Rmu_sc0038498.1_g000001

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0038498.1
OG0001423
Physical Location & Seq
Reverse (-)
1 .. 1556
1556 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0038498.1_g000001.1.cds

Sequence Viewer

Length: 415 bp
atgaaaaagtggttttatcccaaatcaatgtatgcaacttacgggccggaatacgtttattcacagggtgctcacaattcttatgcgggtcagcagtatcttcagatatatggagttccagggacggttaatactctgtattcctatgcacaactgggtcaaaccattccaggtggtcagggttatccaacagtacacagatatgcaatgcctactcagcagataatcccatttggacccagtgttaatgcagtaacaactacaccagtccctacaattcaagcaccatattccacagctttatcgcttttaatcaggtaccctttgactgcagcaggactaagagcagcagaactgctacttaggtggcggactacagatctagccttgcaatttcttattttgcattctagag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000381 GO:0001501 GO:0001756 GO:0001947 GO:0002009 GO:0003002 GO:0003007 GO:0003143 GO:0003228 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006417 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0007368 GO:0007389 GO:0007507 GO:0007517 GO:0007519 GO:0008150 GO:0008152 GO:0009653 GO:0009790 GO:0009792 GO:0009799 GO:0009855 GO:0009887 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009896 GO:0009952 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010638 GO:0010720 GO:0010830 GO:0010831 GO:0014706 GO:0016070 GO:0016071 GO:0016202 GO:0017091 GO:0017148 GO:0019219 GO:0019222 GO:0022603 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031330 GO:0031331 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032956 GO:0032970 GO:0033043 GO:0033554 GO:0034248 GO:0034249 GO:0034641 GO:0035050 GO:0035239 GO:0035282 GO:0035295 GO:0035925 GO:0036002 GO:0043009 GO:0043170 GO:0043484 GO:0043487 GO:0043488 GO:0043489 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0045595 GO:0045597 GO:0045661 GO:0045663 GO:0045844 GO:0045934 GO:0045935 GO:0046483 GO:0048024 GO:0048255 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048562 GO:0048568 GO:0048598 GO:0048634 GO:0048636 GO:0048641 GO:0048643 GO:0048646 GO:0048701 GO:0048702 GO:0048704 GO:0048705 GO:0048706 GO:0048729 GO:0048731 GO:0048856 GO:0050684 GO:0050779 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051147 GO:0051149 GO:0051153 GO:0051155 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051493 GO:0051495 GO:0051716 GO:0060255 GO:0060284 GO:0060297 GO:0060298 GO:0060429 GO:0060537 GO:0060538 GO:0060562 GO:0061013 GO:0061014 GO:0061053 GO:0061061 GO:0061157 GO:0061158 GO:0061371 GO:0065007 GO:0065008 GO:0071704 GO:0072358 GO:0072359 GO:0080090 GO:0090304 GO:0097157 GO:0097159 GO:0110020 GO:1901360 GO:1901363 GO:1901861 GO:1901863 GO:1902115 GO:1902117 GO:1902369 GO:1902373 GO:1902809 GO:1902811 GO:1902903 GO:1902905 GO:1903311 GO:1903312 GO:1903313 GO:1904888 GO:1905868 GO:1905870 GO:1990715 GO:1990825 GO:2000026 GO:2000112 GO:2000113 GO:2000736 GO:2000738 GO:2000765 GO:2000766 GO:2001014 GO:2001016
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

138

Amino Acids

15.38

Weight (kDa)

9.62

Isoelectric Point (pI)

49.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 318
AccB1I GGYRCC 1 cut(s) 318
AciI CCGC 2 cut(s) 86, 370
AcuI CTGAAG 1 cut(s) 86
AdeI CACNNNGTG 1 cut(s) 68
AfaI GTAC 2 cut(s) 195, 320
AgsI TTSAA 1 cut(s) 281
AjnI CCWGG 2 cut(s) 118, 169
AluBI AGCT 1 cut(s) 299
AluI AGCT 1 cut(s) 299
Alw21I GWGCWC 1 cut(s) 73
AoxI GGCC 1 cut(s) 44
ApeKI GCWGC 2 cut(s) 332, 347
Asp718I GGTACC 1 cut(s) 318
AspS9I GGNCC 2 cut(s) 44, 236
AvaII GGWCC 1 cut(s) 236
BanI GGYRCC 1 cut(s) 318
Bbv12I GWGCWC 1 cut(s) 73
BbvI GCAGC 2 cut(s) 344, 359
BciT130I CCWGG 2 cut(s) 120, 171
BfaI CTAG 2 cut(s) 383, 411
BfmI CTRYAG 2 cut(s) 330, 375
BglII AGATCT 1 cut(s) 379
BisI GCNGC 2 cut(s) 333, 348
BlsI GCNGC 2 cut(s) 334, 349
Bme1390I CCNGG 2 cut(s) 120, 171
Bme18I GGWCC 1 cut(s) 236
BmgT120I GGNCC 2 cut(s) 44, 236
BmiI GGNNCC 2 cut(s) 238, 320
BmrFI CCNGG 2 cut(s) 120, 171
BmrI ACTGGG 2 cut(s) 164, 234
BmuI ACTGGG 2 cut(s) 164, 234
BsaJI CCNNGG 1 cut(s) 119
Bse1I ACTGG 3 cut(s) 159, 240, 266
Bse3DI GCAATG 1 cut(s) 213
BseBI CCWGG 2 cut(s) 120, 171
BseDI CCNNGG 1 cut(s) 119
BseMI GCAATG 1 cut(s) 213
BseMII CTCAG 1 cut(s) 230
BseNI ACTGG 3 cut(s) 159, 240, 266
BseXI GCAGC 2 cut(s) 344, 359
BshFI GGCC 1 cut(s) 46
BshNI GGYRCC 1 cut(s) 318
BsiHKAI GWGCWC 1 cut(s) 73
BsiSI CCGG 1 cut(s) 47
BslFI GGGAC 2 cut(s) 136, 254
BsmFI GGGAC 2 cut(s) 136, 254
BsmI GAATGC 1 cut(s) 406
BsnI GGCC 1 cut(s) 46
Bsp1286I GDGCHC 1 cut(s) 73
Bsp143I GATC 1 cut(s) 379
BspACI CCGC 2 cut(s) 86, 370
BspANI GGCC 1 cut(s) 46
BspCNI CTCAG 1 cut(s) 229
BspLI GGNNCC 2 cut(s) 238, 320
BspMAI CTGCAG 1 cut(s) 334
BspT107I GGYRCC 1 cut(s) 318
BsrDI GCAATG 1 cut(s) 213
BsrI ACTGG 3 cut(s) 159, 240, 266
BssECI CCNNGG 1 cut(s) 119
BssMI GATC 1 cut(s) 379
Bst2UI CCWGG 2 cut(s) 120, 171
Bst4CI ACNGT 2 cut(s) 127, 193
BstDEI CTNAG 3 cut(s) 216, 341, 362
BstKTI GATC 1 cut(s) 382
BstMBI GATC 1 cut(s) 379
BstMWI GCNNNNNNNGC 1 cut(s) 217
BstNI CCWGG 2 cut(s) 120, 171
BstSCI CCNGG 2 cut(s) 118, 169
BstSFI CTRYAG 2 cut(s) 330, 375
BstV1I GCAGC 2 cut(s) 344, 359
BstX2I RGATCY 1 cut(s) 379
BstYI RGATCY 1 cut(s) 379
BsuRI GGCC 1 cut(s) 46
BtsIMutI CAGTG 1 cut(s) 247
Cfr13I GGNCC 2 cut(s) 44, 236
Csp6I GTAC 2 cut(s) 194, 319
CviJI RGCY 3 cut(s) 46, 299, 386
CviKI_1 RGCY 3 cut(s) 46, 299, 386
CviQI GTAC 2 cut(s) 194, 319
DdeI CTNAG 3 cut(s) 216, 341, 362
DpnI GATC 1 cut(s) 381
DpnII GATC 1 cut(s) 379
DraIII CACNNNGTG 1 cut(s) 68
EciI GGCGGA 1 cut(s) 385
Eco47I GGWCC 1 cut(s) 236
Eco57I CTGAAG 1 cut(s) 86
EcoRII CCWGG 2 cut(s) 118, 169
FaiI YATR 7 cut(s) 33, 84, 109, 111, 147, 204, 289
FaqI GGGAC 2 cut(s) 136, 254
FauI CCCGC 1 cut(s) 79
Fnu4HI GCNGC 2 cut(s) 333, 348
Fsp4HI GCNGC 2 cut(s) 333, 348
FspBI CTAG 2 cut(s) 383, 411
GluI GCNGC 2 cut(s) 333, 348
HaeIII GGCC 1 cut(s) 46
HapII CCGG 1 cut(s) 47
HpaII CCGG 1 cut(s) 47
Hpy166II GTNNAC 1 cut(s) 196
Hpy188I TCNGA 1 cut(s) 105
Hpy188III TCNNGA 1 cut(s) 411
Hpy8I GTNNAC 1 cut(s) 196
HpyCH4III ACNGT 2 cut(s) 127, 193
HpyCH4IV ACGT 1 cut(s) 54
HpyCH4V TGCA 7 cut(s) 35, 149, 206, 251, 332, 391, 406
HpyF10VI GCNNNNNNNGC 1 cut(s) 217
HpyF3I CTNAG 3 cut(s) 216, 341, 362
HpySE526I ACGT 1 cut(s) 54
KpnI GGTACC 1 cut(s) 322
Kzo9I GATC 1 cut(s) 379
Lsp1109I GCAGC 2 cut(s) 344, 359
MaeI CTAG 2 cut(s) 383, 411
MaeII ACGT 1 cut(s) 54
MaeIII GTNAC 1 cut(s) 253
MalI GATC 1 cut(s) 381
MboI GATC 1 cut(s) 379
MboII GAAGA 1 cut(s) 92
MflI RGATCY 1 cut(s) 379
MhlI GDGCHC 1 cut(s) 73
MluCI AATT 3 cut(s) 76, 276, 392
MmeI TCCRAC 1 cut(s) 212
MseI TTAA 3 cut(s) 129, 246, 311
MslI CAYNNNNRTG 1 cut(s) 201
MspI CCGG 1 cut(s) 47
MspR9I CCNGG 2 cut(s) 120, 171
Mva1269I GAATGC 1 cut(s) 406
MvaI CCWGG 2 cut(s) 120, 171
MwoI GCNNNNNNNGC 1 cut(s) 217
NdeII GATC 1 cut(s) 379
NlaIV GGNNCC 2 cut(s) 238, 320
PctI GAATGC 1 cut(s) 406
PkrI GCNGC 2 cut(s) 334, 349
Psp6I CCWGG 2 cut(s) 118, 169
PspGI CCWGG 2 cut(s) 118, 169
PspN4I GGNNCC 2 cut(s) 238, 320
PspPI GGNCC 2 cut(s) 44, 236
PstI CTGCAG 1 cut(s) 334
PsuI RGATCY 1 cut(s) 379
RsaI GTAC 2 cut(s) 195, 320
RsaNI GTAC 2 cut(s) 194, 319
RseI CAYNNNNRTG 1 cut(s) 201
SaqAI TTAA 3 cut(s) 129, 246, 311
SatI GCNGC 2 cut(s) 333, 348
Sau3AI GATC 1 cut(s) 379
Sau96I GGNCC 2 cut(s) 44, 236
ScrFI CCNGG 2 cut(s) 120, 171
SduI GDGCHC 1 cut(s) 73
SetI ASST 5 cut(s) 57, 175, 301, 320, 368
SfcI CTRYAG 2 cut(s) 330, 375
SinI GGWCC 1 cut(s) 236
SmiMI CAYNNNNRTG 1 cut(s) 201
Sse9I AATT 3 cut(s) 76, 276, 392
SsiI CCGC 2 cut(s) 86, 370
SspMI CTAG 2 cut(s) 383, 411
StyD4I CCNGG 2 cut(s) 118, 169
TaaI ACNGT 2 cut(s) 127, 193
TaiI ACGT 1 cut(s) 57
TasI AATT 3 cut(s) 76, 276, 392
TatI WGTACW 1 cut(s) 193
Tru1I TTAA 3 cut(s) 129, 246, 311
Tru9I TTAA 3 cut(s) 129, 246, 311
TscAI CASTG 1 cut(s) 247
TseI GCWGC 2 cut(s) 332, 347
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 247
VpaK11BI GGWCC 1 cut(s) 236
XbaI TCTAGA 1 cut(s) 410
XspI CTAG 2 cut(s) 383, 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.