Rmu_ssc0000215.1_g000032

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000215.1
OG0001423
Physical Location & Seq
Reverse (-)
132853 .. 135752
2900 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000215.1_g000032.1.cds

Sequence Viewer

Length: 927 bp
atggcttacccacaacaacaacagaatcaacaacaacagcagctgttcaattcgccgttcggggacacgaccttgacgaaggtcttcgtcggagggctggcctgggagacccagagcgagacgctccgccgccacttcgagcagtacggcgatatactcgaggccgtcgtcatcaccgataagaacaccgcccgatccaaaggctatggctttgtcacatttcgtgatcccgactctgcaagaagggcctgtgcggaccccaatcctgttattgatggccgcagggctaactgtaatcttgcctctctaggccgccctcgcccatcattccatttccccgggcaactgagatcaccagcgccaatcctcggtcgtctgcaagctccaagagctgcttacgtggggagtcctggttatcaccaccctctttctcatgcttatcagcccgggtttgtttacccttcttatgggtacacagcatatggacctgaatatgtctacccacagcagggtgtctatagtccgtacatgaatcagcaataccttcagatgtatggtgtaccggggacagtcaaccctggtgtatatccttatggacaagcgggtcattctctttccggaaatcctgcgtatacggcggttcaaagctatggaattccaggccatcatataatgcaattcactgggtccaacgtcagtggagcatcaccagttgcccttcccacaattcaaacaccatatcctgcaggtatagctgcaccagctccaggacaggcacaacttttacttcctactaattctcctcaattcaccagcagttctaaatctagccttgcaagttattatctttgctttctagaggtcattcatgatggtcatcagagataccgcaaagtcagtcagctattagatgtcgagtcattctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

308

Amino Acids

33.79

Weight (kDa)

8.83

Isoelectric Point (pI)

55.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 603
Acc36I ACCTGC 1 cut(s) 737
AccI GTMKAC 2 cut(s) 498, 632
AccIII TCCGGA 1 cut(s) 617
AciI CCGC 9 cut(s) 127, 130, 189, 254, 280, 313, 602, 638, 889
AclWI GGATC 2 cut(s) 189, 221
AcoI YGGCCR 1 cut(s) 277
AcsI RAATTY 1 cut(s) 654
AcuI CTGAAG 1 cut(s) 530
AfaI GTAC 4 cut(s) 146, 473, 527, 561
AfiI CCNNNNNNNGG 5 cut(s) 368, 467, 508, 509, 767
AgsI TTSAA 3 cut(s) 49, 644, 731
AjnI CCWGG 5 cut(s) 101, 409, 577, 658, 766
AluBI AGCT 7 cut(s) 43, 383, 392, 648, 755, 764, 904
AluI AGCT 7 cut(s) 43, 383, 392, 648, 755, 764, 904
Alw26I GTCTC 2 cut(s) 101, 113
AlwI GGATC 2 cut(s) 189, 221
AlwNI CAGNNNCTG 1 cut(s) 43
Ama87I CYCGRG 3 cut(s) 158, 338, 446
Aor13HI TCCGGA 1 cut(s) 617
AoxI GGCC 6 cut(s) 99, 162, 246, 277, 310, 661
ApeKI GCWGC 3 cut(s) 40, 392, 755
ApoI RAATTY 1 cut(s) 654
Asp700I GAANNNNTTC 1 cut(s) 83
AspLEI GCGC 1 cut(s) 361
AspS9I GGNCC 4 cut(s) 246, 256, 485, 687
AsuC2I CCSGG 5 cut(s) 339, 340, 447, 448, 564
AsuHPI GGTGA 5 cut(s) 166, 345, 410, 699, 802
AvaI CYCGRG 3 cut(s) 158, 338, 446
AvaII GGWCC 3 cut(s) 256, 485, 687
BbsI GAAGAC 1 cut(s) 76
BbvI GCAGC 3 cut(s) 52, 379, 742
BccI CCATC 4 cut(s) 269, 331, 672, 866
BceAI ACGGC 4 cut(s) 40, 149, 163, 651
BciT130I CCWGG 5 cut(s) 103, 411, 579, 660, 768
BcnI CCSGG 5 cut(s) 339, 340, 447, 448, 564
BcoDI GTCTC 2 cut(s) 101, 113
BfaI CTAG 3 cut(s) 308, 828, 857
BfmI CTRYAG 2 cut(s) 517, 744
BfoI RGCGCY 1 cut(s) 362
BfuAI ACCTGC 1 cut(s) 737
BisI GCNGC 6 cut(s) 41, 130, 280, 313, 393, 756
BlsI GCNGC 6 cut(s) 42, 131, 281, 314, 394, 757
Bme18I GGWCC 3 cut(s) 256, 485, 687
BmeT110I CYCGRG 3 cut(s) 158, 338, 446
BmgT120I GGNCC 4 cut(s) 246, 256, 485, 687
BmiI GGNNCC 2 cut(s) 258, 688
BmrI ACTGGG 1 cut(s) 693
BmsI GCATC 1 cut(s) 713
BmuI ACTGGG 1 cut(s) 693
BoxI GACNNNNGTC 1 cut(s) 80
BpiI GAAGAC 1 cut(s) 76
BpmI CTGGAG 1 cut(s) 750
BpuMI CCSGG 5 cut(s) 339, 340, 447, 448, 564
BsaAI YACGTR 1 cut(s) 400
BsaBI GATNNNNATC 1 cut(s) 876
BsaI GGTCTC 1 cut(s) 101
BsaJI CCNNGG 7 cut(s) 102, 337, 338, 367, 446, 563, 577
BsaWI WCCGGW 1 cut(s) 617
BsaXI ACNNNNNCTCC 4 cut(s) 397, 427, 784, 814
Bsc4I CCNNNNNNNGG 5 cut(s) 368, 467, 508, 509, 767
Bse1I ACTGG 2 cut(s) 688, 710
Bse8I GATNNNNATC 1 cut(s) 876
BseAI TCCGGA 1 cut(s) 617
BseBI CCWGG 5 cut(s) 103, 411, 579, 660, 768
BseDI CCNNGG 7 cut(s) 102, 337, 338, 367, 446, 563, 577
BseJI GATNNNNATC 1 cut(s) 876
BseLI CCNNNNNNNGG 5 cut(s) 368, 467, 508, 509, 767
BseMII CTCAG 1 cut(s) 338
BseNI ACTGG 2 cut(s) 688, 710
BseRI GAGGAG 1 cut(s) 792
BseXI GCAGC 3 cut(s) 52, 379, 742
BsgI GTGCAG 1 cut(s) 741
Bsh1285I CGRYCG 1 cut(s) 373
BshFI GGCC 6 cut(s) 101, 164, 248, 279, 312, 663
BsiEI CGRYCG 1 cut(s) 373
BsiHKCI CYCGRG 3 cut(s) 158, 338, 446
BsiSI CCGG 4 cut(s) 339, 447, 563, 618
BslFI GGGAC 2 cut(s) 77, 580
BslI CCNNNNNNNGG 5 cut(s) 368, 467, 508, 509, 767
BsmAI GTCTC 2 cut(s) 101, 113
BsmBI CGTCTC 1 cut(s) 113
BsmFI GGGAC 2 cut(s) 77, 580
BsnI GGCC 6 cut(s) 101, 164, 248, 279, 312, 663
Bso31I GGTCTC 1 cut(s) 101
BsoBI CYCGRG 3 cut(s) 158, 338, 446
Bsp13I TCCGGA 1 cut(s) 617
Bsp143I GATC 3 cut(s) 194, 226, 350
BspACI CCGC 9 cut(s) 127, 130, 189, 254, 280, 313, 602, 638, 889
BspANI GGCC 6 cut(s) 101, 164, 248, 279, 312, 663
BspCNI CTCAG 1 cut(s) 339
BspEI TCCGGA 1 cut(s) 617
BspHI TCATGA 1 cut(s) 868
BspLI GGNNCC 2 cut(s) 258, 688
BspMAI CTGCAG 1 cut(s) 748
BspMI ACCTGC 1 cut(s) 737
BspPI GGATC 2 cut(s) 189, 221
BspTNI GGTCTC 1 cut(s) 101
BsrI ACTGG 2 cut(s) 688, 710
BssECI CCNNGG 7 cut(s) 102, 337, 338, 367, 446, 563, 577
BssMI GATC 3 cut(s) 194, 226, 350
BssNAI GTATAC 1 cut(s) 633
Bst1107I GTATAC 1 cut(s) 633
Bst2UI CCWGG 5 cut(s) 103, 411, 579, 660, 768
Bst4CI ACNGT 2 cut(s) 293, 571
BstBAI YACGTR 1 cut(s) 400
BstC8I GCNNGC 2 cut(s) 99, 381
BstDEI CTNAG 1 cut(s) 347
BstH2I RGCGCY 1 cut(s) 362
BstHHI GCGC 1 cut(s) 361
BstKTI GATC 3 cut(s) 197, 229, 353
BstMAI GTCTC 2 cut(s) 101, 113
BstMBI GATC 3 cut(s) 194, 226, 350
BstMCI CGRYCG 1 cut(s) 373
BstMWI GCNNNNNNNGC 6 cut(s) 245, 318, 389, 635, 752, 761
BstNI CCWGG 5 cut(s) 103, 411, 579, 660, 768
BstPAI GACNNNNGTC 1 cut(s) 80
BstSFI CTRYAG 2 cut(s) 517, 744
BstV1I GCAGC 3 cut(s) 52, 379, 742
BstV2I GAAGAC 1 cut(s) 76
BstZ17I GTATAC 1 cut(s) 633
BsuRI GGCC 6 cut(s) 101, 164, 248, 279, 312, 663
BtsIMutI CAGTG 2 cut(s) 681, 703
BveI ACCTGC 1 cut(s) 737
Cac8I GCNNGC 2 cut(s) 99, 381
CaiI CAGNNNCTG 1 cut(s) 43
CciI TCATGA 1 cut(s) 868
CfoI GCGC 1 cut(s) 361
Cfr13I GGNCC 4 cut(s) 246, 256, 485, 687
Cfr9I CCCGGG 2 cut(s) 338, 446
CseI GACGC 1 cut(s) 130
Csp6I GTAC 4 cut(s) 145, 472, 526, 560
CspCI CAANNNNNGTGG 2 cut(s) 679, 714
CviAII CATG 3 cut(s) 434, 529, 869
CviQI GTAC 4 cut(s) 145, 472, 526, 560
DdeI CTNAG 1 cut(s) 347
DpnI GATC 3 cut(s) 196, 228, 352
DpnII GATC 3 cut(s) 194, 226, 350
DrdI GACNNNNNNGTC 1 cut(s) 603
DseDI GACNNNNNNGTC 1 cut(s) 603
EaeI YGGCCR 1 cut(s) 277
EciI GGCGGA 1 cut(s) 116
Eco31I GGTCTC 1 cut(s) 101
Eco47I GGWCC 3 cut(s) 256, 485, 687
Eco57I CTGAAG 1 cut(s) 530
Eco88I CYCGRG 3 cut(s) 158, 338, 446
EcoO109I RGGNCCY 1 cut(s) 246
EcoRI GAATTC 1 cut(s) 654
EcoRII CCWGG 5 cut(s) 101, 409, 577, 658, 766
Esp3I CGTCTC 1 cut(s) 113
FaeI CATG 3 cut(s) 437, 532, 872
FalI AAGNNNNNCTT 2 cut(s) 379, 411
FaqI GGGAC 2 cut(s) 77, 580
FatI CATG 3 cut(s) 433, 528, 868
FauI CCCGC 1 cut(s) 595
FauNDI CATATG 1 cut(s) 481
FblI GTMKAC 2 cut(s) 498, 632
Fnu4HI GCNGC 6 cut(s) 41, 130, 280, 313, 393, 756
Fsp4HI GCNGC 6 cut(s) 41, 130, 280, 313, 393, 756
FspBI CTAG 3 cut(s) 308, 828, 857
GlaI GCGC 1 cut(s) 360
GluI GCNGC 6 cut(s) 41, 130, 280, 313, 393, 756
GsuI CTGGAG 1 cut(s) 750
HaeII RGCGCY 1 cut(s) 362
HaeIII GGCC 6 cut(s) 101, 164, 248, 279, 312, 663
HapII CCGG 4 cut(s) 339, 447, 563, 618
HgaI GACGC 1 cut(s) 130
HhaI GCGC 1 cut(s) 361
Hin1II CATG 3 cut(s) 437, 532, 872
Hin6I GCGC 1 cut(s) 359
HinP1I GCGC 1 cut(s) 359
HincII GTYRAC 1 cut(s) 574
HindII GTYRAC 1 cut(s) 574
HinfI GANTC 5 cut(s) 25, 233, 406, 532, 917
HpaII CCGG 4 cut(s) 339, 447, 563, 618
HphI GGTGA 5 cut(s) 166, 345, 410, 699, 802
Hpy166II GTNNAC 6 cut(s) 457, 474, 499, 560, 574, 633
Hpy188I TCNGA 4 cut(s) 92, 549, 882, 926
Hpy188III TCNNGA 5 cut(s) 224, 230, 618, 857, 869
Hpy8I GTNNAC 6 cut(s) 457, 474, 499, 560, 574, 633
Hpy99I CGWCG 2 cut(s) 92, 170
HpyAV CCTTC 5 cut(s) 73, 237, 471, 554, 728
HpyCH4III ACNGT 2 cut(s) 293, 571
HpyCH4IV ACGT 2 cut(s) 399, 693
HpyCH4V TGCA 6 cut(s) 239, 379, 676, 746, 758, 836
HpyF10VI GCNNNNNNNGC 6 cut(s) 245, 318, 389, 635, 752, 761
HpyF3I CTNAG 1 cut(s) 347
HpySE526I ACGT 2 cut(s) 399, 693
Hsp92II CATG 3 cut(s) 437, 532, 872
HspAI GCGC 1 cut(s) 359
Kpn2I TCCGGA 1 cut(s) 617
Kzo9I GATC 3 cut(s) 194, 226, 350
LmnI GCTCC 4 cut(s) 129, 388, 701, 769
Lsp1109I GCAGC 3 cut(s) 52, 379, 742
LweI GCATC 1 cut(s) 713
MaeI CTAG 3 cut(s) 308, 828, 857
MaeII ACGT 2 cut(s) 399, 693
MaeIII GTNAC 1 cut(s) 214
MalI GATC 3 cut(s) 196, 228, 352
MboI GATC 3 cut(s) 194, 226, 350
MboII GAAGA 1 cut(s) 76
MluCI AATT 6 cut(s) 49, 654, 677, 726, 796, 806
MlyI GAGTC 3 cut(s) 227, 415, 926
MmeI TCCRAC 2 cut(s) 70, 714
MnlI CCTC 8 cut(s) 86, 154, 313, 327, 377, 435, 813, 853
MroI TCCGGA 1 cut(s) 617
MroXI GAANNNNTTC 1 cut(s) 83
MspA1I CMGCKG 1 cut(s) 43
MspI CCGG 4 cut(s) 339, 447, 563, 618
MvaI CCWGG 5 cut(s) 103, 411, 579, 660, 768
MwoI GCNNNNNNNGC 6 cut(s) 245, 318, 389, 635, 752, 761
NciI CCSGG 5 cut(s) 339, 340, 447, 448, 564
NdeI CATATG 1 cut(s) 481
NdeII GATC 3 cut(s) 194, 226, 350
NlaIII CATG 3 cut(s) 437, 532, 872
NlaIV GGNNCC 2 cut(s) 258, 688
NmuCI GTSAC 1 cut(s) 214
PaeR7I CTCGAG 1 cut(s) 158
PagI TCATGA 1 cut(s) 868
PcsI WCGNNNNNNNCGW 3 cut(s) 74, 165, 174
PdmI GAANNNNTTC 1 cut(s) 83
PfeI GAWTC 2 cut(s) 25, 532
PfoI TCCNGGA 1 cut(s) 766
PkrI GCNGC 6 cut(s) 42, 131, 281, 314, 394, 757
PleI GAGTC 3 cut(s) 227, 414, 925
PpsI GAGTC 3 cut(s) 227, 414, 925
Ppu21I YACGTR 1 cut(s) 400
PshAI GACNNNNGTC 1 cut(s) 80
Psp6I CCWGG 5 cut(s) 101, 409, 577, 658, 766
PspGI CCWGG 5 cut(s) 101, 409, 577, 658, 766
PspN4I GGNNCC 2 cut(s) 258, 688
PspPI GGNCC 4 cut(s) 246, 256, 485, 687
PspXI VCTCGAGB 1 cut(s) 158
PstI CTGCAG 1 cut(s) 748
PstNI CAGNNNCTG 1 cut(s) 43
PvuII CAGCTG 1 cut(s) 43
RsaI GTAC 4 cut(s) 146, 473, 527, 561
RsaNI GTAC 4 cut(s) 145, 472, 526, 560
SatI GCNGC 6 cut(s) 41, 130, 280, 313, 393, 756
Sau3AI GATC 3 cut(s) 194, 226, 350
Sau96I GGNCC 4 cut(s) 246, 256, 485, 687
SbfI CCTGCAGG 1 cut(s) 748
SchI GAGTC 3 cut(s) 227, 415, 926
SdaI CCTGCAGG 1 cut(s) 748
SfaNI GCATC 1 cut(s) 713
SfcI CTRYAG 2 cut(s) 517, 744
Sfr274I CTCGAG 1 cut(s) 158
SinI GGWCC 3 cut(s) 256, 485, 687
SlaI CTCGAG 1 cut(s) 158
SmaI CCCGGG 2 cut(s) 340, 448
SmlI CTYRAG 1 cut(s) 158
SmoI CTYRAG 1 cut(s) 158
Sse8387I CCTGCAGG 1 cut(s) 748
Sse9I AATT 6 cut(s) 49, 654, 677, 726, 796, 806
SsiI CCGC 9 cut(s) 127, 130, 189, 254, 280, 313, 602, 638, 889
SspMI CTAG 3 cut(s) 308, 828, 857
TaaI ACNGT 2 cut(s) 293, 571
TaiI ACGT 2 cut(s) 402, 696
TaqI TCGA 3 cut(s) 138, 159, 915
TaqII GACCGA 1 cut(s) 359
TasI AATT 6 cut(s) 49, 654, 677, 726, 796, 806
TauI GCSGC 3 cut(s) 132, 282, 315
TfiI GAWTC 2 cut(s) 25, 532
TscAI CASTG 2 cut(s) 688, 703
TseFI GTSAC 1 cut(s) 214
TseI GCWGC 3 cut(s) 40, 392, 755
Tsp45I GTSAC 1 cut(s) 214
TspDTI ATGAA 2 cut(s) 545, 857
TspGWI ACGGA 1 cut(s) 513
TspMI CCCGGG 2 cut(s) 338, 446
TspRI CASTG 2 cut(s) 688, 703
VpaK11BI GGWCC 3 cut(s) 256, 485, 687
XapI RAATTY 1 cut(s) 654
XbaI TCTAGA 1 cut(s) 856
XhoI CTCGAG 1 cut(s) 158
XmaI CCCGGG 2 cut(s) 338, 446
XmiI GTMKAC 2 cut(s) 498, 632
XmnI GAANNNNTTC 1 cut(s) 83
XspI CTAG 3 cut(s) 308, 828, 857
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.