Rmu_sc0003589.1_g000001

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003589.1
OG0008508
Physical Location & Seq
Forward (+)
1 .. 962
962 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003589.1_g000001.1.cds

Sequence Viewer

Length: 343 bp
ttacccaacctacagtcctgattatggataccatcaacaagctgctatgtacaaccaacaagtagttcatcaacagccccagtactaccaccaacaacactatggagcatcatcaccttcaacaatgggagctccatactactatcatcaaggctactcttttcaatctccaaggggctcattttctgcggttccccaggcgcaacgtatgcccgctgcaccttcctatgtctactatcctacgcagcagatggatgcctccttctcctcttatcctcctccaatcctacaacaaccccccacattaaggcgtcctcctctcacctctccttccggtaactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000381 GO:0001501 GO:0001756 GO:0001947 GO:0002009 GO:0003002 GO:0003007 GO:0003143 GO:0003228 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006417 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0007368 GO:0007389 GO:0007507 GO:0007517 GO:0007519 GO:0008150 GO:0008152 GO:0009653 GO:0009790 GO:0009792 GO:0009799 GO:0009855 GO:0009887 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009896 GO:0009952 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010638 GO:0010720 GO:0010830 GO:0010831 GO:0014706 GO:0016070 GO:0016071 GO:0016202 GO:0017091 GO:0017148 GO:0019219 GO:0019222 GO:0022603 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031330 GO:0031331 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032956 GO:0032970 GO:0033043 GO:0033554 GO:0034248 GO:0034249 GO:0034641 GO:0035050 GO:0035239 GO:0035282 GO:0035295 GO:0035925 GO:0036002 GO:0043009 GO:0043170 GO:0043484 GO:0043487 GO:0043488 GO:0043489 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0045595 GO:0045597 GO:0045661 GO:0045663 GO:0045844 GO:0045934 GO:0045935 GO:0046483 GO:0048024 GO:0048255 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048562 GO:0048568 GO:0048598 GO:0048634 GO:0048636 GO:0048641 GO:0048643 GO:0048646 GO:0048701 GO:0048702 GO:0048704 GO:0048705 GO:0048706 GO:0048729 GO:0048731 GO:0048856 GO:0050684 GO:0050779 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051147 GO:0051149 GO:0051153 GO:0051155 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051493 GO:0051495 GO:0051716 GO:0060255 GO:0060284 GO:0060297 GO:0060298 GO:0060429 GO:0060537 GO:0060538 GO:0060562 GO:0061013 GO:0061014 GO:0061053 GO:0061061 GO:0061157 GO:0061158 GO:0061371 GO:0065007 GO:0065008 GO:0071704 GO:0072358 GO:0072359 GO:0080090 GO:0090304 GO:0097157 GO:0097159 GO:0110020 GO:1901360 GO:1901363 GO:1901861 GO:1901863 GO:1902115 GO:1902117 GO:1902369 GO:1902373 GO:1902809 GO:1902811 GO:1902903 GO:1902905 GO:1903311 GO:1903312 GO:1903313 GO:1904888 GO:1905868 GO:1905870 GO:1990715 GO:1990825 GO:2000026 GO:2000112 GO:2000113 GO:2000736 GO:2000738 GO:2000765 GO:2000766 GO:2001014 GO:2001016
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

113

Amino Acids

12.85

Weight (kDa)

8.85

Isoelectric Point (pI)

91.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 232
AciI CCGC 2 cut(s) 189, 214
AcyI GRCGYC 1 cut(s) 311
AfaI GTAC 2 cut(s) 51, 84
AfiI CCNNNNNNNGG 2 cut(s) 24, 307
AgsI TTSAA 2 cut(s) 121, 165
AjnI CCWGG 1 cut(s) 196
AjuI GAANNNNNNNTTGG 2 cut(s) 49, 81
AluBI AGCT 2 cut(s) 42, 132
AluI AGCT 2 cut(s) 42, 132
Alw21I GWGCWC 1 cut(s) 134
ApeKI GCWGC 3 cut(s) 42, 216, 245
AspLEI GCGC 1 cut(s) 203
AsuHPI GGTGA 2 cut(s) 106, 314
BanII GRGCYC 2 cut(s) 134, 180
Bbv12I GWGCWC 1 cut(s) 134
BbvI GCAGC 3 cut(s) 29, 203, 257
BccI CCATC 2 cut(s) 40, 245
BciT130I CCWGG 1 cut(s) 198
BciVI GTATCC 1 cut(s) 21
BfaI CTAG 1 cut(s) 341
BfmI CTRYAG 1 cut(s) 11
BfuI GTATCC 1 cut(s) 21
BisI GCNGC 3 cut(s) 43, 217, 246
BlsI GCNGC 3 cut(s) 44, 218, 247
BmcAI AGTACT 1 cut(s) 84
Bme1390I CCNGG 1 cut(s) 198
BmiI GGNNCC 1 cut(s) 193
BmrFI CCNGG 1 cut(s) 198
BmrI ACTGGG 1 cut(s) 74
BmsI GCATC 2 cut(s) 117, 245
BmuI ACTGGG 1 cut(s) 74
BsaHI GRCGYC 1 cut(s) 311
BsaJI CCNNGG 2 cut(s) 171, 196
BsaWI WCCGGW 1 cut(s) 333
Bsc4I CCNNNNNNNGG 2 cut(s) 24, 307
Bse1I ACTGG 1 cut(s) 80
BseBI CCWGG 1 cut(s) 198
BseDI CCNNGG 2 cut(s) 171, 196
BseGI GGATG 1 cut(s) 260
BseLI CCNNNNNNNGG 2 cut(s) 24, 307
BseNI ACTGG 1 cut(s) 80
BseRI GAGGAG 3 cut(s) 257, 268, 307
BseXI GCAGC 3 cut(s) 29, 203, 257
BsgI GTGCAG 1 cut(s) 202
BsiHKAI GWGCWC 1 cut(s) 134
BsiSI CCGG 1 cut(s) 334
BslI CCNNNNNNNGG 2 cut(s) 24, 307
Bsp1286I GDGCHC 2 cut(s) 134, 180
Bsp1407I TGTACA 1 cut(s) 49
BspACI CCGC 2 cut(s) 189, 214
BspLI GGNNCC 1 cut(s) 193
BsrGI TGTACA 1 cut(s) 49
BsrI ACTGG 1 cut(s) 80
BssECI CCNNGG 2 cut(s) 171, 196
BssNI GRCGYC 1 cut(s) 311
BssT1I CCWWGG 1 cut(s) 171
Bst2UI CCWGG 1 cut(s) 198
Bst4CI ACNGT 1 cut(s) 15
BstACI GRCGYC 1 cut(s) 311
BstAPI GCANNNNNTGC 1 cut(s) 209
BstAUI TGTACA 1 cut(s) 49
BstC8I GCNNGC 1 cut(s) 214
BstF5I GGATG 1 cut(s) 260
BstHHI GCGC 1 cut(s) 203
BstMWI GCNNNNNNNGC 1 cut(s) 209
BstNI CCWGG 1 cut(s) 198
BstSCI CCNGG 1 cut(s) 196
BstSFI CTRYAG 1 cut(s) 11
BstV1I GCAGC 3 cut(s) 29, 203, 257
BsuI GTATCC 1 cut(s) 21
BtsCI GGATG 1 cut(s) 260
Cac8I GCNNGC 1 cut(s) 214
CfoI GCGC 1 cut(s) 203
CseI GACGC 1 cut(s) 300
Csp6I GTAC 2 cut(s) 50, 83
CviJI RGCY 5 cut(s) 42, 77, 132, 154, 178
CviKI_1 RGCY 5 cut(s) 42, 77, 132, 154, 178
CviQI GTAC 2 cut(s) 50, 83
Ecl136II GAGCTC 1 cut(s) 132
Eco130I CCWWGG 1 cut(s) 171
Eco24I GRGCYC 2 cut(s) 134, 180
Eco53kI GAGCTC 1 cut(s) 132
EcoICRI GAGCTC 1 cut(s) 132
EcoRII CCWGG 1 cut(s) 196
EcoT14I CCWWGG 1 cut(s) 171
EcoT38I GRGCYC 2 cut(s) 134, 180
ErhI CCWWGG 1 cut(s) 171
FaiI YATR 6 cut(s) 25, 48, 103, 137, 210, 229
FauI CCCGC 1 cut(s) 221
FblI GTMKAC 1 cut(s) 232
Fnu4HI GCNGC 3 cut(s) 43, 217, 246
FokI GGATG 1 cut(s) 267
FriOI GRGCYC 2 cut(s) 134, 180
Fsp4HI GCNGC 3 cut(s) 43, 217, 246
FspBI CTAG 1 cut(s) 341
GlaI GCGC 1 cut(s) 202
GluI GCNGC 3 cut(s) 43, 217, 246
HapII CCGG 1 cut(s) 334
HgaI GACGC 1 cut(s) 300
HhaI GCGC 1 cut(s) 203
Hin1I GRCGYC 1 cut(s) 311
Hin6I GCGC 1 cut(s) 201
HinP1I GCGC 1 cut(s) 201
HpaII CCGG 1 cut(s) 334
HphI GGTGA 2 cut(s) 106, 314
Hpy166II GTNNAC 1 cut(s) 233
Hpy188III TCNNGA 1 cut(s) 18
Hpy8I GTNNAC 1 cut(s) 233
HpyAV CCTTC 4 cut(s) 127, 232, 272, 340
HpyCH4III ACNGT 1 cut(s) 15
HpyCH4IV ACGT 1 cut(s) 206
HpyCH4V TGCA 1 cut(s) 219
HpyF10VI GCNNNNNNNGC 1 cut(s) 209
HpySE526I ACGT 1 cut(s) 206
Hsp92I GRCGYC 1 cut(s) 311
HspAI GCGC 1 cut(s) 201
LmnI GCTCC 3 cut(s) 105, 129, 137
LpnPI CCDG 4 cut(s) 31, 93, 183, 210
Lsp1109I GCAGC 3 cut(s) 29, 203, 257
LweI GCATC 2 cut(s) 117, 245
MaeI CTAG 1 cut(s) 341
MaeII ACGT 1 cut(s) 206
MaeIII GTNAC 1 cut(s) 336
MhlI GDGCHC 2 cut(s) 134, 180
MnlI CCTC 7 cut(s) 269, 278, 286, 289, 325, 328, 335
MseI TTAA 1 cut(s) 306
MspA1I CMGCKG 1 cut(s) 216
MspI CCGG 1 cut(s) 334
MspR9I CCNGG 1 cut(s) 198
MvaI CCWGG 1 cut(s) 198
MwoI GCNNNNNNNGC 1 cut(s) 209
NlaIV GGNNCC 1 cut(s) 193
PkrI GCNGC 3 cut(s) 44, 218, 247
Psp124BI GAGCTC 1 cut(s) 134
Psp6I CCWGG 1 cut(s) 196
PspGI CCWGG 1 cut(s) 196
PspN4I GGNNCC 1 cut(s) 193
RsaI GTAC 2 cut(s) 51, 84
RsaNI GTAC 2 cut(s) 50, 83
SacI GAGCTC 1 cut(s) 134
SaqAI TTAA 1 cut(s) 306
SatI GCNGC 3 cut(s) 43, 217, 246
ScaI AGTACT 1 cut(s) 84
ScrFI CCNGG 1 cut(s) 198
SduI GDGCHC 2 cut(s) 134, 180
SetI ASST 7 cut(s) 12, 44, 119, 134, 209, 224, 327
SfaNI GCATC 2 cut(s) 117, 245
SfcI CTRYAG 1 cut(s) 11
SgeI CNNG 9 cut(s) 30, 51, 72, 92, 162, 184, 209, 210, 225
SsiI CCGC 2 cut(s) 189, 214
SspMI CTAG 1 cut(s) 341
SstI GAGCTC 1 cut(s) 134
StyD4I CCNGG 1 cut(s) 196
StyI CCWWGG 1 cut(s) 171
TaaI ACNGT 1 cut(s) 15
TaiI ACGT 1 cut(s) 209
TatI WGTACW 2 cut(s) 49, 82
Tru1I TTAA 1 cut(s) 306
Tru9I TTAA 1 cut(s) 306
TseI GCWGC 3 cut(s) 42, 216, 245
TspDTI ATGAA 1 cut(s) 57
XcmI CCANNNNNNNNNTGG 1 cut(s) 99
XmiI GTMKAC 1 cut(s) 232
XspI CTAG 1 cut(s) 341
ZrmI AGTACT 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.