MD00G1010200.v1.1

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0008508
Physical Location & Seq
Forward (+)
1294139 .. 1299070
4932 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1010200.v1.1.491

Sequence Viewer

Length: 897 bp
ATGCAGCTGCAAAAACAAATTAAGAAATCATCATATGAAGCTGTAGATGCCATGGCGCATCCACATTATCGATCGCAGTTCGGGGACACAACGTTTACAAAAGTGTTTGTCGGAGGGCTAGCTTGGGAGACACCAACTGATGAAATGCGCCGATATTTTGAGCAGTTTGGGGAGATTCTTGAGGCTGTTATTATTGCCGACAAAAATACTGGAAAATCTAAAGGCTACGGATTTGTGACATTTCGTGATCCTGAATCGGCAAGGAGGGCTTGCACTAATCCAAACCCTGTCATCGACGGAAGAAGAGCAAATTGTAACATTGCTTCATTGGGACGACCACGACCTTCTCCCCCGAGAGGAAGAAACCAAGGCGCCACTCCATACCAGGGAAATGCACCCCAGGCTGCACAGTCGTACGGCGGAGTGCCCCCATTACCGCCACCACTACCGCCATCGGCTCCTATAATATATCCATCGTACAGCCACCCAACCTACACTCCTGCAGATTATGGGTACCACCAAGCTATGTACAACCCACAAGTGCATCAACAACCTCAGTACTACCCTCAAGTGTATGGATCATCACCATCTTCACCAATGGGAACTCCATATTACTATCATGGCTATTCTTTTCAGTCTCCAAGTCCAAGGGGAACATTTTCTACACCCCAGGCGCATCGTATGCCCGGCCCTTCGTATCTCTACTATCCTACGCACAACATGGAACCCTCGTTCTCCAGCTCCTATCCTAATCCTCCACTCCTGCAACCACCCCCCACCTCAAGGCATAATCCTCCTAATTTTACCTCTCCTTTACCTGATTCTCAGAATCCGCAATATGCCTCAACCGAAACAGAAGCTGGAGTTGTTACTTCAGAAAGCACTCCAGATGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000381 GO:0001501 GO:0001756 GO:0001947 GO:0002009 GO:0003002 GO:0003007 GO:0003143 GO:0003228 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006417 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0007368 GO:0007389 GO:0007507 GO:0007517 GO:0007519 GO:0008150 GO:0008152 GO:0009653 GO:0009790 GO:0009792 GO:0009799 GO:0009855 GO:0009887 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009896 GO:0009952 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010638 GO:0010720 GO:0010830 GO:0010831 GO:0014706 GO:0016070 GO:0016071 GO:0016202 GO:0017091 GO:0017148 GO:0019219 GO:0019222 GO:0022603 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031330 GO:0031331 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032956 GO:0032970 GO:0033043 GO:0033554 GO:0034248 GO:0034249 GO:0034641 GO:0035050 GO:0035239 GO:0035282 GO:0035295 GO:0035925 GO:0036002 GO:0043009 GO:0043170 GO:0043484 GO:0043487 GO:0043488 GO:0043489 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0045595 GO:0045597 GO:0045661 GO:0045663 GO:0045844 GO:0045934 GO:0045935 GO:0046483 GO:0048024 GO:0048255 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048562 GO:0048568 GO:0048598 GO:0048634 GO:0048636 GO:0048641 GO:0048643 GO:0048646 GO:0048701 GO:0048702 GO:0048704 GO:0048705 GO:0048706 GO:0048729 GO:0048731 GO:0048856 GO:0050684 GO:0050779 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051147 GO:0051149 GO:0051153 GO:0051155 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051493 GO:0051495 GO:0051716 GO:0060255 GO:0060284 GO:0060297 GO:0060298 GO:0060429 GO:0060537 GO:0060538 GO:0060562 GO:0061013 GO:0061014 GO:0061053 GO:0061061 GO:0061157 GO:0061158 GO:0061371 GO:0065007 GO:0065008 GO:0071704 GO:0072358 GO:0072359 GO:0080090 GO:0090304 GO:0097157 GO:0097159 GO:0110020 GO:1901360 GO:1901363 GO:1901861 GO:1901863 GO:1902115 GO:1902117 GO:1902369 GO:1902373 GO:1902809 GO:1902811 GO:1902903 GO:1902905 GO:1903311 GO:1903312 GO:1903313 GO:1904888 GO:1905868 GO:1905870 GO:1990715 GO:1990825 GO:2000026 GO:2000112 GO:2000113 GO:2000736 GO:2000738 GO:2000765 GO:2000766 GO:2001014 GO:2001016
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

299

Amino Acids

32.96

Weight (kDa)

8.36

Isoelectric Point (pI)

68.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 35 - 92 3.3e-17 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 513
AccB1I GGYRCC 2 cut(s) 371, 513
AciI CCGC 4 cut(s) 420, 437, 449, 833
AclI AACGTT 1 cut(s) 92
AclWI GGATC 2 cut(s) 242, 586
AcuI CTGAAG 1 cut(s) 858
AcyI GRCGYC 1 cut(s) 372
AfaI GTAC 5 cut(s) 416, 479, 515, 530, 560
AfiI CCNNNNNNNGG 3 cut(s) 356, 386, 783
AjnI CCWGG 3 cut(s) 384, 399, 669
AloI GAACNNNNNNTCC 2 cut(s) 716, 748
AluBI AGCT 6 cut(s) 7, 41, 122, 524, 741, 860
AluI AGCT 6 cut(s) 7, 41, 122, 524, 741, 860
Alw26I GTCTC 2 cut(s) 122, 642
AlwI GGATC 2 cut(s) 242, 586
AlwNI CAGNNNCTG 1 cut(s) 860
Ama87I CYCGRG 1 cut(s) 352
AoxI GGCC 1 cut(s) 688
ApeKI GCWGC 3 cut(s) 4, 7, 404
Asp700I GAANNNNTTC 1 cut(s) 658
Asp718I GGTACC 1 cut(s) 513
AspLEI GCGC 4 cut(s) 58, 150, 374, 676
AspS9I GGNCC 1 cut(s) 689
AsuC2I CCSGG 1 cut(s) 687
AsuHPI GGTGA 2 cut(s) 576, 585
AsuNHI GCTAGC 1 cut(s) 118
AvaI CYCGRG 1 cut(s) 352
BaeGI GKGCMC 1 cut(s) 429
BanI GGYRCC 2 cut(s) 371, 513
BarI GAAGNNNNNNTAC 2 cut(s) 307, 339
BbvI GCAGC 2 cut(s) 16, 391
BccI CCATC 3 cut(s) 460, 481, 595
BceAI ACGGC 1 cut(s) 433
BciT130I CCWGG 3 cut(s) 386, 401, 671
BcnI CCSGG 1 cut(s) 687
BcoDI GTCTC 2 cut(s) 122, 642
BfaI CTAG 1 cut(s) 119
BfmI CTRYAG 2 cut(s) 42, 501
BfoI RGCGCY 1 cut(s) 375
BisI GCNGC 3 cut(s) 5, 8, 405
BlsI GCNGC 3 cut(s) 6, 9, 406
BmcAI AGTACT 1 cut(s) 560
Bme1390I CCNGG 4 cut(s) 386, 401, 671, 687
BmeT110I CYCGRG 1 cut(s) 352
BmgT120I GGNCC 1 cut(s) 689
BmiI GGNNCC 4 cut(s) 373, 459, 515, 726
BmrFI CCNGG 4 cut(s) 386, 401, 671, 687
BmsI GCATC 5 cut(s) 37, 67, 553, 685, 880
BmtI GCTAGC 1 cut(s) 122
BpmI CTGGAG 3 cut(s) 721, 870, 882
BpuEI CTTGAG 3 cut(s) 200, 552, 766
BpuMI CCSGG 1 cut(s) 687
Bsa29I ATCGAT 1 cut(s) 70
BsaHI GRCGYC 1 cut(s) 372
BsaJI CCNNGG 6 cut(s) 51, 367, 385, 399, 647, 669
BsaXI ACNNNNNCTCC 2 cut(s) 481, 511
Bsc4I CCNNNNNNNGG 3 cut(s) 356, 386, 783
Bse1I ACTGG 1 cut(s) 214
Bse3DI GCAATG 1 cut(s) 318
BseBI CCWGG 3 cut(s) 386, 401, 671
BseCI ATCGAT 1 cut(s) 70
BseDI CCNNGG 6 cut(s) 51, 367, 385, 399, 647, 669
BseGI GGATG 1 cut(s) 58
BseLI CCNNNNNNNGG 3 cut(s) 356, 386, 783
BseMI GCAATG 1 cut(s) 318
BseMII CTCAG 2 cut(s) 569, 839
BseNI ACTGG 1 cut(s) 214
BseSI GKGCMC 1 cut(s) 429
BseXI GCAGC 2 cut(s) 16, 391
BsgI GTGCAG 1 cut(s) 390
Bsh1285I CGRYCG 1 cut(s) 74
BshFI GGCC 1 cut(s) 690
BshNI GGYRCC 2 cut(s) 371, 513
BshVI ATCGAT 1 cut(s) 70
BsiEI CGRYCG 1 cut(s) 74
BsiHKCI CYCGRG 1 cut(s) 352
BsiSI CCGG 1 cut(s) 687
BsiWI CGTACG 1 cut(s) 414
BslFI GGGAC 2 cut(s) 98, 345
BslI CCNNNNNNNGG 3 cut(s) 356, 386, 783
BsmAI GTCTC 2 cut(s) 122, 642
BsmFI GGGAC 2 cut(s) 98, 345
BsnI GGCC 1 cut(s) 690
BsoBI CYCGRG 1 cut(s) 352
Bsp1286I GDGCHC 1 cut(s) 429
Bsp1407I TGTACA 1 cut(s) 528
Bsp143I GATC 3 cut(s) 71, 247, 578
Bsp19I CCATGG 1 cut(s) 51
BspACI CCGC 4 cut(s) 420, 437, 449, 833
BspANI GGCC 1 cut(s) 690
BspCNI CTCAG 2 cut(s) 568, 838
BspDI ATCGAT 1 cut(s) 70
BspLI GGNNCC 4 cut(s) 373, 459, 515, 726
BspMAI CTGCAG 1 cut(s) 505
BspOI GCTAGC 1 cut(s) 122
BspPI GGATC 2 cut(s) 242, 586
BspQI GCTCTTC 1 cut(s) 298
BspT107I GGYRCC 2 cut(s) 371, 513
BsrDI GCAATG 1 cut(s) 318
BsrGI TGTACA 1 cut(s) 528
BsrI ACTGG 1 cut(s) 214
BssECI CCNNGG 6 cut(s) 51, 367, 385, 399, 647, 669
BssMI GATC 3 cut(s) 71, 247, 578
BssNI GRCGYC 1 cut(s) 372
BssT1I CCWWGG 3 cut(s) 51, 367, 647
Bst2UI CCWGG 3 cut(s) 386, 401, 671
Bst4CI ACNGT 1 cut(s) 411
Bst6I CTCTTC 1 cut(s) 298
BstACI GRCGYC 1 cut(s) 372
BstAPI GCANNNNNTGC 1 cut(s) 682
BstAUI TGTACA 1 cut(s) 528
BstC8I GCNNGC 2 cut(s) 120, 271
BstDEI CTNAG 2 cut(s) 555, 825
BstDSI CCRYGG 1 cut(s) 51
BstF5I GGATG 1 cut(s) 58
BstH2I RGCGCY 1 cut(s) 375
BstHHI GCGC 4 cut(s) 58, 150, 374, 676
BstKTI GATC 3 cut(s) 74, 250, 581
BstMAI GTCTC 2 cut(s) 122, 642
BstMBI GATC 3 cut(s) 71, 247, 578
BstMCI CGRYCG 1 cut(s) 74
BstMWI GCNNNNNNNGC 4 cut(s) 47, 266, 401, 682
BstNI CCWGG 3 cut(s) 386, 401, 671
BstSCI CCNGG 4 cut(s) 384, 399, 669, 685
BstSFI CTRYAG 2 cut(s) 42, 501
BstSLI GKGCMC 1 cut(s) 429
BstV1I GCAGC 2 cut(s) 16, 391
Bsu15I ATCGAT 1 cut(s) 70
BsuRI GGCC 1 cut(s) 690
BsuTUI ATCGAT 1 cut(s) 70
BtgI CCRYGG 1 cut(s) 51
BtsCI GGATG 1 cut(s) 58
Cac8I GCNNGC 2 cut(s) 120, 271
CaiI CAGNNNCTG 1 cut(s) 860
CfoI GCGC 4 cut(s) 58, 150, 374, 676
Cfr13I GGNCC 1 cut(s) 689
ClaI ATCGAT 1 cut(s) 70
Csp6I GTAC 5 cut(s) 415, 478, 514, 529, 559
CviAII CATG 3 cut(s) 52, 620, 721
CviQI GTAC 5 cut(s) 415, 478, 514, 529, 559
DdeI CTNAG 2 cut(s) 555, 825
DinI GGCGCC 1 cut(s) 373
DpnI GATC 3 cut(s) 73, 249, 580
DpnII GATC 3 cut(s) 71, 247, 578
Eam1104I CTCTTC 1 cut(s) 298
EarI CTCTTC 1 cut(s) 298
EciI GGCGGA 1 cut(s) 435
Eco130I CCWWGG 3 cut(s) 51, 367, 647
Eco57I CTGAAG 1 cut(s) 858
Eco88I CYCGRG 1 cut(s) 352
EcoRII CCWGG 3 cut(s) 384, 399, 669
EcoT14I CCWWGG 3 cut(s) 51, 367, 647
EgeI GGCGCC 1 cut(s) 373
EheI GGCGCC 1 cut(s) 373
ErhI CCWWGG 3 cut(s) 51, 367, 647
FaeI CATG 3 cut(s) 55, 623, 724
FalI AAGNNNNNCTT 2 cut(s) 253, 285
FaqI GGGAC 2 cut(s) 98, 345
FatI CATG 3 cut(s) 51, 619, 720
FauNDI CATATG 1 cut(s) 34
Fnu4HI GCNGC 3 cut(s) 5, 8, 405
FokI GGATG 1 cut(s) 45
Fsp4HI GCNGC 3 cut(s) 5, 8, 405
FspBI CTAG 1 cut(s) 119
GlaI GCGC 4 cut(s) 57, 149, 373, 675
GluI GCNGC 3 cut(s) 5, 8, 405
GsuI CTGGAG 3 cut(s) 721, 870, 882
HaeII RGCGCY 1 cut(s) 375
HaeIII GGCC 1 cut(s) 690
HapII CCGG 1 cut(s) 687
HhaI GCGC 4 cut(s) 58, 150, 374, 676
Hin1I GRCGYC 1 cut(s) 372
Hin1II CATG 3 cut(s) 55, 623, 724
Hin6I GCGC 4 cut(s) 56, 148, 372, 674
HinP1I GCGC 4 cut(s) 56, 148, 372, 674
HinfI GANTC 4 cut(s) 175, 254, 821, 829
HpaII CCGG 1 cut(s) 687
HphI GGTGA 2 cut(s) 576, 585
Hpy166II GTNNAC 1 cut(s) 96
Hpy188I TCNGA 3 cut(s) 113, 828, 877
Hpy188III TCNNGA 4 cut(s) 179, 245, 251, 887
Hpy8I GTNNAC 1 cut(s) 96
Hpy99I CGWCG 1 cut(s) 299
HpyAV CCTTC 2 cut(s) 354, 702
HpyCH4III ACNGT 1 cut(s) 411
HpyCH4IV ACGT 1 cut(s) 92
HpyCH4V TGCA 8 cut(s) 4, 10, 273, 395, 407, 503, 544, 766
HpyF10VI GCNNNNNNNGC 4 cut(s) 47, 266, 401, 682
HpyF3I CTNAG 2 cut(s) 555, 825
HpySE526I ACGT 1 cut(s) 92
Hsp92I GRCGYC 1 cut(s) 372
Hsp92II CATG 3 cut(s) 55, 623, 724
HspAI GCGC 4 cut(s) 56, 148, 372, 674
KasI GGCGCC 1 cut(s) 371
KpnI GGTACC 1 cut(s) 517
Kzo9I GATC 3 cut(s) 71, 247, 578
LguI GCTCTTC 1 cut(s) 298
LmnI GCTCC 2 cut(s) 463, 746
Lsp1109I GCAGC 2 cut(s) 16, 391
LweI GCATC 5 cut(s) 37, 67, 553, 685, 880
MaeI CTAG 1 cut(s) 119
MaeII ACGT 1 cut(s) 92
MaeIII GTNAC 3 cut(s) 235, 314, 868
MalI GATC 3 cut(s) 73, 249, 580
MboI GATC 3 cut(s) 71, 247, 578
MboII GAAGA 4 cut(s) 312, 315, 372, 582
MhlI GDGCHC 1 cut(s) 429
MluCI AATT 3 cut(s) 18, 310, 799
Mly113I GGCGCC 1 cut(s) 372
MmeI TCCRAC 1 cut(s) 91
MroXI GAANNNNTTC 1 cut(s) 658
MseI TTAA 1 cut(s) 21
MspA1I CMGCKG 1 cut(s) 7
MspI CCGG 1 cut(s) 687
MspR9I CCNGG 4 cut(s) 386, 401, 671, 687
MvaI CCWGG 3 cut(s) 386, 401, 671
MwoI GCNNNNNNNGC 4 cut(s) 47, 266, 401, 682
NarI GGCGCC 1 cut(s) 372
NciI CCSGG 1 cut(s) 687
NcoI CCATGG 1 cut(s) 51
NdeI CATATG 1 cut(s) 34
NdeII GATC 3 cut(s) 71, 247, 578
NheI GCTAGC 1 cut(s) 118
NlaIII CATG 3 cut(s) 55, 623, 724
NlaIV GGNNCC 4 cut(s) 373, 459, 515, 726
NmuCI GTSAC 1 cut(s) 235
PciSI GCTCTTC 1 cut(s) 298
PdmI GAANNNNTTC 1 cut(s) 658
PfeI GAWTC 4 cut(s) 175, 254, 821, 829
Pfl23II CGTACG 1 cut(s) 414
PkrI GCNGC 3 cut(s) 6, 9, 406
Ple19I CGATCG 1 cut(s) 74
PluTI GGCGCC 1 cut(s) 375
Psp1406I AACGTT 1 cut(s) 92
Psp6I CCWGG 3 cut(s) 384, 399, 669
PspGI CCWGG 3 cut(s) 384, 399, 669
PspLI CGTACG 1 cut(s) 414
PspN4I GGNNCC 4 cut(s) 373, 459, 515, 726
PspPI GGNCC 1 cut(s) 689
PsrI GAACNNNNNNTAC 2 cut(s) 646, 678
PstI CTGCAG 1 cut(s) 505
PstNI CAGNNNCTG 1 cut(s) 860
PvuI CGATCG 1 cut(s) 74
PvuII CAGCTG 1 cut(s) 7
RsaI GTAC 5 cut(s) 416, 479, 515, 530, 560
RsaNI GTAC 5 cut(s) 415, 478, 514, 529, 559
SapI GCTCTTC 1 cut(s) 298
SaqAI TTAA 1 cut(s) 21
SatI GCNGC 3 cut(s) 5, 8, 405
Sau3AI GATC 3 cut(s) 71, 247, 578
Sau96I GGNCC 1 cut(s) 689
ScaI AGTACT 1 cut(s) 560
ScrFI CCNGG 4 cut(s) 386, 401, 671, 687
SduI GDGCHC 1 cut(s) 429
SfaNI GCATC 5 cut(s) 37, 67, 553, 685, 880
SfcI CTRYAG 2 cut(s) 42, 501
SfoI GGCGCC 1 cut(s) 373
SmlI CTYRAG 3 cut(s) 179, 567, 781
SmoI CTYRAG 3 cut(s) 179, 567, 781
Sse9I AATT 3 cut(s) 18, 310, 799
SsiI CCGC 4 cut(s) 420, 437, 449, 833
SspDI GGCGCC 1 cut(s) 371
SspMI CTAG 1 cut(s) 119
StyD4I CCNGG 4 cut(s) 384, 399, 669, 685
StyI CCWWGG 3 cut(s) 51, 367, 647
TaaI ACNGT 1 cut(s) 411
TaiI ACGT 1 cut(s) 95
TaqI TCGA 2 cut(s) 70, 294
TasI AATT 3 cut(s) 18, 310, 799
TatI WGTACW 2 cut(s) 528, 558
TfiI GAWTC 4 cut(s) 175, 254, 821, 829
Tru1I TTAA 1 cut(s) 21
Tru9I TTAA 1 cut(s) 21
TseFI GTSAC 1 cut(s) 235
TseI GCWGC 3 cut(s) 4, 7, 404
Tsp45I GTSAC 1 cut(s) 235
TspDTI ATGAA 3 cut(s) 51, 156, 315
TspGWI ACGGA 2 cut(s) 243, 312
XmnI GAANNNNTTC 1 cut(s) 658
XspI CTAG 1 cut(s) 119
ZrmI AGTACT 1 cut(s) 560
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.