Rmu_sc0003814.1_g000014

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003814.1
OG0001423
Physical Location & Seq
Forward (+)
47059 .. 50972
3914 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003814.1_g000014.1.cds

Sequence Viewer

Length: 840 bp
atggcgtaccagccgcttccgggccggaactccgtttccagctccagctccggcgcttccggattccacttcatcaactcgcccttcggcgacaccacttacaccaagctcttcgtcggcggcctcgcctgggaaacgcagagcgagaccatgggacgctatttcgagcaattcggccagattcttgaggccgttgttattactgataagaacaccggccgatccaagggctatggttttgtcactttccaggagccggaggctgctgccagggcatgtgctgatccaactccagttattgatggccgccgcgctaattgtaatctggcttcactccggcgccctcggccgcatatgagttatgtacgtacagcaccggcttctccatacattggaagcatgcaagctcctcgtggggcttatgtcggagcatatggctaccagcagcctcttacgtacaattatccacaagggatgatgtttcctccttatgggtatgcaacttacgggccggaatacgtttattcacagggtgctcacaattcttatgcgggtcagcagtatcttcagatatatggagttccagggacggttaatactctgtattcctatgcacaactgggtcaaaccattccaggtggtcagggttatccaacagtacacagatatgcaatgcctactcagcagataatcccatttggacccagtgttaatgcagtaacaactacaccagtccctacaattcaagcaccatattccacaggtaaactttcctttatcgcttttaatcaggtaccctttgactgcagcaggactaagagcagcagaactgctacttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000381 GO:0001501 GO:0001756 GO:0001947 GO:0002009 GO:0003002 GO:0003007 GO:0003143 GO:0003228 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006417 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0007368 GO:0007389 GO:0007507 GO:0007517 GO:0007519 GO:0008150 GO:0008152 GO:0009653 GO:0009790 GO:0009792 GO:0009799 GO:0009855 GO:0009887 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009896 GO:0009952 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010638 GO:0010720 GO:0010830 GO:0010831 GO:0014706 GO:0016070 GO:0016071 GO:0016202 GO:0017091 GO:0017148 GO:0019219 GO:0019222 GO:0022603 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031330 GO:0031331 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032956 GO:0032970 GO:0033043 GO:0033554 GO:0034248 GO:0034249 GO:0034641 GO:0035050 GO:0035239 GO:0035282 GO:0035295 GO:0035925 GO:0036002 GO:0043009 GO:0043170 GO:0043484 GO:0043487 GO:0043488 GO:0043489 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0045595 GO:0045597 GO:0045661 GO:0045663 GO:0045844 GO:0045934 GO:0045935 GO:0046483 GO:0048024 GO:0048255 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048562 GO:0048568 GO:0048598 GO:0048634 GO:0048636 GO:0048641 GO:0048643 GO:0048646 GO:0048701 GO:0048702 GO:0048704 GO:0048705 GO:0048706 GO:0048729 GO:0048731 GO:0048856 GO:0050684 GO:0050779 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051147 GO:0051149 GO:0051153 GO:0051155 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051493 GO:0051495 GO:0051716 GO:0060255 GO:0060284 GO:0060297 GO:0060298 GO:0060429 GO:0060537 GO:0060538 GO:0060562 GO:0061013 GO:0061014 GO:0061053 GO:0061061 GO:0061157 GO:0061158 GO:0061371 GO:0065007 GO:0065008 GO:0071704 GO:0072358 GO:0072359 GO:0080090 GO:0090304 GO:0097157 GO:0097159 GO:0110020 GO:1901360 GO:1901363 GO:1901861 GO:1901863 GO:1902115 GO:1902117 GO:1902369 GO:1902373 GO:1902809 GO:1902811 GO:1902903 GO:1902905 GO:1903311 GO:1903312 GO:1903313 GO:1904888 GO:1905868 GO:1905870 GO:1990715 GO:1990825 GO:2000026 GO:2000112 GO:2000113 GO:2000736 GO:2000738 GO:2000765 GO:2000766 GO:2001014 GO:2001016
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

279

Amino Acids

30.38

Weight (kDa)

9.22

Isoelectric Point (pI)

47.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 793
AccB1I GGYRCC 2 cut(s) 339, 793
AccB7I CCANNNNNTGG 1 cut(s) 392
AccII CGCG 1 cut(s) 312
AccIII TCCGGA 1 cut(s) 59
AciI CCGC 6 cut(s) 14, 120, 307, 310, 350, 551
AclWI GGATC 2 cut(s) 216, 278
AcoI YGGCCR 4 cut(s) 175, 217, 304, 347
AcuI CTGAAG 1 cut(s) 551
AcyI GRCGYC 1 cut(s) 340
AdeI CACNNNGTG 1 cut(s) 533
AfaI GTAC 6 cut(s) 8, 366, 370, 458, 660, 795
AfiI CCNNNNNNNGG 6 cut(s) 20, 130, 226, 256, 392, 491
AgsI TTSAA 1 cut(s) 746
AjnI CCWGG 5 cut(s) 128, 249, 269, 583, 634
AloI GAACNNNNNNTCC 2 cut(s) 20, 52
AluBI AGCT 4 cut(s) 42, 48, 109, 407
AluI AGCT 4 cut(s) 42, 48, 109, 407
Alw21I GWGCWC 1 cut(s) 538
Alw26I GTCTC 1 cut(s) 140
AlwI GGATC 2 cut(s) 216, 278
Aor13HI TCCGGA 1 cut(s) 59
AoxI GGCC 8 cut(s) 22, 121, 175, 189, 217, 304, 347, 509
ApeKI GCWGC 5 cut(s) 263, 266, 445, 807, 822
Asp718I GGTACC 1 cut(s) 793
AspLEI GCGC 3 cut(s) 56, 314, 342
AspS9I GGNCC 3 cut(s) 22, 509, 701
AsuC2I CCSGG 1 cut(s) 21
AvaII GGWCC 1 cut(s) 701
BanI GGYRCC 2 cut(s) 339, 793
BarI GAAGNNNNNNTAC 2 cut(s) 313, 345
BauI CACGAG 1 cut(s) 411
Bbv12I GWGCWC 1 cut(s) 538
BbvI GCAGC 5 cut(s) 250, 253, 457, 819, 834
BccI CCATC 1 cut(s) 296
BceAI ACGGC 1 cut(s) 176
BcgI CGANNNNNNTGC 2 cut(s) 392, 426
BciT130I CCWGG 5 cut(s) 130, 251, 271, 585, 636
BcnI CCSGG 1 cut(s) 21
BcoDI GTCTC 1 cut(s) 140
BfmI CTRYAG 1 cut(s) 805
BfoI RGCGCY 2 cut(s) 57, 343
Bme1390I CCNGG 6 cut(s) 21, 130, 251, 271, 585, 636
Bme18I GGWCC 1 cut(s) 701
BmgT120I GGNCC 3 cut(s) 22, 509, 701
BmiI GGNNCC 4 cut(s) 255, 341, 703, 795
BmrFI CCNGG 6 cut(s) 21, 130, 251, 271, 585, 636
BmrI ACTGGG 2 cut(s) 629, 699
BmuI ACTGGG 2 cut(s) 629, 699
BpmI CTGGAG 2 cut(s) 28, 276
BpuEI CTTGAG 1 cut(s) 206
BpuMI CCSGG 1 cut(s) 21
BsaAI YACGTR 2 cut(s) 368, 456
BsaHI GRCGYC 1 cut(s) 340
BsaI GGTCTC 1 cut(s) 140
BsaJI CCNNGG 6 cut(s) 129, 150, 225, 270, 344, 584
BsaWI WCCGGW 1 cut(s) 59
Bsc4I CCNNNNNNNGG 6 cut(s) 20, 130, 226, 256, 392, 491
Bse118I RCCGGY 2 cut(s) 215, 376
Bse1I ACTGG 4 cut(s) 293, 624, 705, 731
Bse3DI GCAATG 1 cut(s) 678
BseAI TCCGGA 1 cut(s) 59
BseBI CCWGG 5 cut(s) 130, 251, 271, 585, 636
BseDI CCNNGG 6 cut(s) 129, 150, 225, 270, 344, 584
BseGI GGATG 1 cut(s) 480
BseLI CCNNNNNNNGG 6 cut(s) 20, 130, 226, 256, 392, 491
BseMI GCAATG 1 cut(s) 678
BseMII CTCAG 1 cut(s) 695
BseNI ACTGG 4 cut(s) 293, 624, 705, 731
BseRI GAGGAG 1 cut(s) 399
BseX3I CGGCCG 2 cut(s) 217, 347
BseXI GCAGC 5 cut(s) 250, 253, 457, 819, 834
Bsh1236I CGCG 1 cut(s) 312
Bsh1285I CGRYCG 2 cut(s) 220, 350
BshFI GGCC 8 cut(s) 24, 123, 177, 191, 219, 306, 349, 511
BshNI GGYRCC 2 cut(s) 339, 793
BsiEI CGRYCG 2 cut(s) 220, 350
BsiHKAI GWGCWC 1 cut(s) 538
BsiSI CCGG 9 cut(s) 20, 25, 51, 60, 216, 257, 337, 377, 512
BslFI GGGAC 3 cut(s) 168, 601, 719
BslI CCNNNNNNNGG 6 cut(s) 20, 130, 226, 256, 392, 491
BsmAI GTCTC 1 cut(s) 140
BsmFI GGGAC 3 cut(s) 168, 601, 719
BsnI GGCC 8 cut(s) 24, 123, 177, 191, 219, 306, 349, 511
Bso31I GGTCTC 1 cut(s) 140
Bsp1286I GDGCHC 1 cut(s) 538
Bsp13I TCCGGA 1 cut(s) 59
Bsp143I GATC 2 cut(s) 221, 283
Bsp19I CCATGG 1 cut(s) 150
BspACI CCGC 6 cut(s) 14, 120, 307, 310, 350, 551
BspANI GGCC 8 cut(s) 24, 123, 177, 191, 219, 306, 349, 511
BspCNI CTCAG 1 cut(s) 694
BspEI TCCGGA 1 cut(s) 59
BspFNI CGCG 1 cut(s) 312
BspLI GGNNCC 4 cut(s) 255, 341, 703, 795
BspMAI CTGCAG 1 cut(s) 809
BspPI GGATC 2 cut(s) 216, 278
BspQI GCTCTTC 1 cut(s) 116
BspT107I GGYRCC 2 cut(s) 339, 793
BspTNI GGTCTC 1 cut(s) 140
BsrDI GCAATG 1 cut(s) 678
BsrFI RCCGGY 2 cut(s) 215, 376
BsrI ACTGG 4 cut(s) 293, 624, 705, 731
BssAI RCCGGY 2 cut(s) 215, 376
BssECI CCNNGG 6 cut(s) 129, 150, 225, 270, 344, 584
BssMI GATC 2 cut(s) 221, 283
BssNI GRCGYC 1 cut(s) 340
BssSI CACGAG 1 cut(s) 411
BssT1I CCWWGG 2 cut(s) 150, 225
Bst2BI CACGAG 1 cut(s) 411
Bst2UI CCWGG 5 cut(s) 130, 251, 271, 585, 636
Bst4CI ACNGT 2 cut(s) 592, 658
Bst6I CTCTTC 1 cut(s) 116
BstACI GRCGYC 1 cut(s) 340
BstBAI YACGTR 2 cut(s) 368, 456
BstC8I GCNNGC 2 cut(s) 401, 405
BstDEI CTNAG 3 cut(s) 681, 816, 837
BstDSI CCRYGG 1 cut(s) 150
BstF5I GGATG 1 cut(s) 480
BstFNI CGCG 1 cut(s) 312
BstH2I RGCGCY 2 cut(s) 57, 343
BstHHI GCGC 3 cut(s) 56, 314, 342
BstKTI GATC 2 cut(s) 224, 286
BstMAI GTCTC 1 cut(s) 140
BstMBI GATC 2 cut(s) 221, 283
BstMCI CGRYCG 2 cut(s) 220, 350
BstMWI GCNNNNNNNGC 3 cut(s) 272, 346, 682
BstNI CCWGG 5 cut(s) 130, 251, 271, 585, 636
BstNSI RCATGY 2 cut(s) 279, 403
BstSCI CCNGG 6 cut(s) 19, 128, 249, 269, 583, 634
BstSFI CTRYAG 1 cut(s) 805
BstSNI TACGTA 2 cut(s) 368, 456
BstUI CGCG 1 cut(s) 312
BstV1I GCAGC 5 cut(s) 250, 253, 457, 819, 834
BstZI CGGCCG 2 cut(s) 217, 347
BsuRI GGCC 8 cut(s) 24, 123, 177, 191, 219, 306, 349, 511
BtgI CCRYGG 1 cut(s) 150
BtsCI GGATG 1 cut(s) 480
BtsIMutI CAGTG 1 cut(s) 712
Cac8I GCNNGC 2 cut(s) 401, 405
CfoI GCGC 3 cut(s) 56, 314, 342
Cfr10I RCCGGY 2 cut(s) 215, 376
Cfr13I GGNCC 3 cut(s) 22, 509, 701
CseI GACGC 1 cut(s) 165
Csp6I GTAC 6 cut(s) 7, 365, 369, 457, 659, 794
CviAII CATG 3 cut(s) 151, 276, 400
CviQI GTAC 6 cut(s) 7, 365, 369, 457, 659, 794
DdeI CTNAG 3 cut(s) 681, 816, 837
DinI GGCGCC 1 cut(s) 341
DpnI GATC 2 cut(s) 223, 285
DpnII GATC 2 cut(s) 221, 283
DraIII CACNNNGTG 1 cut(s) 533
EaeI YGGCCR 4 cut(s) 175, 217, 304, 347
EagI CGGCCG 2 cut(s) 217, 347
Eam1104I CTCTTC 1 cut(s) 116
EarI CTCTTC 1 cut(s) 116
EclXI CGGCCG 2 cut(s) 217, 347
Eco105I TACGTA 2 cut(s) 368, 456
Eco130I CCWWGG 2 cut(s) 150, 225
Eco31I GGTCTC 1 cut(s) 140
Eco47I GGWCC 1 cut(s) 701
Eco52I CGGCCG 2 cut(s) 217, 347
Eco57I CTGAAG 1 cut(s) 551
EcoRII CCWGG 5 cut(s) 128, 249, 269, 583, 634
EcoT14I CCWWGG 2 cut(s) 150, 225
EgeI GGCGCC 1 cut(s) 341
EheI GGCGCC 1 cut(s) 341
ErhI CCWWGG 2 cut(s) 150, 225
FaeI CATG 3 cut(s) 154, 279, 403
FaqI GGGAC 3 cut(s) 168, 601, 719
FatI CATG 3 cut(s) 150, 275, 399
FauI CCCGC 1 cut(s) 544
FauNDI CATATG 2 cut(s) 354, 433
FokI GGATG 1 cut(s) 487
GlaI GCGC 3 cut(s) 55, 313, 341
GsuI CTGGAG 2 cut(s) 28, 276
HaeII RGCGCY 2 cut(s) 57, 343
HaeIII GGCC 8 cut(s) 24, 123, 177, 191, 219, 306, 349, 511
HapII CCGG 9 cut(s) 20, 25, 51, 60, 216, 257, 337, 377, 512
HgaI GACGC 1 cut(s) 165
HhaI GCGC 3 cut(s) 56, 314, 342
Hin1I GRCGYC 1 cut(s) 340
Hin1II CATG 3 cut(s) 154, 279, 403
Hin6I GCGC 3 cut(s) 54, 312, 340
HinP1I GCGC 3 cut(s) 54, 312, 340
HinfI GANTC 2 cut(s) 63, 181
HpaII CCGG 9 cut(s) 20, 25, 51, 60, 216, 257, 337, 377, 512
Hpy166II GTNNAC 2 cut(s) 661, 767
Hpy188I TCNGA 2 cut(s) 428, 570
Hpy188III TCNNGA 2 cut(s) 60, 185
Hpy8I GTNNAC 2 cut(s) 661, 767
Hpy99I CGWCG 1 cut(s) 119
HpyAV CCTTC 1 cut(s) 94
HpyCH4III ACNGT 2 cut(s) 592, 658
HpyCH4IV ACGT 3 cut(s) 367, 455, 519
HpyCH4V TGCA 6 cut(s) 403, 500, 614, 671, 716, 807
HpyF10VI GCNNNNNNNGC 3 cut(s) 272, 346, 682
HpyF3I CTNAG 3 cut(s) 681, 816, 837
HpySE526I ACGT 3 cut(s) 367, 455, 519
Hsp92I GRCGYC 1 cut(s) 340
Hsp92II CATG 3 cut(s) 154, 279, 403
HspAI GCGC 3 cut(s) 54, 312, 340
KasI GGCGCC 1 cut(s) 339
Kpn2I TCCGGA 1 cut(s) 59
KpnI GGTACC 1 cut(s) 797
Kzo9I GATC 2 cut(s) 221, 283
LguI GCTCTTC 1 cut(s) 116
LmnI GCTCC 5 cut(s) 47, 53, 253, 412, 428
Lsp1109I GCAGC 5 cut(s) 250, 253, 457, 819, 834
MaeII ACGT 3 cut(s) 367, 455, 519
MaeIII GTNAC 2 cut(s) 241, 718
MalI GATC 2 cut(s) 223, 285
MboI GATC 2 cut(s) 221, 283
MboII GAAGA 2 cut(s) 103, 557
MhlI GDGCHC 1 cut(s) 538
MluCI AATT 5 cut(s) 170, 316, 460, 541, 741
Mly113I GGCGCC 1 cut(s) 340
MmeI TCCRAC 3 cut(s) 311, 406, 677
MnlI CCTC 7 cut(s) 134, 181, 253, 354, 420, 459, 495
MroI TCCGGA 1 cut(s) 59
MseI TTAA 3 cut(s) 594, 711, 786
MslI CAYNNNNRTG 1 cut(s) 666
MspI CCGG 9 cut(s) 20, 25, 51, 60, 216, 257, 337, 377, 512
MspR9I CCNGG 6 cut(s) 21, 130, 251, 271, 585, 636
MvaI CCWGG 5 cut(s) 130, 251, 271, 585, 636
MvnI CGCG 1 cut(s) 312
MwoI GCNNNNNNNGC 3 cut(s) 272, 346, 682
NarI GGCGCC 1 cut(s) 340
NciI CCSGG 1 cut(s) 21
NcoI CCATGG 1 cut(s) 150
NdeI CATATG 2 cut(s) 354, 433
NdeII GATC 2 cut(s) 221, 283
NlaIII CATG 3 cut(s) 154, 279, 403
NlaIV GGNNCC 4 cut(s) 255, 341, 703, 795
NmeAIII GCCGAG 1 cut(s) 325
NmuCI GTSAC 1 cut(s) 241
NspI RCATGY 2 cut(s) 279, 403
PaeI GCATGC 1 cut(s) 403
PciSI GCTCTTC 1 cut(s) 116
PfeI GAWTC 2 cut(s) 63, 181
PflMI CCANNNNNTGG 1 cut(s) 392
PfoI TCCNGGA 1 cut(s) 249
PluTI GGCGCC 1 cut(s) 343
Ppu21I YACGTR 2 cut(s) 368, 456
Psp6I CCWGG 5 cut(s) 128, 249, 269, 583, 634
PspGI CCWGG 5 cut(s) 128, 249, 269, 583, 634
PspN4I GGNNCC 4 cut(s) 255, 341, 703, 795
PspPI GGNCC 3 cut(s) 22, 509, 701
PstI CTGCAG 1 cut(s) 809
RsaI GTAC 6 cut(s) 8, 366, 370, 458, 660, 795
RsaNI GTAC 6 cut(s) 7, 365, 369, 457, 659, 794
RseI CAYNNNNRTG 1 cut(s) 666
SapI GCTCTTC 1 cut(s) 116
SaqAI TTAA 3 cut(s) 594, 711, 786
Sau3AI GATC 2 cut(s) 221, 283
Sau96I GGNCC 3 cut(s) 22, 509, 701
ScrFI CCNGG 6 cut(s) 21, 130, 251, 271, 585, 636
SduI GDGCHC 1 cut(s) 538
SfcI CTRYAG 1 cut(s) 805
SfoI GGCGCC 1 cut(s) 341
SinI GGWCC 1 cut(s) 701
SmiMI CAYNNNNRTG 1 cut(s) 666
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
SnaBI TACGTA 2 cut(s) 368, 456
SphI GCATGC 1 cut(s) 403
Sse9I AATT 5 cut(s) 170, 316, 460, 541, 741
SsiI CCGC 6 cut(s) 14, 120, 307, 310, 350, 551
SspDI GGCGCC 1 cut(s) 339
StyD4I CCNGG 6 cut(s) 19, 128, 249, 269, 583, 634
StyI CCWWGG 2 cut(s) 150, 225
TaaI ACNGT 2 cut(s) 592, 658
TaiI ACGT 3 cut(s) 370, 458, 522
TaqI TCGA 1 cut(s) 165
TasI AATT 5 cut(s) 170, 316, 460, 541, 741
TatI WGTACW 1 cut(s) 658
TauI GCSGC 5 cut(s) 16, 123, 309, 312, 352
TfiI GAWTC 2 cut(s) 63, 181
Tru1I TTAA 3 cut(s) 594, 711, 786
Tru9I TTAA 3 cut(s) 594, 711, 786
TscAI CASTG 1 cut(s) 712
TseFI GTSAC 1 cut(s) 241
TseI GCWGC 5 cut(s) 263, 266, 445, 807, 822
Tsp45I GTSAC 1 cut(s) 241
TspDTI ATGAA 1 cut(s) 61
TspGWI ACGGA 1 cut(s) 22
TspRI CASTG 1 cut(s) 712
Van91I CCANNNNNTGG 1 cut(s) 392
VpaK11BI GGWCC 1 cut(s) 701
XceI RCATGY 2 cut(s) 279, 403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.