Prupe.1G519200_v2.0.a1

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0008508
Physical Location & Seq
Forward (+)
42638600 .. 42648172
9573 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G519200.1

Sequence Viewer

Length: 843 bp
ATGGCTTATCCACATTACCGATCACAGTTTGGGGACACAACGTTTACGAAAGTGTTTGTTGGAGGGCTCGCTTGGGAGACACCAACTGATGAAATGCGTAGATACTTTCAGCAGTTTGGGGAGATTCTTGAGGCTGTCATTATTGCTGATAAGAACACTGGAAAATCTAAAGGCTATGGATTTGTGACATTTCGTGATTCGGAATCGGCAAGGAGGGCTTGTGCAAATCCAAACCCTGTGATCGATGGAAGAAGAGCAAATTGTAACATTGCTTCGTTAGGACGTCCTCGGCCTTCACCCCCGAGAGGAAGAAATCAAGCCTCCGGTCCATACCAGGGAAGTGCACCACAGGCTGCACAATCGTATGGCGGAGCGCCGCCATTGCCACCACCGCTGCCGCCACCAGCCCCTATTATATATCCACCTTACAGCTACCCAACGTACACTCCTGCAGATTATGGGTACCATCAACAGGCAATGTACAACCAACAAGTTCAACAGCAGCCCCAGTACTACTCTCATCAAGTTTATGGATCATCACCATCTTCTCCCATGGGCACTCCATATTATTATCATGGCTATTCTTTTCAATCTCCAAGGGCAACGTTTTCTTCACCCCCGGCGCATCGTATGCCTGCTCCTTCCTATCTCTACTATCCTACGCAGATGGAACCCTCCTCCTCCTATCCAAATCCTGCTCCTCCACTCCTACAACAACCCCCCACCTCAAGGCAACATCCTCCCAATTTTACCTCTCCTTCACCTGATTCACAGAATCCACAACATGCGTCTACAGAAACAGAAGCTGGAGTTGTTACTTCAGAAAGTACTCCAGATGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000381 GO:0001501 GO:0001756 GO:0001947 GO:0002009 GO:0003002 GO:0003007 GO:0003143 GO:0003228 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006417 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0007368 GO:0007389 GO:0007507 GO:0007517 GO:0007519 GO:0008150 GO:0008152 GO:0009653 GO:0009790 GO:0009792 GO:0009799 GO:0009855 GO:0009887 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009896 GO:0009952 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010638 GO:0010720 GO:0010830 GO:0010831 GO:0014706 GO:0016070 GO:0016071 GO:0016202 GO:0017091 GO:0017148 GO:0019219 GO:0019222 GO:0022603 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031330 GO:0031331 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032956 GO:0032970 GO:0033043 GO:0033554 GO:0034248 GO:0034249 GO:0034641 GO:0035050 GO:0035239 GO:0035282 GO:0035295 GO:0035925 GO:0036002 GO:0043009 GO:0043170 GO:0043484 GO:0043487 GO:0043488 GO:0043489 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0045595 GO:0045597 GO:0045661 GO:0045663 GO:0045844 GO:0045934 GO:0045935 GO:0046483 GO:0048024 GO:0048255 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048562 GO:0048568 GO:0048598 GO:0048634 GO:0048636 GO:0048641 GO:0048643 GO:0048646 GO:0048701 GO:0048702 GO:0048704 GO:0048705 GO:0048706 GO:0048729 GO:0048731 GO:0048856 GO:0050684 GO:0050779 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051147 GO:0051149 GO:0051153 GO:0051155 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051493 GO:0051495 GO:0051716 GO:0060255 GO:0060284 GO:0060297 GO:0060298 GO:0060429 GO:0060537 GO:0060538 GO:0060562 GO:0061013 GO:0061014 GO:0061053 GO:0061061 GO:0061157 GO:0061158 GO:0061371 GO:0065007 GO:0065008 GO:0071704 GO:0072358 GO:0072359 GO:0080090 GO:0090304 GO:0097157 GO:0097159 GO:0110020 GO:1901360 GO:1901363 GO:1901861 GO:1901863 GO:1902115 GO:1902117 GO:1902369 GO:1902373 GO:1902809 GO:1902811 GO:1902903 GO:1902905 GO:1903311 GO:1903312 GO:1903313 GO:1904888 GO:1905868 GO:1905870 GO:1990715 GO:1990825 GO:2000026 GO:2000112 GO:2000113 GO:2000736 GO:2000738 GO:2000765 GO:2000766 GO:2001014 GO:2001016
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

281

Amino Acids

30.85

Weight (kDa)

8.39

Isoelectric Point (pI)

76.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 286
Acc65I GGTACC 1 cut(s) 462
AccB1I GGYRCC 1 cut(s) 462
AccI GTMKAC 1 cut(s) 791
AciI CCGC 4 cut(s) 369, 377, 392, 398
AclI AACGTT 2 cut(s) 41, 605
AclWI GGATC 1 cut(s) 541
AcuI CTGAAG 1 cut(s) 804
AcyI GRCGYC 1 cut(s) 283
AfaI GTAC 5 cut(s) 443, 464, 482, 512, 829
AfiI CCNNNNNNNGG 4 cut(s) 305, 335, 472, 729
AgsI TTSAA 2 cut(s) 497, 590
AjnI CCWGG 1 cut(s) 333
AluBI AGCT 2 cut(s) 432, 806
AluI AGCT 2 cut(s) 432, 806
Alw21I GWGCWC 1 cut(s) 346
Alw26I GTCTC 1 cut(s) 71
Alw44I GTGCAC 1 cut(s) 342
AlwI GGATC 1 cut(s) 541
AlwNI CAGNNNCTG 1 cut(s) 806
Ama87I CYCGRG 1 cut(s) 301
AoxI GGCC 1 cut(s) 290
ApaLI GTGCAC 1 cut(s) 342
ApeKI GCWGC 3 cut(s) 353, 394, 502
Asp718I GGTACC 1 cut(s) 462
AspLEI GCGC 2 cut(s) 376, 625
AspS9I GGNCC 1 cut(s) 326
AsuC2I CCSGG 1 cut(s) 620
AsuHPI GGTGA 4 cut(s) 288, 531, 606, 753
AvaI CYCGRG 1 cut(s) 301
AvaII GGWCC 1 cut(s) 326
BaeGI GKGCMC 2 cut(s) 346, 560
BanI GGYRCC 1 cut(s) 462
BanII GRGCYC 1 cut(s) 69
BarI GAAGNNNNNNTAC 2 cut(s) 256, 288
Bbv12I GWGCWC 1 cut(s) 346
BbvI GCAGC 3 cut(s) 340, 381, 514
BccI CCATC 4 cut(s) 239, 474, 550, 661
BciT130I CCWGG 1 cut(s) 335
BcnI CCSGG 1 cut(s) 620
BcoDI GTCTC 1 cut(s) 71
BfmI CTRYAG 2 cut(s) 450, 792
BfoI RGCGCY 1 cut(s) 377
BisI GCNGC 5 cut(s) 354, 377, 395, 398, 503
BlsI GCNGC 5 cut(s) 355, 378, 396, 399, 504
BmcAI AGTACT 2 cut(s) 512, 829
Bme1390I CCNGG 2 cut(s) 335, 620
Bme18I GGWCC 1 cut(s) 326
BmeT110I CYCGRG 1 cut(s) 301
BmgT120I GGNCC 1 cut(s) 326
BmiI GGNNCC 2 cut(s) 464, 672
BmrFI CCNGG 2 cut(s) 335, 620
BmrI ACTGGG 1 cut(s) 502
BmsI GCATC 2 cut(s) 634, 826
BmuI ACTGGG 1 cut(s) 502
BpmI CTGGAG 2 cut(s) 816, 828
BpuEI CTTGAG 2 cut(s) 149, 712
BpuMI CCSGG 1 cut(s) 620
Bsa29I ATCGAT 1 cut(s) 243
BsaHI GRCGYC 1 cut(s) 283
BsaJI CCNNGG 5 cut(s) 287, 334, 552, 596, 618
BsaWI WCCGGW 1 cut(s) 323
BsaXI ACNNNNNCTCC 4 cut(s) 205, 235, 430, 460
Bsc4I CCNNNNNNNGG 4 cut(s) 305, 335, 472, 729
Bse1I ACTGG 2 cut(s) 163, 508
Bse3DI GCAATG 3 cut(s) 267, 380, 483
BseBI CCWGG 1 cut(s) 335
BseCI ATCGAT 1 cut(s) 243
BseDI CCNNGG 5 cut(s) 287, 334, 552, 596, 618
BseGI GGATG 1 cut(s) 736
BseLI CCNNNNNNNGG 4 cut(s) 305, 335, 472, 729
BseMI GCAATG 3 cut(s) 267, 380, 483
BseNI ACTGG 2 cut(s) 163, 508
BseRI GAGGAG 3 cut(s) 667, 670, 690
BseSI GKGCMC 2 cut(s) 346, 560
BseXI GCAGC 3 cut(s) 340, 381, 514
BsgI GTGCAG 1 cut(s) 339
BshFI GGCC 1 cut(s) 292
BshNI GGYRCC 1 cut(s) 462
BshVI ATCGAT 1 cut(s) 243
BsiHKAI GWGCWC 1 cut(s) 346
BsiHKCI CYCGRG 1 cut(s) 301
BsiSI CCGG 2 cut(s) 324, 620
BslFI GGGAC 1 cut(s) 47
BslI CCNNNNNNNGG 4 cut(s) 305, 335, 472, 729
BsmAI GTCTC 1 cut(s) 71
BsmFI GGGAC 1 cut(s) 47
BsnI GGCC 1 cut(s) 292
BsoBI CYCGRG 1 cut(s) 301
Bsp1286I GDGCHC 3 cut(s) 69, 346, 560
Bsp1407I TGTACA 1 cut(s) 480
Bsp143I GATC 3 cut(s) 20, 240, 533
Bsp19I CCATGG 1 cut(s) 552
BspACI CCGC 4 cut(s) 369, 377, 392, 398
BspANI GGCC 1 cut(s) 292
BspDI ATCGAT 1 cut(s) 243
BspLI GGNNCC 2 cut(s) 464, 672
BspMAI CTGCAG 1 cut(s) 454
BspPI GGATC 1 cut(s) 541
BspQI GCTCTTC 1 cut(s) 247
BspT107I GGYRCC 1 cut(s) 462
BsrDI GCAATG 3 cut(s) 267, 380, 483
BsrGI TGTACA 1 cut(s) 480
BsrI ACTGG 2 cut(s) 163, 508
BssECI CCNNGG 5 cut(s) 287, 334, 552, 596, 618
BssMI GATC 3 cut(s) 20, 240, 533
BssNI GRCGYC 1 cut(s) 283
BssT1I CCWWGG 2 cut(s) 552, 596
Bst2UI CCWGG 1 cut(s) 335
Bst4CI ACNGT 1 cut(s) 27
Bst6I CTCTTC 1 cut(s) 247
BstACI GRCGYC 1 cut(s) 283
BstAPI GCANNNNNTGC 1 cut(s) 631
BstAUI TGTACA 1 cut(s) 480
BstC8I GCNNGC 2 cut(s) 69, 636
BstDSI CCRYGG 1 cut(s) 552
BstF5I GGATG 1 cut(s) 736
BstH2I RGCGCY 1 cut(s) 377
BstHHI GCGC 2 cut(s) 376, 625
BstKTI GATC 3 cut(s) 23, 243, 536
BstMAI GTCTC 1 cut(s) 71
BstMBI GATC 3 cut(s) 20, 240, 533
BstMWI GCNNNNNNNGC 5 cut(s) 215, 350, 382, 391, 631
BstNI CCWGG 1 cut(s) 335
BstNSI RCATGY 1 cut(s) 788
BstSCI CCNGG 2 cut(s) 333, 618
BstSFI CTRYAG 2 cut(s) 450, 792
BstSLI GKGCMC 2 cut(s) 346, 560
BstV1I GCAGC 3 cut(s) 340, 381, 514
Bsu15I ATCGAT 1 cut(s) 243
BsuRI GGCC 1 cut(s) 292
BsuTUI ATCGAT 1 cut(s) 243
BtgI CCRYGG 1 cut(s) 552
BtsCI GGATG 1 cut(s) 736
BtsIMutI CAGTG 1 cut(s) 156
Cac8I GCNNGC 2 cut(s) 69, 636
CaiI CAGNNNCTG 1 cut(s) 806
CfoI GCGC 2 cut(s) 376, 625
Cfr13I GGNCC 1 cut(s) 326
ClaI ATCGAT 1 cut(s) 243
CseI GACGC 1 cut(s) 777
Csp6I GTAC 5 cut(s) 442, 463, 481, 511, 828
CviAII CATG 3 cut(s) 553, 575, 785
CviQI GTAC 5 cut(s) 442, 463, 481, 511, 828
DpnI GATC 3 cut(s) 22, 242, 535
DpnII GATC 3 cut(s) 20, 240, 533
Eam1104I CTCTTC 1 cut(s) 247
EarI CTCTTC 1 cut(s) 247
EciI GGCGGA 1 cut(s) 384
Eco130I CCWWGG 2 cut(s) 552, 596
Eco24I GRGCYC 1 cut(s) 69
Eco47I GGWCC 1 cut(s) 326
Eco57I CTGAAG 1 cut(s) 804
Eco88I CYCGRG 1 cut(s) 301
EcoRII CCWGG 1 cut(s) 333
EcoT14I CCWWGG 2 cut(s) 552, 596
EcoT38I GRGCYC 1 cut(s) 69
ErhI CCWWGG 2 cut(s) 552, 596
FaeI CATG 3 cut(s) 556, 578, 788
FalI AAGNNNNNCTT 2 cut(s) 202, 234
FaqI GGGAC 1 cut(s) 47
FatI CATG 3 cut(s) 552, 574, 784
FblI GTMKAC 1 cut(s) 791
Fnu4HI GCNGC 5 cut(s) 354, 377, 395, 398, 503
FokI GGATG 1 cut(s) 723
FriOI GRGCYC 1 cut(s) 69
Fsp4HI GCNGC 5 cut(s) 354, 377, 395, 398, 503
GlaI GCGC 2 cut(s) 375, 624
GluI GCNGC 5 cut(s) 354, 377, 395, 398, 503
GsuI CTGGAG 2 cut(s) 816, 828
HaeII RGCGCY 1 cut(s) 377
HaeIII GGCC 1 cut(s) 292
HapII CCGG 2 cut(s) 324, 620
HgaI GACGC 1 cut(s) 777
HhaI GCGC 2 cut(s) 376, 625
Hin1I GRCGYC 1 cut(s) 283
Hin1II CATG 3 cut(s) 556, 578, 788
Hin6I GCGC 2 cut(s) 374, 623
HinP1I GCGC 2 cut(s) 374, 623
HinfI GANTC 5 cut(s) 124, 197, 203, 767, 775
HpaII CCGG 2 cut(s) 324, 620
HphI GGTGA 4 cut(s) 288, 531, 606, 753
Hpy166II GTNNAC 4 cut(s) 45, 344, 444, 792
Hpy188I TCNGA 2 cut(s) 202, 823
Hpy188III TCNNGA 3 cut(s) 128, 194, 833
Hpy8I GTNNAC 4 cut(s) 45, 344, 444, 792
HpyAV CCTTC 3 cut(s) 303, 651, 768
HpyCH4III ACNGT 1 cut(s) 27
HpyCH4IV ACGT 4 cut(s) 41, 283, 440, 605
HpyCH4V TGCA 4 cut(s) 224, 344, 356, 452
HpyF10VI GCNNNNNNNGC 5 cut(s) 215, 350, 382, 391, 631
HpySE526I ACGT 4 cut(s) 41, 283, 440, 605
Hsp92I GRCGYC 1 cut(s) 283
Hsp92II CATG 3 cut(s) 556, 578, 788
HspAI GCGC 2 cut(s) 374, 623
KpnI GGTACC 1 cut(s) 466
Kzo9I GATC 3 cut(s) 20, 240, 533
LguI GCTCTTC 1 cut(s) 247
LmnI GCTCC 3 cut(s) 371, 643, 703
Lsp1109I GCAGC 3 cut(s) 340, 381, 514
LweI GCATC 2 cut(s) 634, 826
MaeII ACGT 4 cut(s) 41, 283, 440, 605
MaeIII GTNAC 3 cut(s) 184, 263, 814
MalI GATC 3 cut(s) 22, 242, 535
MboI GATC 3 cut(s) 20, 240, 533
MboII GAAGA 5 cut(s) 261, 264, 321, 537, 603
MhlI GDGCHC 3 cut(s) 69, 346, 560
MluCI AATT 2 cut(s) 259, 745
MmeI TCCRAC 1 cut(s) 40
MspA1I CMGCKG 1 cut(s) 394
MspI CCGG 2 cut(s) 324, 620
MspR9I CCNGG 2 cut(s) 335, 620
MvaI CCWGG 1 cut(s) 335
MwoI GCNNNNNNNGC 5 cut(s) 215, 350, 382, 391, 631
NciI CCSGG 1 cut(s) 620
NcoI CCATGG 1 cut(s) 552
NdeII GATC 3 cut(s) 20, 240, 533
NlaIII CATG 3 cut(s) 556, 578, 788
NlaIV GGNNCC 2 cut(s) 464, 672
NmeAIII GCCGAG 1 cut(s) 268
NmuCI GTSAC 1 cut(s) 184
NspI RCATGY 1 cut(s) 788
PciSI GCTCTTC 1 cut(s) 247
PfeI GAWTC 5 cut(s) 124, 197, 203, 767, 775
PkrI GCNGC 5 cut(s) 355, 378, 396, 399, 504
Psp1406I AACGTT 2 cut(s) 41, 605
Psp6I CCWGG 1 cut(s) 333
PspGI CCWGG 1 cut(s) 333
PspN4I GGNNCC 2 cut(s) 464, 672
PspPI GGNCC 1 cut(s) 326
PstI CTGCAG 1 cut(s) 454
PstNI CAGNNNCTG 1 cut(s) 806
RsaI GTAC 5 cut(s) 443, 464, 482, 512, 829
RsaNI GTAC 5 cut(s) 442, 463, 481, 511, 828
SapI GCTCTTC 1 cut(s) 247
SatI GCNGC 5 cut(s) 354, 377, 395, 398, 503
Sau3AI GATC 3 cut(s) 20, 240, 533
Sau96I GGNCC 1 cut(s) 326
ScaI AGTACT 2 cut(s) 512, 829
ScrFI CCNGG 2 cut(s) 335, 620
SduI GDGCHC 3 cut(s) 69, 346, 560
SfaNI GCATC 2 cut(s) 634, 826
SfcI CTRYAG 2 cut(s) 450, 792
SinI GGWCC 1 cut(s) 326
SmlI CTYRAG 2 cut(s) 128, 727
SmoI CTYRAG 2 cut(s) 128, 727
Sse9I AATT 2 cut(s) 259, 745
SsiI CCGC 4 cut(s) 369, 377, 392, 398
StyD4I CCNGG 2 cut(s) 333, 618
StyI CCWWGG 2 cut(s) 552, 596
TaaI ACNGT 1 cut(s) 27
TaiI ACGT 4 cut(s) 44, 286, 443, 608
TaqI TCGA 1 cut(s) 243
TasI AATT 2 cut(s) 259, 745
TatI WGTACW 3 cut(s) 480, 510, 827
TauI GCSGC 2 cut(s) 379, 400
TfiI GAWTC 5 cut(s) 124, 197, 203, 767, 775
TscAI CASTG 1 cut(s) 163
TseFI GTSAC 1 cut(s) 184
TseI GCWGC 3 cut(s) 353, 394, 502
Tsp45I GTSAC 1 cut(s) 184
TspDTI ATGAA 1 cut(s) 105
TspRI CASTG 1 cut(s) 163
VneI GTGCAC 1 cut(s) 342
VpaK11BI GGWCC 1 cut(s) 326
XceI RCATGY 1 cut(s) 788
XmiI GTMKAC 1 cut(s) 791
ZraI GACGTC 1 cut(s) 284
ZrmI AGTACT 2 cut(s) 512, 829
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.