaeI CTAG 2 cut(s) 333, 594
MaeII ACGT 3 cut(s) 191, 667, 863
MaeIII GTNAC 2 cut(s) 104, 187
MalI GATC 5 cut(s) 25, 114, 231, 245, 816
MboI GATC 5 cut(s) 23, 112, 229, 243, 814
MboII GAAGA 5 cut(s) 596, 750, 753, 809, 861
MluCI AATT 4 cut(s) 262, 439, 693, 809
MlyI GAGTC 3 cut(s) 37, 76, 194
MmeI TCCRAC 3 cut(s) 508, 573, 842
MseI TTAA 1 cut(s) 860
MslI CAYNNNNRTG 1 cut(s) 53
MspI CCGG 4 cut(s) 162, 239, 369, 383
MwoI GCNNNNNNNGC 3 cut(s) 218, 401, 649
NdeII GATC 5 cut(s) 23, 112, 229, 243, 814
NlaIII CATG 3 cut(s) 78, 415, 559
NlaIV GGNNCC 3 cut(s) 290, 455, 717
NmuCI GTSAC 1 cut(s) 187
OliI CACNNNNGTG 1 cut(s) 53
PaeR7I CTCGAG 1 cut(s) 306
PcsI WCGNNNNNNNCGW 1 cut(s) 209
PfeI GAWTC 4 cut(s) 127, 206, 235, 770
PkrI GCNGC 8 cut(s) 379, 390, 397, 400, 403, 645, 648, 651
PleI GAGTC 3 cut(s) 37, 76, 194
PpsI GAGTC 3 cut(s) 37, 76, 194
Psp1406I AACGTT 1 cut(s) 667
PspFI CCCAGC 1 cut(s) 405
PspN4I GGNNCC 3 cut(s) 290, 455, 717
PspPI GGNCC 2 cut(s) 288, 749
PspXI VCTCGAGB 1 cut(s) 306
RsaI GTAC 4 cut(s) 431, 455, 515, 838
RsaNI GTAC 4 cut(s) 430, 454, 514, 837
RseI CAYNNNNRTG 1 cut(s) 53
SaqAI TTAA 1 cut(s) 860
SatI GCNGC 8 cut(s) 378, 389, 396, 399, 402, 644, 647, 650
Sau3AI GATC 5 cut(s) 23, 112, 229, 243, 814
Sau96I GGNCC 2 cut(s) 288, 749
SchI GAGTC 3 cut(s) 37, 76, 194
SfaNI GCATC 1 cut(s) 814
Sfr274I CTCGAG 1 cut(s) 306
SlaI CTCGAG 1 cut(s) 306
SmiMI CAYNNNNRTG 1 cut(s) 53
SmlI CTYRAG 1 cut(s) 306
SmoI CTYRAG 1 cut(s) 306
Sse9I AATT 4 cut(s) 262, 439, 693, 809
SsiI CCGC 2 cut(s) 348, 398
SspI AATATT 1 cut(s) 271
SspMI CTAG 2 cut(s) 333, 594
StyI CCWWGG 1 cut(s) 745
TaaI ACNGT 2 cut(s) 30, 182
TaiI ACGT 3 cut(s) 194, 670, 866
TaqI TCGA 6 cut(s) 196, 246, 299, 307, 711, 813
TasI AATT 4 cut(s) 262, 439, 693, 809
TauI GCSGC 1 cut(s) 401
TfiI GAWTC 4 cut(s) 127, 206, 235, 770
Tru1I TTAA 1 cut(s) 860
Tru9I TTAA 1 cut(s) 860
TscAI CASTG 1 cut(s) 772
TseFI GTSAC 1 cut(s) 187
TseI GCWGC 7 cut(s) 377, 388, 395, 401, 643, 646, 649
Tsp45I GTSAC 1 cut(s) 187
TspDTI ATGAA 3 cut(s) 108, 596, 672
TspGWI ACGGA 3 cut(s) 408, 531, 836
TspRI CASTG 1 cut(s) 772
XapI RAATTY 1 cut(s) 809
XhoI CTCGAG 1 cut(s) 306
XspI CTAG 2 cut(s) 333, 594
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.