Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003888.1

Orthogroup ID

OG0008508

Physical Location & Seq

Genomic Coordinates Forward (+)

2791 .. 3441

Gene Structure 651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003888.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

atgcgaaggtatttcgagcagttcggagagattcttgaagctgtgattattgctgataagaatacaggaaaatctaaaggatatggatttgtgacttttcgtgatgctgaatcagcgaggagggcttgtgctaatccgaaccccgtgatcgacggaagaagagcaaactgtaatattgcttcgttgggaaggcctagaccttcaccccctagaggaagaagtcaaggtacaagcccatatcagggaaatgcaacacaggctgcaccaccctacggcggagtgccgccattaccgccaccgctgccacaagcaccggctccgattatatatccaccttacaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000381 GO:0001501 GO:0001756 GO:0001947 GO:0002009 GO:0003002 GO:0003007 GO:0003143 GO:0003228 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006417 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0007368 GO:0007389 GO:0007507 GO:0007517 GO:0007519 GO:0008150 GO:0008152 GO:0009653 GO:0009790 GO:0009792 GO:0009799 GO:0009855 GO:0009887 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009896 GO:0009952 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010638 GO:0010720 GO:0010830 GO:0010831 GO:0014706 GO:0016070 GO:0016071 GO:0016202 GO:0017091 GO:0017148 GO:0019219 GO:0019222 GO:0022603 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031330 GO:0031331 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032956 GO:0032970 GO:0033043 GO:0033554 GO:0034248 GO:0034249 GO:0034641 GO:0035050 GO:0035239 GO:0035282 GO:0035295 GO:0035925 GO:0036002 GO:0043009 GO:0043170 GO:0043484 GO:0043487 GO:0043488 GO:0043489 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0045595 GO:0045597 GO:0045661 GO:0045663 GO:0045844 GO:0045934 GO:0045935 GO:0046483 GO:0048024 GO:0048255 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048562 GO:0048568 GO:0048598 GO:0048634 GO:0048636 GO:0048641 GO:0048643 GO:0048646 GO:0048701 GO:0048702 GO:0048704 GO:0048705 GO:0048706 GO:0048729 GO:0048731 GO:0048856 GO:0050684 GO:0050779 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051147 GO:0051149 GO:0051153 GO:0051155 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051493 GO:0051495 GO:0051716 GO:0060255 GO:0060284 GO:0060297 GO:0060298 GO:0060429 GO:0060537 GO:0060538 GO:0060562 GO:0061013 GO:0061014 GO:0061053 GO:0061061 GO:0061157 GO:0061158 GO:0061371 GO:0065007 GO:0065008 GO:0071704 GO:0072358 GO:0072359 GO:0080090 GO:0090304 GO:0097157 GO:0097159 GO:0110020 GO:1901360 GO:1901363 GO:1901861 GO:1901863 GO:1902115 GO:1902117 GO:1902369 GO:1902373 GO:1902809 GO:1902811 GO:1902903 GO:1902905 GO:1903311 GO:1903312 GO:1903313 GO:1904888 GO:1905868 GO:1905870 GO:1990715 GO:1990825 GO:2000026 GO:2000112 GO:2000113 GO:2000736 GO:2000738 GO:2000765 GO:2000766 GO:2001014 GO:2001016

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

114

Amino Acids

12.33

Weight (kDa)

10.1

Isoelectric Point (pI)

69.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008508)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22330 AT1G78260 AT1G78260
fragaria_vesca	FvH4_5g37060 FvH4_5g37060
malus_domestica	MD00G1010200.v1.1 MD08G1184900.v1.1
prunus_persica	Prupe.1G519200_v2.0.a1 Prupe.1G519200_v2.0.a1 Prupe.1G519300_v2.0.a1 Prupe.5G005300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0243851
rosa_laevigata	RLG00000000828
rosa_multiflora	Rmu_sc0003589.1_g000001 Rmu_sc0003888.1_g000002
rosa_roxburghii	Rroxscaffold_3G00221720
rosa_rugosa	Rorug07G0321800 Rorug07G0321800
rosa_samantha	Rh7AG476500 Rh7BG447700 Rh7CG494700 Rh7DG461800
rosa_wichuraiana	Rw7G039770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	276, 284, 293, 299
AfaI	GTAC	1 cut(s)	229
AfiI	CCNNNNNNNGG	5 cut(s)	212, 241, 242, 272, 275
AgsI	TTSAA	1 cut(s)	38
AluBI	AGCT	1 cut(s)	41
AluI	AGCT	1 cut(s)	41
AoxI	GGCC	1 cut(s)	191
ApeKI	GCWGC	2 cut(s)	260, 301
AsuHPI	GGTGA	1 cut(s)	195
BarI	GAAGNNNNNNTAC	4 cut(s)	163, 195, 211, 243
BbvI	GCAGC	2 cut(s)	247, 288
BceAI	ACGGC	1 cut(s)	289
BfaI	CTAG	2 cut(s)	195, 210
BisI	GCNGC	3 cut(s)	261, 284, 302
BlsI	GCNGC	3 cut(s)	262, 285, 303
BmiI	GGNNCC	1 cut(s)	318
BmsI	GCATC	1 cut(s)	94
BsaXI	ACNNNNNCTCC	2 cut(s)	112, 142
Bsc4I	CCNNNNNNNGG	5 cut(s)	212, 241, 242, 272, 275
Bse118I	RCCGGY	1 cut(s)	313
BseLI	CCNNNNNNNGG	5 cut(s)	212, 241, 242, 272, 275
BseRI	GAGGAG	1 cut(s)	133
BseXI	GCAGC	2 cut(s)	247, 288
BsgI	GTGCAG	1 cut(s)	246
BshFI	GGCC	1 cut(s)	193
BsiSI	CCGG	1 cut(s)	314
BslI	CCNNNNNNNGG	5 cut(s)	212, 241, 242, 272, 275
BsnI	GGCC	1 cut(s)	193
Bsp143I	GATC	1 cut(s)	147
BspACI	CCGC	4 cut(s)	276, 284, 293, 299
BspANI	GGCC	1 cut(s)	193
BspLI	GGNNCC	1 cut(s)	318
BspQI	GCTCTTC	1 cut(s)	154
BsrFI	RCCGGY	1 cut(s)	313
BssAI	RCCGGY	1 cut(s)	313
BssMI	GATC	1 cut(s)	147
Bst4CI	ACNGT	1 cut(s)	170
Bst6I	CTCTTC	1 cut(s)	154
BstKTI	GATC	1 cut(s)	150
BstMBI	GATC	1 cut(s)	147
BstMWI	GCNNNNNNNGC	5 cut(s)	113, 122, 257, 292, 301
BstV1I	GCAGC	2 cut(s)	247, 288
BsuRI	GGCC	1 cut(s)	193
Cfr10I	RCCGGY	1 cut(s)	313
Csp6I	GTAC	1 cut(s)	228
CviJI	RGCY	6 cut(s)	41, 125, 193, 234, 260, 317
CviKI_1	RGCY	6 cut(s)	41, 125, 193, 234, 260, 317
CviQI	GTAC	1 cut(s)	228
DpnI	GATC	1 cut(s)	149
DpnII	GATC	1 cut(s)	147
Eam1104I	CTCTTC	1 cut(s)	154
EarI	CTCTTC	1 cut(s)	154
EciI	GGCGGA	1 cut(s)	291
Eco147I	AGGCCT	1 cut(s)	193
FaiI	YATR	4 cut(s)	84, 238, 326, 328
Fnu4HI	GCNGC	3 cut(s)	261, 284, 302
Fsp4HI	GCNGC	3 cut(s)	261, 284, 302
FspBI	CTAG	2 cut(s)	195, 210
GluI	GCNGC	3 cut(s)	261, 284, 302
HaeIII	GGCC	1 cut(s)	193
HapII	CCGG	1 cut(s)	314
HinfI	GANTC	2 cut(s)	31, 110
HpaII	CCGG	1 cut(s)	314
HphI	GGTGA	1 cut(s)	195
Hpy188I	TCNGA	3 cut(s)	26, 138, 321
Hpy188III	TCNNGA	2 cut(s)	35, 101
Hpy99I	CGWCG	1 cut(s)	155
HpyAV	CCTTC	2 cut(s)	183, 210
HpyCH4III	ACNGT	1 cut(s)	170
HpyCH4V	TGCA	2 cut(s)	251, 263
HpyF10VI	GCNNNNNNNGC	5 cut(s)	113, 122, 257, 292, 301
Kzo9I	GATC	1 cut(s)	147
LguI	GCTCTTC	1 cut(s)	154
LmnI	GCTCC	1 cut(s)	322
LpnPI	CCDG	5 cut(s)	51, 227, 242, 325, 327
Lsp1109I	GCAGC	2 cut(s)	247, 288
LweI	GCATC	1 cut(s)	94
MaeI	CTAG	2 cut(s)	195, 210
MaeIII	GTNAC	1 cut(s)	91
MalI	GATC	1 cut(s)	149
MboI	GATC	1 cut(s)	147
MboII	GAAGA	3 cut(s)	168, 171, 228
MnlI	CCTC	3 cut(s)	111, 114, 206
MspA1I	CMGCKG	1 cut(s)	301
MspI	CCGG	1 cut(s)	314
MwoI	GCNNNNNNNGC	5 cut(s)	113, 122, 257, 292, 301
NdeII	GATC	1 cut(s)	147
NlaIV	GGNNCC	1 cut(s)	318
NmuCI	GTSAC	1 cut(s)	91
PceI	AGGCCT	1 cut(s)	193
PciSI	GCTCTTC	1 cut(s)	154
PfeI	GAWTC	2 cut(s)	31, 110
PkrI	GCNGC	3 cut(s)	262, 285, 303
PspN4I	GGNNCC	1 cut(s)	318
RsaI	GTAC	1 cut(s)	229
RsaNI	GTAC	1 cut(s)	228
SapI	GCTCTTC	1 cut(s)	154
SatI	GCNGC	3 cut(s)	261, 284, 302
Sau3AI	GATC	1 cut(s)	147
SetI	ASST	6 cut(s)	11, 43, 202, 229, 337, 344
SfaNI	GCATC	1 cut(s)	94
SseBI	AGGCCT	1 cut(s)	193
SsiI	CCGC	4 cut(s)	276, 284, 293, 299
SspI	AATATT	1 cut(s)	175
SspMI	CTAG	2 cut(s)	195, 210
StuI	AGGCCT	1 cut(s)	193
TaaI	ACNGT	1 cut(s)	170
TaqI	TCGA	2 cut(s)	15, 150
TauI	GCSGC	1 cut(s)	286
TfiI	GAWTC	2 cut(s)	31, 110
TseFI	GTSAC	1 cut(s)	91
TseI	GCWGC	2 cut(s)	260, 301
Tsp45I	GTSAC	1 cut(s)	91
TspGWI	ACGGA	1 cut(s)	168
XspI	CTAG	2 cut(s)	195, 210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.