RLG00000000828

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0008508
Physical Location & Seq
Forward (+)
6083713 .. 6087292
3580 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000828

Sequence Viewer

Length: 846 bp
ATGGCTCACCCACATTACCGATCACAATTCGGAGACACAACTTTTACCAAAGTGTTTGTTGGAGGATTAGCATGGGAGACACCTACCGAGGAAATGCGAAGGTATTTCGAGCAGTTCGGAGAGATTCTTGAAGCTGTGATTATTGCTGATAAGAATACAGGAAAATCTAAAGGATATGGATTTGTGACTTTTCGTGATGCTGAATCGGCGAGGAGGGCTTGTGCTAATCCGAACCCCGTGATTGACGGAAGAAGAGCAAACTGTAATATTGCTTCGTTGGGAAGGCCTAGACCTTCACCCCCTAGAGGAAGAAATCAAGGTACAAGCCCATATCAGGGAAATGCACCACAGGCTGCACCATCCTACGGCGGAGTGCCGCCATTACCACCACCGCTGCCACAAGCACCGGCTCCGATTATATATCCAACTTACAGTTACCCAACCTACAGTCCTGATTATGGATACCATCAACAAGCTGCTATGTACAACCAACAAGTAGTTCATCAACAGCCCCAGTACTACCACCAACAACACTATGGAGCATCATCACCTTCAACAATGGGAGCTCCATACTACTATCATCAAGGCTACTCTTTTCAATCTCCAAGGGGCTCATTTTCTCCGGTTCCCCAGGCGCAACGTATGCCCGCTGCACCTTCCTATGTCTACTATCCTACGCAGCAGATGGATGCCTCCTTCTCCTCTTATCCTCCTCCAATCCTACAACAACCCCCCACATTAAGGCGTCCTCCTCTCACCTCTCCTTCCGATGCACAGAATCCACAACATGCCTCCACAGAATCAGAAGCTGGAGTTGCTACTTCAGAAAGTACTCCAGATACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000381 GO:0001501 GO:0001756 GO:0001947 GO:0002009 GO:0003002 GO:0003007 GO:0003143 GO:0003228 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006417 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0007368 GO:0007389 GO:0007507 GO:0007517 GO:0007519 GO:0008150 GO:0008152 GO:0009653 GO:0009790 GO:0009792 GO:0009799 GO:0009855 GO:0009887 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009896 GO:0009952 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010638 GO:0010720 GO:0010830 GO:0010831 GO:0014706 GO:0016070 GO:0016071 GO:0016202 GO:0017091 GO:0017148 GO:0019219 GO:0019222 GO:0022603 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031330 GO:0031331 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032956 GO:0032970 GO:0033043 GO:0033554 GO:0034248 GO:0034249 GO:0034641 GO:0035050 GO:0035239 GO:0035282 GO:0035295 GO:0035925 GO:0036002 GO:0043009 GO:0043170 GO:0043484 GO:0043487 GO:0043488 GO:0043489 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0045595 GO:0045597 GO:0045661 GO:0045663 GO:0045844 GO:0045934 GO:0045935 GO:0046483 GO:0048024 GO:0048255 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048562 GO:0048568 GO:0048598 GO:0048634 GO:0048636 GO:0048641 GO:0048643 GO:0048646 GO:0048701 GO:0048702 GO:0048704 GO:0048705 GO:0048706 GO:0048729 GO:0048731 GO:0048856 GO:0050684 GO:0050779 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051147 GO:0051149 GO:0051153 GO:0051155 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051493 GO:0051495 GO:0051716 GO:0060255 GO:0060284 GO:0060297 GO:0060298 GO:0060429 GO:0060537 GO:0060538 GO:0060562 GO:0061013 GO:0061014 GO:0061053 GO:0061061 GO:0061157 GO:0061158 GO:0061371 GO:0065007 GO:0065008 GO:0071704 GO:0072358 GO:0072359 GO:0080090 GO:0090304 GO:0097157 GO:0097159 GO:0110020 GO:1901360 GO:1901363 GO:1901861 GO:1901863 GO:1902115 GO:1902117 GO:1902369 GO:1902373 GO:1902809 GO:1902811 GO:1902903 GO:1902905 GO:1903311 GO:1903312 GO:1903313 GO:1904888 GO:1905868 GO:1905870 GO:1990715 GO:1990825 GO:2000026 GO:2000112 GO:2000113 GO:2000736 GO:2000738 GO:2000765 GO:2000766 GO:2001014 GO:2001016
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

282

Amino Acids

31.0

Weight (kDa)

8.4

Isoelectric Point (pI)

76.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 18 - 75 4.3e-17 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 666
AciI CCGC 4 cut(s) 369, 377, 392, 648
AcuI CTGAAG 1 cut(s) 807
AcyI GRCGYC 1 cut(s) 745
AfaI GTAC 4 cut(s) 322, 485, 518, 832
AfiI CCNNNNNNNGG 6 cut(s) 305, 334, 335, 365, 458, 741
AgsI TTSAA 3 cut(s) 131, 555, 599
AjnI CCWGG 1 cut(s) 630
AjuI GAANNNNNNNTTGG 2 cut(s) 483, 515
AluBI AGCT 4 cut(s) 134, 476, 566, 809
AluI AGCT 4 cut(s) 134, 476, 566, 809
Alw21I GWGCWC 1 cut(s) 568
Alw26I GTCTC 2 cut(s) 27, 71
AlwNI CAGNNNCTG 1 cut(s) 809
AoxI GGCC 1 cut(s) 284
ApeKI GCWGC 5 cut(s) 353, 394, 476, 650, 679
AspLEI GCGC 1 cut(s) 637
AsuHPI GGTGA 3 cut(s) 288, 540, 748
BanII GRGCYC 2 cut(s) 568, 614
BarI GAAGNNNNNNTAC 2 cut(s) 256, 288
Bbv12I GWGCWC 1 cut(s) 568
BbvI GCAGC 5 cut(s) 340, 381, 463, 637, 691
BccI CCATC 3 cut(s) 367, 474, 679
BceAI ACGGC 1 cut(s) 382
BciT130I CCWGG 1 cut(s) 632
BciVI GTATCC 1 cut(s) 455
BcoDI GTCTC 2 cut(s) 27, 71
BfaI CTAG 2 cut(s) 288, 303
BfmI CTRYAG 1 cut(s) 445
BfuI GTATCC 1 cut(s) 455
BisI GCNGC 6 cut(s) 354, 377, 395, 477, 651, 680
BlsI GCNGC 6 cut(s) 355, 378, 396, 478, 652, 681
BmcAI AGTACT 2 cut(s) 518, 832
Bme1390I CCNGG 1 cut(s) 632
BmiI GGNNCC 2 cut(s) 411, 627
BmrFI CCNGG 1 cut(s) 632
BmrI ACTGGG 1 cut(s) 508
BmsI GCATC 4 cut(s) 187, 551, 679, 760
BmuI ACTGGG 1 cut(s) 508
BpmI CTGGAG 2 cut(s) 819, 831
BsaHI GRCGYC 1 cut(s) 745
BsaJI CCNNGG 3 cut(s) 87, 605, 630
BsaWI WCCGGW 1 cut(s) 622
BsaXI ACNNNNNCTCC 2 cut(s) 205, 235
Bsc4I CCNNNNNNNGG 6 cut(s) 305, 334, 335, 365, 458, 741
Bse118I RCCGGY 1 cut(s) 406
Bse1I ACTGG 1 cut(s) 514
BseBI CCWGG 1 cut(s) 632
BseDI CCNNGG 3 cut(s) 87, 605, 630
BseGI GGATG 2 cut(s) 359, 694
BseLI CCNNNNNNNGG 6 cut(s) 305, 334, 335, 365, 458, 741
BseNI ACTGG 1 cut(s) 514
BseRI GAGGAG 4 cut(s) 226, 691, 702, 741
BseXI GCAGC 5 cut(s) 340, 381, 463, 637, 691
BsgI GTGCAG 2 cut(s) 339, 636
BshFI GGCC 1 cut(s) 286
BsiHKAI GWGCWC 1 cut(s) 568
BsiSI CCGG 2 cut(s) 407, 623
BslI CCNNNNNNNGG 6 cut(s) 305, 334, 335, 365, 458, 741
BsmAI GTCTC 2 cut(s) 27, 71
BsnI GGCC 1 cut(s) 286
Bsp1286I GDGCHC 2 cut(s) 568, 614
Bsp1407I TGTACA 1 cut(s) 483
Bsp143I GATC 1 cut(s) 20
BspACI CCGC 4 cut(s) 369, 377, 392, 648
BspANI GGCC 1 cut(s) 286
BspLI GGNNCC 2 cut(s) 411, 627
BspQI GCTCTTC 1 cut(s) 247
BsrFI RCCGGY 1 cut(s) 406
BsrGI TGTACA 1 cut(s) 483
BsrI ACTGG 1 cut(s) 514
BssAI RCCGGY 1 cut(s) 406
BssECI CCNNGG 3 cut(s) 87, 605, 630
BssMI GATC 1 cut(s) 20
BssNI GRCGYC 1 cut(s) 745
BssT1I CCWWGG 1 cut(s) 605
Bst2UI CCWGG 1 cut(s) 632
Bst4CI ACNGT 3 cut(s) 263, 434, 449
Bst6I CTCTTC 1 cut(s) 247
BstACI GRCGYC 1 cut(s) 745
BstAPI GCANNNNNTGC 1 cut(s) 643
BstAUI TGTACA 1 cut(s) 483
BstC8I GCNNGC 1 cut(s) 648
BstF5I GGATG 2 cut(s) 359, 694
BstHHI GCGC 1 cut(s) 637
BstKTI GATC 1 cut(s) 23
BstMAI GTCTC 2 cut(s) 27, 71
BstMBI GATC 1 cut(s) 20
BstMWI GCNNNNNNNGC 5 cut(s) 206, 215, 350, 643, 815
BstNI CCWGG 1 cut(s) 632
BstNSI RCATGY 1 cut(s) 791
BstSCI CCNGG 1 cut(s) 630
BstSFI CTRYAG 1 cut(s) 445
BstV1I GCAGC 5 cut(s) 340, 381, 463, 637, 691
BsuI GTATCC 1 cut(s) 455
BsuRI GGCC 1 cut(s) 286
BtsCI GGATG 2 cut(s) 359, 694
Cac8I GCNNGC 1 cut(s) 648
CaiI CAGNNNCTG 1 cut(s) 809
CfoI GCGC 1 cut(s) 637
Cfr10I RCCGGY 1 cut(s) 406
CseI GACGC 1 cut(s) 734
Csp6I GTAC 4 cut(s) 321, 484, 517, 831
CviAII CATG 2 cut(s) 72, 788
CviQI GTAC 4 cut(s) 321, 484, 517, 831
DpnI GATC 1 cut(s) 22
DpnII GATC 1 cut(s) 20
Eam1104I CTCTTC 1 cut(s) 247
EarI CTCTTC 1 cut(s) 247
EciI GGCGGA 1 cut(s) 384
Ecl136II GAGCTC 1 cut(s) 566
Eco130I CCWWGG 1 cut(s) 605
Eco147I AGGCCT 1 cut(s) 286
Eco24I GRGCYC 2 cut(s) 568, 614
Eco53kI GAGCTC 1 cut(s) 566
Eco57I CTGAAG 1 cut(s) 807
EcoICRI GAGCTC 1 cut(s) 566
EcoRII CCWGG 1 cut(s) 630
EcoT14I CCWWGG 1 cut(s) 605
EcoT38I GRGCYC 2 cut(s) 568, 614
ErhI CCWWGG 1 cut(s) 605
FaeI CATG 2 cut(s) 75, 791
FatI CATG 2 cut(s) 71, 787
FauI CCCGC 1 cut(s) 655
FblI GTMKAC 1 cut(s) 666
Fnu4HI GCNGC 6 cut(s) 354, 377, 395, 477, 651, 680
FokI GGATG 2 cut(s) 346, 701
FriOI GRGCYC 2 cut(s) 568, 614
Fsp4HI GCNGC 6 cut(s) 354, 377, 395, 477, 651, 680
FspBI CTAG 2 cut(s) 288, 303
GlaI GCGC 1 cut(s) 636
GluI GCNGC 6 cut(s) 354, 377, 395, 477, 651, 680
GsuI CTGGAG 2 cut(s) 819, 831
HaeIII GGCC 1 cut(s) 286
HapII CCGG 2 cut(s) 407, 623
HgaI GACGC 1 cut(s) 734
HhaI GCGC 1 cut(s) 637
Hin1I GRCGYC 1 cut(s) 745
Hin1II CATG 2 cut(s) 75, 791
Hin6I GCGC 1 cut(s) 635
HinP1I GCGC 1 cut(s) 635
HinfI GANTC 4 cut(s) 124, 203, 778, 800
HpaII CCGG 2 cut(s) 407, 623
HphI GGTGA 3 cut(s) 288, 540, 748
Hpy166II GTNNAC 1 cut(s) 667
Hpy188I TCNGA 7 cut(s) 32, 119, 231, 414, 769, 805, 826
Hpy188III TCNNGA 4 cut(s) 128, 194, 452, 836
Hpy8I GTNNAC 1 cut(s) 667
HpyAV CCTTC 7 cut(s) 93, 276, 303, 561, 666, 706, 774
HpyCH4III ACNGT 3 cut(s) 263, 434, 449
HpyCH4IV ACGT 1 cut(s) 640
HpyCH4V TGCA 4 cut(s) 344, 356, 653, 773
HpyF10VI GCNNNNNNNGC 5 cut(s) 206, 215, 350, 643, 815
HpySE526I ACGT 1 cut(s) 640
Hsp92I GRCGYC 1 cut(s) 745
Hsp92II CATG 2 cut(s) 75, 791
HspAI GCGC 1 cut(s) 635
Kzo9I GATC 1 cut(s) 20
LguI GCTCTTC 1 cut(s) 247
LmnI GCTCC 4 cut(s) 415, 539, 563, 571
Lsp1109I GCAGC 5 cut(s) 340, 381, 463, 637, 691
LweI GCATC 4 cut(s) 187, 551, 679, 760
MaeI CTAG 2 cut(s) 288, 303
MaeII ACGT 1 cut(s) 640
MaeIII GTNAC 2 cut(s) 184, 434
MalI GATC 1 cut(s) 22
MboI GATC 1 cut(s) 20
MboII GAAGA 3 cut(s) 261, 264, 321
MhlI GDGCHC 2 cut(s) 568, 614
MluCI AATT 1 cut(s) 26
MmeI TCCRAC 2 cut(s) 40, 449
MseI TTAA 1 cut(s) 740
MspA1I CMGCKG 2 cut(s) 394, 650
MspI CCGG 2 cut(s) 407, 623
MspR9I CCNGG 1 cut(s) 632
MvaI CCWGG 1 cut(s) 632
MwoI GCNNNNNNNGC 5 cut(s) 206, 215, 350, 643, 815
NdeII GATC 1 cut(s) 20
NlaIII CATG 2 cut(s) 75, 791
NlaIV GGNNCC 2 cut(s) 411, 627
NmuCI GTSAC 1 cut(s) 184
NspI RCATGY 1 cut(s) 791
PceI AGGCCT 1 cut(s) 286
PciSI GCTCTTC 1 cut(s) 247
PfeI GAWTC 4 cut(s) 124, 203, 778, 800
PkrI GCNGC 6 cut(s) 355, 378, 396, 478, 652, 681
Psp124BI GAGCTC 1 cut(s) 568
Psp6I CCWGG 1 cut(s) 630
PspGI CCWGG 1 cut(s) 630
PspN4I GGNNCC 2 cut(s) 411, 627
PstNI CAGNNNCTG 1 cut(s) 809
RsaI GTAC 4 cut(s) 322, 485, 518, 832
RsaNI GTAC 4 cut(s) 321, 484, 517, 831
SacI GAGCTC 1 cut(s) 568
SapI GCTCTTC 1 cut(s) 247
SaqAI TTAA 1 cut(s) 740
SatI GCNGC 6 cut(s) 354, 377, 395, 477, 651, 680
Sau3AI GATC 1 cut(s) 20
ScaI AGTACT 2 cut(s) 518, 832
ScrFI CCNGG 1 cut(s) 632
SduI GDGCHC 2 cut(s) 568, 614
SfaNI GCATC 4 cut(s) 187, 551, 679, 760
SfcI CTRYAG 1 cut(s) 445
Sse9I AATT 1 cut(s) 26
SseBI AGGCCT 1 cut(s) 286
SsiI CCGC 4 cut(s) 369, 377, 392, 648
SspI AATATT 1 cut(s) 268
SspMI CTAG 2 cut(s) 288, 303
SstI GAGCTC 1 cut(s) 568
StuI AGGCCT 1 cut(s) 286
StyD4I CCNGG 1 cut(s) 630
StyI CCWWGG 1 cut(s) 605
TaaI ACNGT 3 cut(s) 263, 434, 449
TaiI ACGT 1 cut(s) 643
TaqI TCGA 1 cut(s) 108
TasI AATT 1 cut(s) 26
TatI WGTACW 3 cut(s) 483, 516, 830
TauI GCSGC 1 cut(s) 379
TfiI GAWTC 4 cut(s) 124, 203, 778, 800
Tru1I TTAA 1 cut(s) 740
Tru9I TTAA 1 cut(s) 740
TseFI GTSAC 1 cut(s) 184
TseI GCWGC 5 cut(s) 353, 394, 476, 650, 679
Tsp45I GTSAC 1 cut(s) 184
TspDTI ATGAA 1 cut(s) 491
TspGWI ACGGA 1 cut(s) 261
XceI RCATGY 1 cut(s) 791
XcmI CCANNNNNNNNNTGG 1 cut(s) 533
XmiI GTMKAC 1 cut(s) 666
XspI CTAG 2 cut(s) 288, 303
ZrmI AGTACT 2 cut(s) 518, 832
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.