AT1G20880

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0001423
Physical Location & Seq
Reverse (-)
7262009 .. 7265555
3547 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G20880.3

Sequence Viewer

Length: 825 bp
ATGGCGTATCATTCGATTCCGAGCTCTGGGTTTCATTACTTGAATTCTCCTTTTGGTGACACAACCTTTACTAAAGTCTTTGTTGGTGGCCTTGCCTGGGAGACTCAAAGCGAGACTCTTCGTCGGCATTTCGATCAATATGGTGATATCCTTGAGGCTGTCGTTATTACTGATAAGAACACTGGTCGATCCAAAGGTTATGGCTTTGTGACTTTCCGAGATCCAGAGGCTGCTAGGAGAGCCTGTGTCGATCCAACACCTATTATAGATGGCAGACGAGCGAATTGTAATCTCGCTTCTCTTGGGAGATCTAGGCCTCCAATGCAATATGCAGTGATACCCCATGCTCCTGGACGGGTAAGACCTCCTTCCCCATATGTTGGAAGTGTGCAGAGTCCTCGCGGTTTGCATTTTGGAAGCCATCCGTATCACCAACCCCCTACTTATAACTACCAACAAGGAGTGGTGTACCCTTATGGGGTTACACCATATGGACCTGACTACATGTACTCACAGTCTCAGGGTTTCTATGGTCCTTACATGGGTCAACAGTACCTTCAGGTTTATGGAGTACCTGGGGCAGTTAACTCACCGGGTTATCAATATGGGCAACTGAGCCATACTATTCCTGGTGCTCACGGTTATACAGCGGGTCAAGGTTATTCACATCCAGGAAGTCATGTTCTACAGCTTGGTGCCACTTCACCTATGTCTGCTATTCAATCTCCATACCCTTCTCCTTCAGCTCCAACGCACCAACGTGTCATCGTCCAGACTCCTCCTCAGTATATACAGAGTAGCGGTTCTGATCAGACAACAGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000381 GO:0001501 GO:0001756 GO:0001947 GO:0002009 GO:0003002 GO:0003007 GO:0003143 GO:0003228 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006417 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0007368 GO:0007389 GO:0007507 GO:0007517 GO:0007519 GO:0008150 GO:0008152 GO:0009653 GO:0009790 GO:0009792 GO:0009799 GO:0009855 GO:0009887 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009896 GO:0009952 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010638 GO:0010720 GO:0010830 GO:0010831 GO:0014706 GO:0016070 GO:0016071 GO:0016202 GO:0017091 GO:0017148 GO:0019219 GO:0019222 GO:0022603 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031330 GO:0031331 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032956 GO:0032970 GO:0033043 GO:0033554 GO:0034248 GO:0034249 GO:0034641 GO:0035050 GO:0035239 GO:0035282 GO:0035295 GO:0035925 GO:0036002 GO:0043009 GO:0043170 GO:0043484 GO:0043487 GO:0043488 GO:0043489 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0045595 GO:0045597 GO:0045661 GO:0045663 GO:0045844 GO:0045934 GO:0045935 GO:0046483 GO:0048024 GO:0048255 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048562 GO:0048568 GO:0048598 GO:0048634 GO:0048636 GO:0048641 GO:0048643 GO:0048646 GO:0048701 GO:0048702 GO:0048704 GO:0048705 GO:0048706 GO:0048729 GO:0048731 GO:0048856 GO:0050684 GO:0050779 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051147 GO:0051149 GO:0051153 GO:0051155 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051493 GO:0051495 GO:0051716 GO:0060255 GO:0060284 GO:0060297 GO:0060298 GO:0060429 GO:0060537 GO:0060538 GO:0060562 GO:0061013 GO:0061014 GO:0061053 GO:0061061 GO:0061157 GO:0061158 GO:0061371 GO:0065007 GO:0065008 GO:0071704 GO:0072358 GO:0072359 GO:0080090 GO:0090304 GO:0097157 GO:0097159 GO:0110020 GO:1901360 GO:1901363 GO:1901861 GO:1901863 GO:1902115 GO:1902117 GO:1902369 GO:1902373 GO:1902809 GO:1902811 GO:1902903 GO:1902905 GO:1903311 GO:1903312 GO:1903313 GO:1904888 GO:1905868 GO:1905870 GO:1990715 GO:1990825 GO:2000026 GO:2000112 GO:2000113 GO:2000736 GO:2000738 GO:2000765 GO:2000766 GO:2001014 GO:2001016
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

274

Amino Acids

29.9

Weight (kDa)

8.93

Isoelectric Point (pI)

59.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 26 - 81 2.4e-17 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 447
AccB1I GGYRCC 1 cut(s) 695
AccB7I CCANNNNNTGG 1 cut(s) 380
AccII CGCG 1 cut(s) 402
AciI CCGC 3 cut(s) 402, 650, 801
AclWI GGATC 3 cut(s) 183, 215, 245
AcsI RAATTY 1 cut(s) 43
AcuI CTGAAG 2 cut(s) 542, 726
AfaI GTAC 4 cut(s) 470, 509, 554, 573
AfiI CCNNNNNNNGG 5 cut(s) 26, 97, 380, 478, 542
AflIII ACRYGT 2 cut(s) 504, 760
AgsI TTSAA 2 cut(s) 43, 722
AhdI GACNNNNNGTC 1 cut(s) 120
AjnI CCWGG 5 cut(s) 95, 349, 574, 628, 670
AleI CACNNNNGTG 1 cut(s) 759
AloI GAACNNNNNNTCC 2 cut(s) 666, 698
AluBI AGCT 3 cut(s) 24, 691, 746
AluI AGCT 3 cut(s) 24, 691, 746
Alw21I GWGCWC 2 cut(s) 26, 637
Alw26I GTCTC 3 cut(s) 95, 107, 522
AlwI GGATC 3 cut(s) 183, 215, 245
AlwNI CAGNNNCTG 1 cut(s) 230
AoxI GGCC 2 cut(s) 88, 314
ApeKI GCWGC 1 cut(s) 230
ApoI RAATTY 1 cut(s) 43
AspS9I GGNCC 2 cut(s) 494, 533
AsuC2I CCSGG 1 cut(s) 594
AsuHPI GGTGA 5 cut(s) 68, 155, 422, 582, 696
AvaII GGWCC 2 cut(s) 494, 533
BanI GGYRCC 1 cut(s) 695
BanII GRGCYC 1 cut(s) 26
BarI GAAGNNNNNNTAC 2 cut(s) 280, 312
Bbv12I GWGCWC 2 cut(s) 26, 637
BbvI GCAGC 1 cut(s) 217
BccI CCATC 2 cut(s) 263, 429
BcgI CGANNNNNNTGC 2 cut(s) 380, 414
BciT130I CCWGG 5 cut(s) 97, 351, 576, 630, 672
BclI TGATCA 1 cut(s) 808
BcnI CCSGG 1 cut(s) 594
BcoDI GTCTC 3 cut(s) 95, 107, 522
BfaI CTAG 2 cut(s) 234, 312
BfmI CTRYAG 1 cut(s) 686
BglII AGATCT 1 cut(s) 308
BisI GCNGC 1 cut(s) 231
BlsI GCNGC 1 cut(s) 232
Bme1390I CCNGG 6 cut(s) 97, 351, 576, 594, 630, 672
Bme18I GGWCC 2 cut(s) 494, 533
BmeRI GACNNNNNGTC 1 cut(s) 120
BmgT120I GGNCC 2 cut(s) 494, 533
BmiI GGNNCC 1 cut(s) 697
BmrFI CCNGG 6 cut(s) 97, 351, 576, 594, 630, 672
BpuEI CTTGAG 1 cut(s) 173
BpuMI CCSGG 1 cut(s) 594
BsaJI CCNNGG 2 cut(s) 96, 575
BsaXI ACNNNNNCTCC 2 cut(s) 229, 259
Bsc4I CCNNNNNNNGG 5 cut(s) 26, 97, 380, 478, 542
Bse1I ACTGG 1 cut(s) 187
BseBI CCWGG 5 cut(s) 97, 351, 576, 630, 672
BseDI CCNNGG 2 cut(s) 96, 575
BseGI GGATG 2 cut(s) 421, 667
BseLI CCNNNNNNNGG 5 cut(s) 26, 97, 380, 478, 542
BseMII CTCAG 3 cut(s) 533, 605, 797
BseNI ACTGG 1 cut(s) 187
BseRI GAGGAG 2 cut(s) 768, 771
BseXI GCAGC 1 cut(s) 217
BsgI GTGCAG 1 cut(s) 410
Bsh1236I CGCG 1 cut(s) 402
BshFI GGCC 2 cut(s) 90, 316
BshNI GGYRCC 1 cut(s) 695
BsiHKAI GWGCWC 2 cut(s) 26, 637
BsiSI CCGG 1 cut(s) 593
BslI CCNNNNNNNGG 5 cut(s) 26, 97, 380, 478, 542
BsmAI GTCTC 3 cut(s) 95, 107, 522
BsnI GGCC 2 cut(s) 90, 316
Bsp1286I GDGCHC 2 cut(s) 26, 637
Bsp143I GATC 6 cut(s) 133, 188, 220, 250, 308, 808
BspACI CCGC 3 cut(s) 402, 650, 801
BspANI GGCC 2 cut(s) 90, 316
BspCNI CTCAG 3 cut(s) 532, 606, 796
BspFNI CGCG 1 cut(s) 402
BspLI GGNNCC 1 cut(s) 697
BspPI GGATC 3 cut(s) 183, 215, 245
BspT107I GGYRCC 1 cut(s) 695
BsrI ACTGG 1 cut(s) 187
BssECI CCNNGG 2 cut(s) 96, 575
BssMI GATC 6 cut(s) 133, 188, 220, 250, 308, 808
Bst2UI CCWGG 5 cut(s) 97, 351, 576, 630, 672
Bst4CI ACNGT 3 cut(s) 516, 552, 641
Bst6I CTCTTC 1 cut(s) 123
BstDEI CTNAG 3 cut(s) 519, 614, 783
BstF5I GGATG 2 cut(s) 421, 667
BstFNI CGCG 1 cut(s) 402
BstKTI GATC 6 cut(s) 136, 191, 223, 253, 311, 811
BstMAI GTCTC 3 cut(s) 95, 107, 522
BstMBI GATC 6 cut(s) 133, 188, 220, 250, 308, 808
BstMWI GCNNNNNNNGC 2 cut(s) 239, 322
BstNI CCWGG 5 cut(s) 97, 351, 576, 630, 672
BstNSI RCATGY 1 cut(s) 508
BstSCI CCNGG 6 cut(s) 95, 349, 574, 592, 628, 670
BstSFI CTRYAG 1 cut(s) 686
BstUI CGCG 1 cut(s) 402
BstV1I GCAGC 1 cut(s) 217
BstX2I RGATCY 2 cut(s) 220, 308
BstXI CCANNNNNNTGG 1 cut(s) 350
BstYI RGATCY 2 cut(s) 220, 308
BsuRI GGCC 2 cut(s) 90, 316
BtsCI GGATG 2 cut(s) 421, 667
BtsI GCAGTG 1 cut(s) 339
BtsIMutI CAGTG 2 cut(s) 180, 339
CaiI CAGNNNCTG 1 cut(s) 230
Cfr13I GGNCC 2 cut(s) 494, 533
Csp6I GTAC 4 cut(s) 469, 508, 553, 572
CviAII CATG 4 cut(s) 344, 505, 541, 680
CviQI GTAC 4 cut(s) 469, 508, 553, 572
DdeI CTNAG 3 cut(s) 519, 614, 783
DpnI GATC 6 cut(s) 135, 190, 222, 252, 310, 810
DpnII GATC 6 cut(s) 133, 188, 220, 250, 308, 808
DriI GACNNNNNGTC 1 cut(s) 120
Eam1104I CTCTTC 1 cut(s) 123
Eam1105I GACNNNNNGTC 1 cut(s) 120
EarI CTCTTC 1 cut(s) 123
Ecl136II GAGCTC 1 cut(s) 24
Eco147I AGGCCT 1 cut(s) 316
Eco24I GRGCYC 1 cut(s) 26
Eco32I GATATC 1 cut(s) 148
Eco47I GGWCC 2 cut(s) 494, 533
Eco53kI GAGCTC 1 cut(s) 24
Eco57I CTGAAG 2 cut(s) 542, 726
EcoICRI GAGCTC 1 cut(s) 24
EcoRI GAATTC 1 cut(s) 43
EcoRII CCWGG 5 cut(s) 95, 349, 574, 628, 670
EcoRV GATATC 1 cut(s) 148
EcoT38I GRGCYC 1 cut(s) 26
FaeI CATG 4 cut(s) 347, 508, 544, 683
FalI AAGNNNNNCTT 2 cut(s) 352, 384
FatI CATG 4 cut(s) 343, 504, 540, 679
FauI CCCGC 1 cut(s) 643
FauNDI CATATG 2 cut(s) 376, 490
FbaI TGATCA 1 cut(s) 808
Fnu4HI GCNGC 1 cut(s) 231
FokI GGATG 2 cut(s) 408, 654
FriOI GRGCYC 1 cut(s) 26
Fsp4HI GCNGC 1 cut(s) 231
FspBI CTAG 2 cut(s) 234, 312
GluI GCNGC 1 cut(s) 231
HaeIII GGCC 2 cut(s) 90, 316
HapII CCGG 1 cut(s) 593
Hin1II CATG 4 cut(s) 347, 508, 544, 683
HincII GTYRAC 2 cut(s) 548, 586
HindII GTYRAC 2 cut(s) 548, 586
HinfI GANTC 5 cut(s) 16, 103, 115, 394, 775
HpaI GTTAAC 1 cut(s) 586
HpaII CCGG 1 cut(s) 593
HphI GGTGA 5 cut(s) 68, 155, 422, 582, 696
Hpy166II GTNNAC 3 cut(s) 469, 548, 586
Hpy188I TCNGA 4 cut(s) 21, 218, 808, 813
Hpy188III TCNNGA 2 cut(s) 224, 772
Hpy8I GTNNAC 3 cut(s) 469, 548, 586
Hpy99I CGWCG 1 cut(s) 126
HpyAV CCTTC 4 cut(s) 378, 566, 744, 750
HpyCH4III ACNGT 3 cut(s) 516, 552, 641
HpyCH4IV ACGT 1 cut(s) 760
HpyCH4V TGCA 4 cut(s) 325, 332, 391, 409
HpyF10VI GCNNNNNNNGC 2 cut(s) 239, 322
HpyF3I CTNAG 3 cut(s) 519, 614, 783
HpySE526I ACGT 1 cut(s) 760
Hsp92II CATG 4 cut(s) 347, 508, 544, 683
Ksp22I TGATCA 1 cut(s) 808
KspAI GTTAAC 1 cut(s) 586
Kzo9I GATC 6 cut(s) 133, 188, 220, 250, 308, 808
LmnI GCTCC 2 cut(s) 352, 751
Lsp1109I GCAGC 1 cut(s) 217
MaeI CTAG 2 cut(s) 234, 312
MaeII ACGT 1 cut(s) 760
MaeIII GTNAC 3 cut(s) 56, 208, 481
MalI GATC 6 cut(s) 135, 190, 222, 252, 310, 810
MboI GATC 6 cut(s) 133, 188, 220, 250, 308, 808
MboII GAAGA 1 cut(s) 110
MflI RGATCY 2 cut(s) 220, 308
MhlI GDGCHC 2 cut(s) 26, 637
MluCI AATT 2 cut(s) 43, 283
MlyI GAGTC 4 cut(s) 97, 109, 403, 769
MmeI TCCRAC 3 cut(s) 278, 361, 773
MnlI CCTC 7 cut(s) 148, 220, 327, 375, 408, 789, 792
MseI TTAA 1 cut(s) 585
MslI CAYNNNNRTG 1 cut(s) 759
MspA1I CMGCKG 1 cut(s) 650
MspI CCGG 1 cut(s) 593
MspR9I CCNGG 6 cut(s) 97, 351, 576, 594, 630, 672
MvaI CCWGG 5 cut(s) 97, 351, 576, 630, 672
MvnI CGCG 1 cut(s) 402
MwoI GCNNNNNNNGC 2 cut(s) 239, 322
NciI CCSGG 1 cut(s) 594
NdeI CATATG 2 cut(s) 376, 490
NdeII GATC 6 cut(s) 133, 188, 220, 250, 308, 808
NlaIII CATG 4 cut(s) 347, 508, 544, 683
NlaIV GGNNCC 1 cut(s) 697
NmuCI GTSAC 2 cut(s) 56, 208
NspI RCATGY 1 cut(s) 508
OliI CACNNNNGTG 1 cut(s) 759
PceI AGGCCT 1 cut(s) 316
PciI ACATGT 1 cut(s) 504
PfeI GAWTC 1 cut(s) 16
PflMI CCANNNNNTGG 1 cut(s) 380
PfoI TCCNGGA 2 cut(s) 349, 670
PkrI GCNGC 1 cut(s) 232
PleI GAGTC 4 cut(s) 97, 109, 402, 769
PpsI GAGTC 4 cut(s) 97, 109, 402, 769
PscI ACATGT 1 cut(s) 504
PsiI TTATAA 1 cut(s) 447
Psp124BI GAGCTC 1 cut(s) 26
Psp6I CCWGG 5 cut(s) 95, 349, 574, 628, 670
PspGI CCWGG 5 cut(s) 95, 349, 574, 628, 670
PspN4I GGNNCC 1 cut(s) 697
PspPI GGNCC 2 cut(s) 494, 533
PstNI CAGNNNCTG 1 cut(s) 230
PsuI RGATCY 2 cut(s) 220, 308
RsaI GTAC 4 cut(s) 470, 509, 554, 573
RsaNI GTAC 4 cut(s) 469, 508, 553, 572
RseI CAYNNNNRTG 1 cut(s) 759
SacI GAGCTC 1 cut(s) 26
SaqAI TTAA 1 cut(s) 585
SatI GCNGC 1 cut(s) 231
Sau3AI GATC 6 cut(s) 133, 188, 220, 250, 308, 808
Sau96I GGNCC 2 cut(s) 494, 533
SchI GAGTC 4 cut(s) 97, 109, 403, 769
ScrFI CCNGG 6 cut(s) 97, 351, 576, 594, 630, 672
SduI GDGCHC 2 cut(s) 26, 637
SfcI CTRYAG 1 cut(s) 686
SinI GGWCC 2 cut(s) 494, 533
SmiMI CAYNNNNRTG 1 cut(s) 759
SmlI CTYRAG 1 cut(s) 152
SmoI CTYRAG 1 cut(s) 152
Sse9I AATT 2 cut(s) 43, 283
SseBI AGGCCT 1 cut(s) 316
SsiI CCGC 3 cut(s) 402, 650, 801
SspMI CTAG 2 cut(s) 234, 312
SstI GAGCTC 1 cut(s) 26
StuI AGGCCT 1 cut(s) 316
StyD4I CCNGG 6 cut(s) 95, 349, 574, 592, 628, 670
TaaI ACNGT 3 cut(s) 516, 552, 641
TaiI ACGT 1 cut(s) 763
TaqI TCGA 4 cut(s) 14, 132, 187, 249
TasI AATT 2 cut(s) 43, 283
TatI WGTACW 1 cut(s) 507
TfiI GAWTC 1 cut(s) 16
Tru1I TTAA 1 cut(s) 585
Tru9I TTAA 1 cut(s) 585
TscAI CASTG 2 cut(s) 187, 339
TseFI GTSAC 2 cut(s) 56, 208
TseI GCWGC 1 cut(s) 230
Tsp45I GTSAC 2 cut(s) 56, 208
TspDTI ATGAA 1 cut(s) 23
TspGWI ACGGA 1 cut(s) 414
TspRI CASTG 2 cut(s) 187, 339
Van91I CCANNNNNTGG 1 cut(s) 380
VpaK11BI GGWCC 2 cut(s) 494, 533
XapI RAATTY 1 cut(s) 43
XceI RCATGY 1 cut(s) 508
XcmI CCANNNNNNNNNTGG 1 cut(s) 626
XspI CTAG 2 cut(s) 234, 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.