Prupe.5G005300_v2.0.a1

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0001423
Physical Location & Seq
Forward (+)
622814 .. 628227
5414 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G005300.1

Sequence Viewer

Length: 846 bp
ATGGCGTATCAGAGTTCTGGGTCGAGTTCCAGTTCCGGCCCATCTGGGTTCCAGTTCCTGAATTCCCCTTTTGGTGACACTACCTACACCAAGGTCTTTGTTGGGGGGCTCGCCTGGGAGACTCACAGCGACACCATGCGCCGCTATTTCGAGCAGTTCGGAGAGATTCTCGAGGCCGTTGTTATTTCCGATAAGAACACAGGCCGATCCAAAGGCTATGGCTTTGTGACTTTCCGAGAACCGGAGGCTGCCGCACGAGCCTGTGCCGATCCAACTCCAATTATCGATGGCAGGCGGGCAAATTGTAATCTGGCTTCACTCAGGCGGCCGAGGCCACCTATGCATTATGGGCGCCCGAGACCAGCTGCTCCATACATTGGAAGCATGCAAGCTACCCGAGGGGCTTACATTGGAGGATATGGCTACCAGCAACCTGTTCCTTACAACTATCAACAAGGGCTAATGTATCCTAATTACGGGTATGCAACTTATGGACCTGAATACACTTATTCACAGGGTGTTTACAACCCCTATGCGGGTCAGCAATATCTTCAGATGTATGGAGTTCCAGGGACGGTTAATGCTGCTCTTTATCCTTATGGACAACTGGGTCAAACAATACCTGGTGGTCAGGGTTATCCTACAGTTCATGGATATGCAATGCCTGCTCAGCAGATAGTCCAATTTGGTGGACCCAGTGTTAATGCAGTTACAACTACCCCAGTGCCTCCAGTTCAAGCACCATATCCTACAGGTATGGTAGCAAGTGTTGCGGCACAACCACATTTTATAGTTTCTGCTCCCCAATATATGCAGGGTAGTGGTTCTGAGCAAACAGCTGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000381 GO:0001501 GO:0001756 GO:0001947 GO:0002009 GO:0003002 GO:0003007 GO:0003143 GO:0003228 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006417 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0007368 GO:0007389 GO:0007507 GO:0007517 GO:0007519 GO:0008150 GO:0008152 GO:0009653 GO:0009790 GO:0009792 GO:0009799 GO:0009855 GO:0009887 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009896 GO:0009952 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010638 GO:0010720 GO:0010830 GO:0010831 GO:0014706 GO:0016070 GO:0016071 GO:0016202 GO:0017091 GO:0017148 GO:0019219 GO:0019222 GO:0022603 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031330 GO:0031331 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032956 GO:0032970 GO:0033043 GO:0033554 GO:0034248 GO:0034249 GO:0034641 GO:0035050 GO:0035239 GO:0035282 GO:0035295 GO:0035925 GO:0036002 GO:0043009 GO:0043170 GO:0043484 GO:0043487 GO:0043488 GO:0043489 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0045595 GO:0045597 GO:0045661 GO:0045663 GO:0045844 GO:0045934 GO:0045935 GO:0046483 GO:0048024 GO:0048255 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048562 GO:0048568 GO:0048598 GO:0048634 GO:0048636 GO:0048641 GO:0048643 GO:0048646 GO:0048701 GO:0048702 GO:0048704 GO:0048705 GO:0048706 GO:0048729 GO:0048731 GO:0048856 GO:0050684 GO:0050779 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051147 GO:0051149 GO:0051153 GO:0051155 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051493 GO:0051495 GO:0051716 GO:0060255 GO:0060284 GO:0060297 GO:0060298 GO:0060429 GO:0060537 GO:0060538 GO:0060562 GO:0061013 GO:0061014 GO:0061053 GO:0061061 GO:0061157 GO:0061158 GO:0061371 GO:0065007 GO:0065008 GO:0071704 GO:0072358 GO:0072359 GO:0080090 GO:0090304 GO:0097157 GO:0097159 GO:0110020 GO:1901360 GO:1901363 GO:1901861 GO:1901863 GO:1902115 GO:1902117 GO:1902369 GO:1902373 GO:1902809 GO:1902811 GO:1902903 GO:1902905 GO:1903311 GO:1903312 GO:1903313 GO:1904888 GO:1905868 GO:1905870 GO:1990715 GO:1990825 GO:2000026 GO:2000112 GO:2000113 GO:2000736 GO:2000738 GO:2000765 GO:2000766 GO:2001014 GO:2001016
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

282

Amino Acids

30.29

Weight (kDa)

8.68

Isoelectric Point (pI)

52.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 609
AccB1I GGYRCC 1 cut(s) 351
AccB7I CCANNNNNTGG 1 cut(s) 377
AciI CCGC 6 cut(s) 142, 252, 295, 325, 536, 773
AclWI GGATC 2 cut(s) 201, 263
AcoI YGGCCR 1 cut(s) 326
AcsI RAATTY 1 cut(s) 61
AcuI CTGAAG 1 cut(s) 536
AcyI GRCGYC 1 cut(s) 352
AdeI CACNNNGTG 1 cut(s) 518
AfiI CCNNNNNNNGG 5 cut(s) 241, 377, 476, 535, 536
AgsI TTSAA 1 cut(s) 737
AjnI CCWGG 3 cut(s) 113, 568, 622
AluBI AGCT 3 cut(s) 365, 392, 839
AluI AGCT 3 cut(s) 365, 392, 839
Alw26I GTCTC 2 cut(s) 113, 352
AlwI GGATC 2 cut(s) 201, 263
AlwNI CAGNNNCTG 1 cut(s) 58
Ama87I CYCGRG 3 cut(s) 170, 355, 396
AoxI GGCC 5 cut(s) 37, 174, 202, 326, 332
ApeKI GCWGC 3 cut(s) 248, 365, 584
ApoI RAATTY 1 cut(s) 61
AspLEI GCGC 2 cut(s) 141, 354
AspS9I GGNCC 3 cut(s) 38, 494, 692
AsuHPI GGTGA 1 cut(s) 86
AvaI CYCGRG 3 cut(s) 170, 355, 396
AvaII GGWCC 2 cut(s) 494, 692
BanI GGYRCC 1 cut(s) 351
BanII GRGCYC 1 cut(s) 111
BarI GAAGNNNNNNTAC 2 cut(s) 298, 330
BauI CACGAG 1 cut(s) 255
BbvI GCAGC 3 cut(s) 235, 352, 571
BccI CCATC 2 cut(s) 49, 281
BceAI ACGGC 1 cut(s) 161
BciT130I CCWGG 3 cut(s) 115, 570, 624
BciVI GTATCC 1 cut(s) 477
BcoDI GTCTC 2 cut(s) 113, 352
BfmI CTRYAG 2 cut(s) 642, 750
BfoI RGCGCY 1 cut(s) 355
BfuI GTATCC 1 cut(s) 477
BisI GCNGC 7 cut(s) 142, 249, 252, 326, 366, 585, 774
BlpI GCTNAGC 1 cut(s) 669
BlsI GCNGC 7 cut(s) 143, 250, 253, 327, 367, 586, 775
Bme1390I CCNGG 3 cut(s) 115, 570, 624
Bme18I GGWCC 2 cut(s) 494, 692
BmeT110I CYCGRG 3 cut(s) 170, 355, 396
BmgT120I GGNCC 3 cut(s) 38, 494, 692
BmiI GGNNCC 3 cut(s) 50, 353, 694
BmrFI CCNGG 3 cut(s) 115, 570, 624
BmrI ACTGGG 3 cut(s) 617, 690, 716
BmuI ACTGGG 3 cut(s) 617, 690, 716
BplI GAGNNNNNCTC 2 cut(s) 153, 185
BpmI CTGGAG 1 cut(s) 714
Bpu1102I GCTNAGC 1 cut(s) 669
Bsa29I ATCGAT 1 cut(s) 285
BsaHI GRCGYC 1 cut(s) 352
BsaI GGTCTC 1 cut(s) 352
BsaJI CCNNGG 5 cut(s) 90, 114, 329, 397, 569
BsaWI WCCGGW 1 cut(s) 241
Bsc4I CCNNNNNNNGG 5 cut(s) 241, 377, 476, 535, 536
Bse1I ACTGG 6 cut(s) 30, 52, 612, 696, 722, 731
Bse3DI GCAATG 1 cut(s) 666
BseBI CCWGG 3 cut(s) 115, 570, 624
BseCI ATCGAT 1 cut(s) 285
BseDI CCNNGG 5 cut(s) 90, 114, 329, 397, 569
BseLI CCNNNNNNNGG 5 cut(s) 241, 377, 476, 535, 536
BseMI GCAATG 1 cut(s) 666
BseMII CTCAG 3 cut(s) 334, 683, 819
BseNI ACTGG 6 cut(s) 30, 52, 612, 696, 722, 731
BseX3I CGGCCG 1 cut(s) 326
BseXI GCAGC 3 cut(s) 235, 352, 571
BseYI CCCAGC 1 cut(s) 839
Bsh1285I CGRYCG 1 cut(s) 329
BshFI GGCC 5 cut(s) 39, 176, 204, 328, 334
BshNI GGYRCC 1 cut(s) 351
BshVI ATCGAT 1 cut(s) 285
BsiEI CGRYCG 1 cut(s) 329
BsiHKCI CYCGRG 3 cut(s) 170, 355, 396
BsiSI CCGG 2 cut(s) 36, 242
BslFI GGGAC 1 cut(s) 586
BslI CCNNNNNNNGG 5 cut(s) 241, 377, 476, 535, 536
BsmAI GTCTC 2 cut(s) 113, 352
BsmFI GGGAC 1 cut(s) 586
BsnI GGCC 5 cut(s) 39, 176, 204, 328, 334
Bso31I GGTCTC 1 cut(s) 352
BsoBI CYCGRG 3 cut(s) 170, 355, 396
Bsp1286I GDGCHC 1 cut(s) 111
Bsp143I GATC 2 cut(s) 206, 268
Bsp1720I GCTNAGC 1 cut(s) 669
BspACI CCGC 6 cut(s) 142, 252, 295, 325, 536, 773
BspANI GGCC 5 cut(s) 39, 176, 204, 328, 334
BspCNI CTCAG 3 cut(s) 333, 682, 820
BspDI ATCGAT 1 cut(s) 285
BspLI GGNNCC 3 cut(s) 50, 353, 694
BspPI GGATC 2 cut(s) 201, 263
BspT107I GGYRCC 1 cut(s) 351
BspTNI GGTCTC 1 cut(s) 352
BsrDI GCAATG 1 cut(s) 666
BsrI ACTGG 6 cut(s) 30, 52, 612, 696, 722, 731
BssECI CCNNGG 5 cut(s) 90, 114, 329, 397, 569
BssMI GATC 2 cut(s) 206, 268
BssNI GRCGYC 1 cut(s) 352
BssSI CACGAG 1 cut(s) 255
BssT1I CCWWGG 1 cut(s) 90
Bst2BI CACGAG 1 cut(s) 255
Bst2UI CCWGG 3 cut(s) 115, 570, 624
Bst4CI ACNGT 2 cut(s) 577, 646
BstACI GRCGYC 1 cut(s) 352
BstAPI GCANNNNNTGC 2 cut(s) 665, 770
BstC8I GCNNGC 6 cut(s) 111, 293, 297, 386, 390, 666
BstDEI CTNAG 3 cut(s) 320, 669, 828
BstH2I RGCGCY 1 cut(s) 355
BstHHI GCGC 2 cut(s) 141, 354
BstKTI GATC 2 cut(s) 209, 271
BstMAI GTCTC 2 cut(s) 113, 352
BstMBI GATC 2 cut(s) 206, 268
BstMCI CGRYCG 1 cut(s) 329
BstMWI GCNNNNNNNGC 7 cut(s) 257, 331, 340, 349, 665, 670, 770
BstNI CCWGG 3 cut(s) 115, 570, 624
BstNSI RCATGY 1 cut(s) 388
BstSCI CCNGG 3 cut(s) 113, 568, 622
BstSFI CTRYAG 2 cut(s) 642, 750
BstV1I GCAGC 3 cut(s) 235, 352, 571
BstXI CCANNNNNNTGG 1 cut(s) 689
BstZI CGGCCG 1 cut(s) 326
Bsu15I ATCGAT 1 cut(s) 285
BsuI GTATCC 1 cut(s) 477
BsuRI GGCC 5 cut(s) 39, 176, 204, 328, 334
BsuTUI ATCGAT 1 cut(s) 285
BtsIMutI CAGTG 2 cut(s) 703, 729
Cac8I GCNNGC 6 cut(s) 111, 293, 297, 386, 390, 666
CaiI CAGNNNCTG 1 cut(s) 58
CfoI GCGC 2 cut(s) 141, 354
Cfr13I GGNCC 3 cut(s) 38, 494, 692
ClaI ATCGAT 1 cut(s) 285
CsiI ACCWGGT 1 cut(s) 622
CviAII CATG 3 cut(s) 136, 385, 650
DdeI CTNAG 3 cut(s) 320, 669, 828
DinI GGCGCC 1 cut(s) 353
DpnI GATC 2 cut(s) 208, 270
DpnII GATC 2 cut(s) 206, 268
DraIII CACNNNGTG 1 cut(s) 518
DrdI GACNNNNNNGTC 1 cut(s) 609
DseDI GACNNNNNNGTC 1 cut(s) 609
EaeI YGGCCR 1 cut(s) 326
EagI CGGCCG 1 cut(s) 326
EclXI CGGCCG 1 cut(s) 326
Eco130I CCWWGG 1 cut(s) 90
Eco24I GRGCYC 1 cut(s) 111
Eco31I GGTCTC 1 cut(s) 352
Eco47I GGWCC 2 cut(s) 494, 692
Eco52I CGGCCG 1 cut(s) 326
Eco57I CTGAAG 1 cut(s) 536
Eco88I CYCGRG 3 cut(s) 170, 355, 396
EcoRI GAATTC 1 cut(s) 61
EcoRII CCWGG 3 cut(s) 113, 568, 622
EcoT14I CCWWGG 1 cut(s) 90
EcoT22I ATGCAT 1 cut(s) 345
EcoT38I GRGCYC 1 cut(s) 111
EgeI GGCGCC 1 cut(s) 353
EheI GGCGCC 1 cut(s) 353
ErhI CCWWGG 1 cut(s) 90
FaeI CATG 3 cut(s) 139, 388, 653
FaqI GGGAC 1 cut(s) 586
FatI CATG 3 cut(s) 135, 384, 649
FauI CCCGC 2 cut(s) 288, 529
Fnu4HI GCNGC 7 cut(s) 142, 249, 252, 326, 366, 585, 774
FriOI GRGCYC 1 cut(s) 111
Fsp4HI GCNGC 7 cut(s) 142, 249, 252, 326, 366, 585, 774
GlaI GCGC 2 cut(s) 140, 353
GluI GCNGC 7 cut(s) 142, 249, 252, 326, 366, 585, 774
GsaI CCCAGC 1 cut(s) 843
GsuI CTGGAG 1 cut(s) 714
HaeII RGCGCY 1 cut(s) 355
HaeIII GGCC 5 cut(s) 39, 176, 204, 328, 334
HapII CCGG 2 cut(s) 36, 242
HhaI GCGC 2 cut(s) 141, 354
Hin1I GRCGYC 1 cut(s) 352
Hin1II CATG 3 cut(s) 139, 388, 653
Hin6I GCGC 2 cut(s) 139, 352
HinP1I GCGC 2 cut(s) 139, 352
HinfI GANTC 2 cut(s) 121, 166
HpaII CCGG 2 cut(s) 36, 242
HphI GGTGA 1 cut(s) 86
Hpy166II GTNNAC 2 cut(s) 523, 692
Hpy188I TCNGA 6 cut(s) 12, 161, 190, 236, 555, 829
Hpy188III TCNNGA 2 cut(s) 58, 170
Hpy8I GTNNAC 2 cut(s) 523, 692
HpyCH4III ACNGT 2 cut(s) 577, 646
HpyCH4V TGCA 6 cut(s) 343, 388, 485, 659, 707, 814
HpyF10VI GCNNNNNNNGC 7 cut(s) 257, 331, 340, 349, 665, 670, 770
HpyF3I CTNAG 3 cut(s) 320, 669, 828
Hsp92I GRCGYC 1 cut(s) 352
Hsp92II CATG 3 cut(s) 139, 388, 653
HspAI GCGC 2 cut(s) 139, 352
KasI GGCGCC 1 cut(s) 351
Kzo9I GATC 2 cut(s) 206, 268
LmnI GCTCC 2 cut(s) 373, 805
Lsp1109I GCAGC 3 cut(s) 235, 352, 571
MabI ACCWGGT 1 cut(s) 622
MaeIII GTNAC 3 cut(s) 74, 226, 709
MalI GATC 2 cut(s) 208, 270
MboI GATC 2 cut(s) 206, 268
MboII GAAGA 1 cut(s) 542
MhlI GDGCHC 1 cut(s) 111
MluCI AATT 5 cut(s) 61, 279, 301, 472, 683
Mly113I GGCGCC 1 cut(s) 352
MlyI GAGTC 1 cut(s) 115
MmeI TCCRAC 1 cut(s) 296
MnlI CCTC 6 cut(s) 166, 238, 324, 392, 407, 738
Mph1103I ATGCAT 1 cut(s) 345
MseI TTAA 2 cut(s) 579, 702
MslI CAYNNNNRTG 1 cut(s) 654
MspA1I CMGCKG 2 cut(s) 365, 839
MspI CCGG 2 cut(s) 36, 242
MspR9I CCNGG 3 cut(s) 115, 570, 624
MvaI CCWGG 3 cut(s) 115, 570, 624
MwoI GCNNNNNNNGC 7 cut(s) 257, 331, 340, 349, 665, 670, 770
NarI GGCGCC 1 cut(s) 352
NdeII GATC 2 cut(s) 206, 268
NlaIII CATG 3 cut(s) 139, 388, 653
NlaIV GGNNCC 3 cut(s) 50, 353, 694
NmeAIII GCCGAG 1 cut(s) 354
NmuCI GTSAC 2 cut(s) 74, 226
NsiI ATGCAT 1 cut(s) 345
NspI RCATGY 1 cut(s) 388
PaeI GCATGC 1 cut(s) 388
PaeR7I CTCGAG 1 cut(s) 170
PfeI GAWTC 1 cut(s) 166
PflMI CCANNNNNTGG 1 cut(s) 377
PkrI GCNGC 7 cut(s) 143, 250, 253, 327, 367, 586, 775
PleI GAGTC 1 cut(s) 115
PluTI GGCGCC 1 cut(s) 355
PpsI GAGTC 1 cut(s) 115
Psp6I CCWGG 3 cut(s) 113, 568, 622
PspFI CCCAGC 1 cut(s) 839
PspGI CCWGG 3 cut(s) 113, 568, 622
PspN4I GGNNCC 3 cut(s) 50, 353, 694
PspPI GGNCC 3 cut(s) 38, 494, 692
PstNI CAGNNNCTG 1 cut(s) 58
PvuII CAGCTG 2 cut(s) 365, 839
RseI CAYNNNNRTG 1 cut(s) 654
SaqAI TTAA 2 cut(s) 579, 702
SatI GCNGC 7 cut(s) 142, 249, 252, 326, 366, 585, 774
Sau3AI GATC 2 cut(s) 206, 268
Sau96I GGNCC 3 cut(s) 38, 494, 692
SchI GAGTC 1 cut(s) 115
ScrFI CCNGG 3 cut(s) 115, 570, 624
SduI GDGCHC 1 cut(s) 111
SexAI ACCWGGT 1 cut(s) 622
SfcI CTRYAG 2 cut(s) 642, 750
SfoI GGCGCC 1 cut(s) 353
Sfr274I CTCGAG 1 cut(s) 170
SinI GGWCC 2 cut(s) 494, 692
SlaI CTCGAG 1 cut(s) 170
SmiMI CAYNNNNRTG 1 cut(s) 654
SmlI CTYRAG 1 cut(s) 170
SmoI CTYRAG 1 cut(s) 170
SphI GCATGC 1 cut(s) 388
Sse9I AATT 5 cut(s) 61, 279, 301, 472, 683
SsiI CCGC 6 cut(s) 142, 252, 295, 325, 536, 773
SspDI GGCGCC 1 cut(s) 351
StyD4I CCNGG 3 cut(s) 113, 568, 622
StyI CCWWGG 1 cut(s) 90
TaaI ACNGT 2 cut(s) 577, 646
TaqI TCGA 4 cut(s) 23, 150, 171, 285
TasI AATT 5 cut(s) 61, 279, 301, 472, 683
TauI GCSGC 4 cut(s) 144, 254, 328, 776
TfiI GAWTC 1 cut(s) 166
Tru1I TTAA 2 cut(s) 579, 702
Tru9I TTAA 2 cut(s) 579, 702
TscAI CASTG 2 cut(s) 703, 729
TseFI GTSAC 2 cut(s) 74, 226
TseI GCWGC 3 cut(s) 248, 365, 584
Tsp45I GTSAC 2 cut(s) 74, 226
TspDTI ATGAA 1 cut(s) 638
TspRI CASTG 2 cut(s) 703, 729
Van91I CCANNNNNTGG 1 cut(s) 377
VpaK11BI GGWCC 2 cut(s) 494, 692
XapI RAATTY 1 cut(s) 61
XceI RCATGY 1 cut(s) 388
XhoI CTCGAG 1 cut(s) 170
Zsp2I ATGCAT 1 cut(s) 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.