Rh2BG110300

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0001423
Physical Location & Seq
Forward (+)
9330194 .. 9333961
3768 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG110300.1

Sequence Viewer

Length: 843 bp
ATGGCTTACCCACAACAACAACAACAGAATCAACAACAACAGCAGCTGTTCAATTCGCCGTTCGGGGACACGACGTTGACGAAGGTCTTCGTCGGAGGGCTGGCCTGGGAGACCCAGAGCGAGACGCTCCGCCGCCACTTCGAGCAGTACGGCGATATACTCGAGGCCGTCGTCATCACCGATAAGAACACTGCCCGATCCAAAGGCTATGGCTTTGTCACATTTCGTGATCCCGACTCTGCAAGAAGGGCCTGTGCGGACCCCAATCCTGTTATTGATGGCCGCAGGGCTAACTGTAATCTTGCTTCTCTAGGCCGCCCTCGCCCATCATTCCATTTCCCCGGGCAACTGAGATCACCAGCGCCAATCCTCGGTCGTCTGCAAGCTCCAAGAGCTGCTTACGTGGGGAGTCCTGGTTATCACCACCCTCTTTCTCATGCTTATCAGCCCGGGTTTGTTTACCCTTCTTATGGGTACACAGCATATGGACCTGAATATGTCTACCCACAGCAGGGTGTCTATAGTCCGTACATGAATCAGCAATACCTTCAGATGTATGGTGTACCGGGGACAGTCAACCCCGGTGTATATCCTTACGGACAAGCGGGTCATTCTCTTTCCGGCAATCCTGCGTATACGGCGGTTCAAAGCTATGGAATTCCAGGCCATCATATAATGCAATTCGCTGGGTCCAACGTCAGTGGAGCATCACCAGTTGCCCTTCCCACAATTCAAACACCATATCCTGCAGGTATAGCTGCACCAGCTCCAGGACAGGCACAACTTTTACTTCCTACTAATTCTCCTCAATTCACCAGCAGTTCTGATCAAACTGCAGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

280

Amino Acids

30.35

Weight (kDa)

8.76

Isoelectric Point (pI)

59.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 29 - 86 8.8e-18 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 606
Acc36I ACCTGC 1 cut(s) 740
AccI GTMKAC 2 cut(s) 501, 635
AciI CCGC 7 cut(s) 130, 133, 257, 283, 316, 605, 641
AclWI GGATC 2 cut(s) 192, 224
AcoI YGGCCR 1 cut(s) 280
AcsI RAATTY 1 cut(s) 657
AcuI CTGAAG 1 cut(s) 533
AfaI GTAC 4 cut(s) 149, 476, 530, 564
AfiI CCNNNNNNNGG 5 cut(s) 371, 470, 511, 512, 770
AgsI TTSAA 3 cut(s) 52, 647, 734
AjnI CCWGG 4 cut(s) 104, 412, 661, 769
AluBI AGCT 6 cut(s) 46, 386, 395, 651, 758, 767
AluI AGCT 6 cut(s) 46, 386, 395, 651, 758, 767
Alw26I GTCTC 2 cut(s) 104, 116
AlwI GGATC 2 cut(s) 192, 224
AlwNI CAGNNNCTG 1 cut(s) 46
Ama87I CYCGRG 3 cut(s) 161, 341, 449
AoxI GGCC 6 cut(s) 102, 165, 249, 280, 313, 664
ApeKI GCWGC 3 cut(s) 43, 395, 758
ApoI RAATTY 1 cut(s) 657
Asp700I GAANNNNTTC 1 cut(s) 86
AspLEI GCGC 1 cut(s) 364
AspS9I GGNCC 4 cut(s) 249, 259, 488, 690
AsuC2I CCSGG 6 cut(s) 342, 343, 450, 451, 567, 582
AsuHPI GGTGA 5 cut(s) 169, 348, 413, 702, 805
AvaI CYCGRG 3 cut(s) 161, 341, 449
AvaII GGWCC 3 cut(s) 259, 488, 690
BarI GAAGNNNNNNTAC 2 cut(s) 289, 321
BbsI GAAGAC 1 cut(s) 79
BbvI GCAGC 3 cut(s) 55, 382, 745
BccI CCATC 3 cut(s) 272, 334, 675
BceAI ACGGC 4 cut(s) 43, 152, 166, 654
BciT130I CCWGG 4 cut(s) 106, 414, 663, 771
BclI TGATCA 1 cut(s) 826
BcnI CCSGG 6 cut(s) 342, 343, 450, 451, 567, 582
BcoDI GTCTC 2 cut(s) 104, 116
BfaI CTAG 1 cut(s) 311
BfmI CTRYAG 3 cut(s) 520, 747, 834
BfoI RGCGCY 1 cut(s) 365
BfuAI ACCTGC 1 cut(s) 740
BisI GCNGC 6 cut(s) 44, 133, 283, 316, 396, 759
BlsI GCNGC 6 cut(s) 45, 134, 284, 317, 397, 760
Bme18I GGWCC 3 cut(s) 259, 488, 690
BmeT110I CYCGRG 3 cut(s) 161, 341, 449
BmgT120I GGNCC 4 cut(s) 249, 259, 488, 690
BmiI GGNNCC 2 cut(s) 261, 691
BmsI GCATC 1 cut(s) 716
BoxI GACNNNNGTC 1 cut(s) 83
BpiI GAAGAC 1 cut(s) 79
BpmI CTGGAG 1 cut(s) 753
BpuMI CCSGG 6 cut(s) 342, 343, 450, 451, 567, 582
BsaAI YACGTR 1 cut(s) 403
BsaI GGTCTC 1 cut(s) 104
BsaJI CCNNGG 7 cut(s) 105, 340, 341, 370, 449, 566, 580
BsaXI ACNNNNNCTCC 4 cut(s) 400, 430, 787, 817
Bsc4I CCNNNNNNNGG 5 cut(s) 371, 470, 511, 512, 770
Bse1I ACTGG 1 cut(s) 713
BseBI CCWGG 4 cut(s) 106, 414, 663, 771
BseDI CCNNGG 7 cut(s) 105, 340, 341, 370, 449, 566, 580
BseLI CCNNNNNNNGG 5 cut(s) 371, 470, 511, 512, 770
BseMII CTCAG 1 cut(s) 341
BseNI ACTGG 1 cut(s) 713
BseRI GAGGAG 1 cut(s) 795
BseXI GCAGC 3 cut(s) 55, 382, 745
BseYI CCCAGC 1 cut(s) 686
BsgI GTGCAG 1 cut(s) 744
Bsh1285I CGRYCG 1 cut(s) 376
BshFI GGCC 6 cut(s) 104, 167, 251, 282, 315, 666
BsiEI CGRYCG 1 cut(s) 376
BsiHKCI CYCGRG 3 cut(s) 161, 341, 449
BsiSI CCGG 5 cut(s) 342, 450, 566, 582, 621
BslFI GGGAC 2 cut(s) 80, 583
BslI CCNNNNNNNGG 5 cut(s) 371, 470, 511, 512, 770
BsmAI GTCTC 2 cut(s) 104, 116
BsmBI CGTCTC 1 cut(s) 116
BsmFI GGGAC 2 cut(s) 80, 583
BsnI GGCC 6 cut(s) 104, 167, 251, 282, 315, 666
Bso31I GGTCTC 1 cut(s) 104
BsoBI CYCGRG 3 cut(s) 161, 341, 449
Bsp143I GATC 4 cut(s) 197, 229, 353, 826
BspACI CCGC 7 cut(s) 130, 133, 257, 283, 316, 605, 641
BspANI GGCC 6 cut(s) 104, 167, 251, 282, 315, 666
BspCNI CTCAG 1 cut(s) 342
BspLI GGNNCC 2 cut(s) 261, 691
BspMAI CTGCAG 2 cut(s) 751, 838
BspMI ACCTGC 1 cut(s) 740
BspPI GGATC 2 cut(s) 192, 224
BspTNI GGTCTC 1 cut(s) 104
BsrI ACTGG 1 cut(s) 713
BssECI CCNNGG 7 cut(s) 105, 340, 341, 370, 449, 566, 580
BssMI GATC 4 cut(s) 197, 229, 353, 826
BssNAI GTATAC 1 cut(s) 636
Bst1107I GTATAC 1 cut(s) 636
Bst2UI CCWGG 4 cut(s) 106, 414, 663, 771
Bst4CI ACNGT 2 cut(s) 296, 574
BstBAI YACGTR 1 cut(s) 403
BstC8I GCNNGC 2 cut(s) 102, 384
BstDEI CTNAG 1 cut(s) 350
BstH2I RGCGCY 1 cut(s) 365
BstHHI GCGC 1 cut(s) 364
BstKTI GATC 4 cut(s) 200, 232, 356, 829
BstMAI GTCTC 2 cut(s) 104, 116
BstMBI GATC 4 cut(s) 197, 229, 353, 826
BstMCI CGRYCG 1 cut(s) 376
BstMWI GCNNNNNNNGC 6 cut(s) 248, 321, 392, 638, 755, 764
BstNI CCWGG 4 cut(s) 106, 414, 663, 771
BstPAI GACNNNNGTC 1 cut(s) 83
BstSFI CTRYAG 3 cut(s) 520, 747, 834
BstV1I GCAGC 3 cut(s) 55, 382, 745
BstV2I GAAGAC 1 cut(s) 79
BstZ17I GTATAC 1 cut(s) 636
BsuRI GGCC 6 cut(s) 104, 167, 251, 282, 315, 666
BtsI GCAGTG 1 cut(s) 189
BtsIMutI CAGTG 2 cut(s) 189, 706
BveI ACCTGC 1 cut(s) 740
Cac8I GCNNGC 2 cut(s) 102, 384
CaiI CAGNNNCTG 1 cut(s) 46
CfoI GCGC 1 cut(s) 364
Cfr13I GGNCC 4 cut(s) 249, 259, 488, 690
Cfr9I CCCGGG 2 cut(s) 341, 449
CseI GACGC 1 cut(s) 133
Csp6I GTAC 4 cut(s) 148, 475, 529, 563
CspCI CAANNNNNGTGG 2 cut(s) 682, 717
CviAII CATG 2 cut(s) 437, 532
CviQI GTAC 4 cut(s) 148, 475, 529, 563
DdeI CTNAG 1 cut(s) 350
DpnI GATC 4 cut(s) 199, 231, 355, 828
DpnII GATC 4 cut(s) 197, 229, 353, 826
DrdI GACNNNNNNGTC 1 cut(s) 606
DseDI GACNNNNNNGTC 1 cut(s) 606
EaeI YGGCCR 1 cut(s) 280
EciI GGCGGA 1 cut(s) 119
Eco31I GGTCTC 1 cut(s) 104
Eco47I GGWCC 3 cut(s) 259, 488, 690
Eco57I CTGAAG 1 cut(s) 533
Eco88I CYCGRG 3 cut(s) 161, 341, 449
EcoO109I RGGNCCY 1 cut(s) 249
EcoRI GAATTC 1 cut(s) 657
EcoRII CCWGG 4 cut(s) 104, 412, 661, 769
Esp3I CGTCTC 1 cut(s) 116
FaeI CATG 2 cut(s) 440, 535
FalI AAGNNNNNCTT 2 cut(s) 382, 414
FaqI GGGAC 2 cut(s) 80, 583
FatI CATG 2 cut(s) 436, 531
FauI CCCGC 1 cut(s) 598
FauNDI CATATG 1 cut(s) 484
FbaI TGATCA 1 cut(s) 826
FblI GTMKAC 2 cut(s) 501, 635
Fnu4HI GCNGC 6 cut(s) 44, 133, 283, 316, 396, 759
Fsp4HI GCNGC 6 cut(s) 44, 133, 283, 316, 396, 759
FspBI CTAG 1 cut(s) 311
GlaI GCGC 1 cut(s) 363
GluI GCNGC 6 cut(s) 44, 133, 283, 316, 396, 759
GsaI CCCAGC 1 cut(s) 690
GsuI CTGGAG 1 cut(s) 753
HaeII RGCGCY 1 cut(s) 365
HaeIII GGCC 6 cut(s) 104, 167, 251, 282, 315, 666
HapII CCGG 5 cut(s) 342, 450, 566, 582, 621
HgaI GACGC 1 cut(s) 133
HhaI GCGC 1 cut(s) 364
Hin1II CATG 2 cut(s) 440, 535
Hin6I GCGC 1 cut(s) 362
HinP1I GCGC 1 cut(s) 362
HincII GTYRAC 2 cut(s) 78, 577
HindII GTYRAC 2 cut(s) 78, 577
HinfI GANTC 4 cut(s) 28, 236, 409, 535
HpaII CCGG 5 cut(s) 342, 450, 566, 582, 621
HphI GGTGA 5 cut(s) 169, 348, 413, 702, 805
Hpy166II GTNNAC 7 cut(s) 78, 460, 477, 502, 563, 577, 636
Hpy188I TCNGA 3 cut(s) 95, 552, 826
Hpy188III TCNNGA 2 cut(s) 227, 233
Hpy8I GTNNAC 7 cut(s) 78, 460, 477, 502, 563, 577, 636
Hpy99I CGWCG 3 cut(s) 76, 95, 173
HpyAV CCTTC 5 cut(s) 76, 240, 474, 557, 731
HpyCH4III ACNGT 2 cut(s) 296, 574
HpyCH4IV ACGT 3 cut(s) 74, 402, 696
HpyCH4V TGCA 6 cut(s) 242, 382, 679, 749, 761, 836
HpyF10VI GCNNNNNNNGC 6 cut(s) 248, 321, 392, 638, 755, 764
HpyF3I CTNAG 1 cut(s) 350
HpySE526I ACGT 3 cut(s) 74, 402, 696
Hsp92II CATG 2 cut(s) 440, 535
HspAI GCGC 1 cut(s) 362
Ksp22I TGATCA 1 cut(s) 826
Kzo9I GATC 4 cut(s) 197, 229, 353, 826
LmnI GCTCC 4 cut(s) 132, 391, 704, 772
Lsp1109I GCAGC 3 cut(s) 55, 382, 745
LweI GCATC 1 cut(s) 716
MaeI CTAG 1 cut(s) 311
MaeII ACGT 3 cut(s) 74, 402, 696
MaeIII GTNAC 1 cut(s) 217
MalI GATC 4 cut(s) 199, 231, 355, 828
MboI GATC 4 cut(s) 197, 229, 353, 826
MboII GAAGA 1 cut(s) 79
MluCI AATT 6 cut(s) 52, 657, 680, 729, 799, 809
MlyI GAGTC 2 cut(s) 230, 418
MmeI TCCRAC 2 cut(s) 73, 717
MnlI CCTC 6 cut(s) 89, 157, 330, 380, 438, 816
MroXI GAANNNNTTC 1 cut(s) 86
MspA1I CMGCKG 1 cut(s) 46
MspI CCGG 5 cut(s) 342, 450, 566, 582, 621
MvaI CCWGG 4 cut(s) 106, 414, 663, 771
MwoI GCNNNNNNNGC 6 cut(s) 248, 321, 392, 638, 755, 764
NciI CCSGG 6 cut(s) 342, 343, 450, 451, 567, 582
NdeI CATATG 1 cut(s) 484
NdeII GATC 4 cut(s) 197, 229, 353, 826
NlaIII CATG 2 cut(s) 440, 535
NlaIV GGNNCC 2 cut(s) 261, 691
NmuCI GTSAC 1 cut(s) 217
PaeR7I CTCGAG 1 cut(s) 161
PcsI WCGNNNNNNNCGW 3 cut(s) 77, 168, 177
PdmI GAANNNNTTC 1 cut(s) 86
PfeI GAWTC 2 cut(s) 28, 535
PfoI TCCNGGA 1 cut(s) 769
PkrI GCNGC 6 cut(s) 45, 134, 284, 317, 397, 760
PleI GAGTC 2 cut(s) 230, 417
PpsI GAGTC 2 cut(s) 230, 417
Ppu21I YACGTR 1 cut(s) 403
PshAI GACNNNNGTC 1 cut(s) 83
Psp6I CCWGG 4 cut(s) 104, 412, 661, 769
PspFI CCCAGC 1 cut(s) 686
PspGI CCWGG 4 cut(s) 104, 412, 661, 769
PspN4I GGNNCC 2 cut(s) 261, 691
PspPI GGNCC 4 cut(s) 249, 259, 488, 690
PspXI VCTCGAGB 1 cut(s) 161
PstI CTGCAG 2 cut(s) 751, 838
PstNI CAGNNNCTG 1 cut(s) 46
PvuII CAGCTG 1 cut(s) 46
RsaI GTAC 4 cut(s) 149, 476, 530, 564
RsaNI GTAC 4 cut(s) 148, 475, 529, 563
SatI GCNGC 6 cut(s) 44, 133, 283, 316, 396, 759
Sau3AI GATC 4 cut(s) 197, 229, 353, 826
Sau96I GGNCC 4 cut(s) 249, 259, 488, 690
SbfI CCTGCAGG 1 cut(s) 751
SchI GAGTC 2 cut(s) 230, 418
SdaI CCTGCAGG 1 cut(s) 751
SfaNI GCATC 1 cut(s) 716
SfcI CTRYAG 3 cut(s) 520, 747, 834
Sfr274I CTCGAG 1 cut(s) 161
SinI GGWCC 3 cut(s) 259, 488, 690
SlaI CTCGAG 1 cut(s) 161
SmaI CCCGGG 2 cut(s) 343, 451
SmlI CTYRAG 1 cut(s) 161
SmoI CTYRAG 1 cut(s) 161
Sse8387I CCTGCAGG 1 cut(s) 751
Sse9I AATT 6 cut(s) 52, 657, 680, 729, 799, 809
SsiI CCGC 7 cut(s) 130, 133, 257, 283, 316, 605, 641
SspMI CTAG 1 cut(s) 311
TaaI ACNGT 2 cut(s) 296, 574
TaiI ACGT 3 cut(s) 77, 405, 699
TaqI TCGA 2 cut(s) 141, 162
TaqII GACCGA 1 cut(s) 362
TasI AATT 6 cut(s) 52, 657, 680, 729, 799, 809
TauI GCSGC 3 cut(s) 135, 285, 318
TfiI GAWTC 2 cut(s) 28, 535
TscAI CASTG 2 cut(s) 196, 706
TseFI GTSAC 1 cut(s) 217
TseI GCWGC 3 cut(s) 43, 395, 758
Tsp45I GTSAC 1 cut(s) 217
TspDTI ATGAA 1 cut(s) 548
TspGWI ACGGA 2 cut(s) 516, 612
TspMI CCCGGG 2 cut(s) 341, 449
TspRI CASTG 2 cut(s) 196, 706
VpaK11BI GGWCC 3 cut(s) 259, 488, 690
XapI RAATTY 1 cut(s) 657
XhoI CTCGAG 1 cut(s) 161
XmaI CCCGGG 2 cut(s) 341, 449
XmiI GTMKAC 2 cut(s) 501, 635
XmnI GAANNNNTTC 1 cut(s) 86
XspI CTAG 1 cut(s) 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.