Rorug02G0060800

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0001423
Physical Location & Seq
Forward (+)
4712711 .. 4713837
1127 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0060800.1

Sequence Viewer

Length: 435 bp
ATGGATGTCTTGATTGCTACAGGCTTTGTTATGGTCTACAAGGACCCTTACAAGCCTGCGACAACGTCCCTTATTACAACCCTAACACACAAAATTGATGTCCTCTCGTTGGATCTCCACCCAACCAGCCCCAACCTTCTTTGCAGTATAGACAGAGGCTCAAAAATATTCTACTGGAACATCCAGCAACCTGTTAAACCACTCGAGATAAGATTCCCACCTGGTTCAGTTAGGCTGCTTGCTGCAGCAGTAGCAAACCATGTCTTCCAACTTGATAGCGATACAGGAGTGATTCTTAGACGACTGGAAGGGGACAAGTACCCTGTTCTCTCTCGGTGCTGGGATGAAAATGGCCAAATGATGGCATCAGTAAGTGAAGACTTGCTCAACGTTTGGGATGGTCTTCCAAATAGCGCTCACGCTCCTTCAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

144

Amino Acids

15.98

Weight (kDa)

5.71

Isoelectric Point (pI)

41.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 361
AccI GTMKAC 1 cut(s) 36
AclI AACGTT 1 cut(s) 390
AclWI GGATC 1 cut(s) 120
AcoI YGGCCR 1 cut(s) 352
AcuI CTGAAG 1 cut(s) 411
AfaI GTAC 1 cut(s) 320
AfeI AGCGCT 1 cut(s) 415
AfiI CCNNNNNNNGG 2 cut(s) 109, 361
AjnI CCWGG 1 cut(s) 220
AlwI GGATC 1 cut(s) 120
Ama87I CYCGRG 1 cut(s) 203
Aor51HI AGCGCT 1 cut(s) 415
AoxI GGCC 1 cut(s) 352
ApeKI GCWGC 3 cut(s) 235, 242, 245
ArsI GACNNNNNNTTYG 2 cut(s) 84, 116
AspLEI GCGC 1 cut(s) 416
AspS9I GGNCC 1 cut(s) 43
AvaI CYCGRG 1 cut(s) 203
AvaII GGWCC 1 cut(s) 43
BaeI ACNNNNGTAYC 2 cut(s) 273, 306
BalI TGGCCA 1 cut(s) 354
BbsI GAAGAC 3 cut(s) 256, 384, 395
BbvI GCAGC 3 cut(s) 222, 229, 257
BccI CCATC 2 cut(s) 355, 392
BciT130I CCWGG 1 cut(s) 222
BfmI CTRYAG 2 cut(s) 18, 243
BfoI RGCGCY 1 cut(s) 417
BisI GCNGC 3 cut(s) 236, 243, 246
BlsI GCNGC 3 cut(s) 237, 244, 247
Bme1390I CCNGG 1 cut(s) 222
Bme18I GGWCC 1 cut(s) 43
BmeT110I CYCGRG 1 cut(s) 203
BmgT120I GGNCC 1 cut(s) 43
BmiI GGNNCC 1 cut(s) 45
BmrFI CCNGG 1 cut(s) 222
BmsI GCATC 1 cut(s) 374
BpiI GAAGAC 3 cut(s) 256, 384, 395
Bsc4I CCNNNNNNNGG 2 cut(s) 109, 361
Bse1I ACTGG 2 cut(s) 179, 309
BseBI CCWGG 1 cut(s) 222
BseGI GGATG 4 cut(s) 10, 180, 349, 403
BseLI CCNNNNNNNGG 2 cut(s) 109, 361
BseNI ACTGG 2 cut(s) 179, 309
BseXI GCAGC 3 cut(s) 222, 229, 257
BseYI CCCAGC 1 cut(s) 339
BshFI GGCC 1 cut(s) 354
BsiHKCI CYCGRG 1 cut(s) 203
BslFI GGGAC 2 cut(s) 52, 326
BslI CCNNNNNNNGG 2 cut(s) 109, 361
BsmFI GGGAC 2 cut(s) 52, 326
BsnI GGCC 1 cut(s) 354
BsoBI CYCGRG 1 cut(s) 203
Bsp143I GATC 1 cut(s) 112
BspANI GGCC 1 cut(s) 354
BspLI GGNNCC 1 cut(s) 45
BspMAI CTGCAG 1 cut(s) 247
BspPI GGATC 1 cut(s) 120
BsrI ACTGG 2 cut(s) 179, 309
BssMI GATC 1 cut(s) 112
Bst2UI CCWGG 1 cut(s) 222
BstC8I GCNNGC 2 cut(s) 57, 240
BstDEI CTNAG 1 cut(s) 296
BstF5I GGATG 4 cut(s) 10, 180, 349, 403
BstH2I RGCGCY 1 cut(s) 417
BstHHI GCGC 1 cut(s) 416
BstKTI GATC 1 cut(s) 115
BstMBI GATC 1 cut(s) 112
BstMWI GCNNNNNNNGC 1 cut(s) 251
BstNI CCWGG 1 cut(s) 222
BstSCI CCNGG 1 cut(s) 220
BstSFI CTRYAG 2 cut(s) 18, 243
BstV1I GCAGC 3 cut(s) 222, 229, 257
BstV2I GAAGAC 3 cut(s) 256, 384, 395
BstX2I RGATCY 1 cut(s) 112
BstYI RGATCY 1 cut(s) 112
BsuRI GGCC 1 cut(s) 354
BtsCI GGATG 4 cut(s) 10, 180, 349, 403
Cac8I GCNNGC 2 cut(s) 57, 240
CfoI GCGC 1 cut(s) 416
Cfr13I GGNCC 1 cut(s) 43
CsiI ACCWGGT 1 cut(s) 220
Csp6I GTAC 1 cut(s) 319
CviAII CATG 1 cut(s) 260
CviJI RGCY 6 cut(s) 24, 55, 129, 159, 235, 354
CviKI_1 RGCY 6 cut(s) 24, 55, 129, 159, 235, 354
CviQI GTAC 1 cut(s) 319
DdeI CTNAG 1 cut(s) 296
DpnI GATC 1 cut(s) 114
DpnII GATC 1 cut(s) 112
EaeI YGGCCR 1 cut(s) 352
Eco47I GGWCC 1 cut(s) 43
Eco47III AGCGCT 1 cut(s) 415
Eco57I CTGAAG 1 cut(s) 411
Eco88I CYCGRG 1 cut(s) 203
EcoO109I RGGNCCY 1 cut(s) 43
EcoRII CCWGG 1 cut(s) 220
FaeI CATG 1 cut(s) 263
FaiI YATR 3 cut(s) 32, 149, 261
FaqI GGGAC 2 cut(s) 52, 326
FatI CATG 1 cut(s) 259
FblI GTMKAC 1 cut(s) 36
Fnu4HI GCNGC 3 cut(s) 236, 243, 246
FokI GGATG 4 cut(s) 17, 167, 356, 410
Fsp4HI GCNGC 3 cut(s) 236, 243, 246
GlaI GCGC 1 cut(s) 415
GluI GCNGC 3 cut(s) 236, 243, 246
GsaI CCCAGC 1 cut(s) 343
HaeII RGCGCY 1 cut(s) 417
HaeIII GGCC 1 cut(s) 354
HhaI GCGC 1 cut(s) 416
Hin1II CATG 1 cut(s) 263
Hin6I GCGC 1 cut(s) 414
HinP1I GCGC 1 cut(s) 414
HinfI GANTC 2 cut(s) 213, 292
Hpy166II GTNNAC 1 cut(s) 37
Hpy188III TCNNGA 2 cut(s) 10, 205
Hpy8I GTNNAC 1 cut(s) 37
HpyAV CCTTC 3 cut(s) 146, 302, 435
HpyCH4IV ACGT 2 cut(s) 65, 390
HpyCH4V TGCA 2 cut(s) 144, 245
HpyF10VI GCNNNNNNNGC 1 cut(s) 251
HpyF3I CTNAG 1 cut(s) 296
HpySE526I ACGT 2 cut(s) 65, 390
Hsp92II CATG 1 cut(s) 263
HspAI GCGC 1 cut(s) 414
Kzo9I GATC 1 cut(s) 112
LmnI GCTCC 1 cut(s) 427
Lsp1109I GCAGC 3 cut(s) 222, 229, 257
LweI GCATC 1 cut(s) 374
MabI ACCWGGT 1 cut(s) 220
MaeII ACGT 2 cut(s) 65, 390
MalI GATC 1 cut(s) 114
MboI GATC 1 cut(s) 112
MboII GAAGA 3 cut(s) 256, 389, 395
MflI RGATCY 1 cut(s) 112
MlsI TGGCCA 1 cut(s) 354
MluCI AATT 1 cut(s) 93
MluNI TGGCCA 1 cut(s) 354
MmeI TCCRAC 2 cut(s) 90, 292
MnlI CCTC 2 cut(s) 113, 149
Mox20I TGGCCA 1 cut(s) 354
MscI TGGCCA 1 cut(s) 354
MseI TTAA 1 cut(s) 195
Msp20I TGGCCA 1 cut(s) 354
MspR9I CCNGG 1 cut(s) 222
MvaI CCWGG 1 cut(s) 222
MwoI GCNNNNNNNGC 1 cut(s) 251
NdeII GATC 1 cut(s) 112
NlaIII CATG 1 cut(s) 263
NlaIV GGNNCC 1 cut(s) 45
PaeR7I CTCGAG 1 cut(s) 203
PfeI GAWTC 2 cut(s) 213, 292
PflFI GACNNNGTC 1 cut(s) 64
PflMI CCANNNNNTGG 1 cut(s) 361
PkrI GCNGC 3 cut(s) 237, 244, 247
PpuMI RGGWCCY 1 cut(s) 43
Psp1406I AACGTT 1 cut(s) 390
Psp5II RGGWCCY 1 cut(s) 43
Psp6I CCWGG 1 cut(s) 220
PspFI CCCAGC 1 cut(s) 339
PspGI CCWGG 1 cut(s) 220
PspN4I GGNNCC 1 cut(s) 45
PspPI GGNCC 1 cut(s) 43
PspPPI RGGWCCY 1 cut(s) 43
PstI CTGCAG 1 cut(s) 247
PsuI RGATCY 1 cut(s) 112
PsyI GACNNNGTC 1 cut(s) 64
RsaI GTAC 1 cut(s) 320
RsaNI GTAC 1 cut(s) 319
SaqAI TTAA 1 cut(s) 195
SatI GCNGC 3 cut(s) 236, 243, 246
Sau3AI GATC 1 cut(s) 112
Sau96I GGNCC 1 cut(s) 43
ScrFI CCNGG 1 cut(s) 222
SetI ASST 5 cut(s) 68, 138, 193, 223, 393
SexAI ACCWGGT 1 cut(s) 220
SfaNI GCATC 1 cut(s) 374
SfcI CTRYAG 2 cut(s) 18, 243
Sfr274I CTCGAG 1 cut(s) 203
SinI GGWCC 1 cut(s) 43
SlaI CTCGAG 1 cut(s) 203
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
Sse9I AATT 1 cut(s) 93
SspI AATATT 1 cut(s) 168
StyD4I CCNGG 1 cut(s) 220
TaiI ACGT 2 cut(s) 68, 393
TaqI TCGA 1 cut(s) 204
TasI AATT 1 cut(s) 93
TfiI GAWTC 2 cut(s) 213, 292
Tru1I TTAA 1 cut(s) 195
Tru9I TTAA 1 cut(s) 195
TseI GCWGC 3 cut(s) 235, 242, 245
TspDTI ATGAA 1 cut(s) 360
Tth111I GACNNNGTC 1 cut(s) 64
Van91I CCANNNNNTGG 1 cut(s) 361
VpaK11BI GGWCC 1 cut(s) 43
XhoI CTCGAG 1 cut(s) 203
XmiI GTMKAC 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.