MD03G1146000.v1.1

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0001423
Physical Location & Seq
Forward (+)
15942509 .. 15942715
207 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1146000.v1.1.491

Sequence Viewer

Length: 207 bp
ATGCCTTATGGACATCCAAGACGAGCTTCTCCATACATTGGAGGCATGCAAGCTATCTGTGGGGCTTGCACTGGAGGATATGGCTACCAGCAGCCTCTTTCTTACAACTATCAACAAGGATTAGTTTATCCTCCATGTGGGTATGCAACATATGGACCTGAGTACGCTTATTCACAGGGTGTTTACAGCCCCTATGCGGGTCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000381 GO:0001501 GO:0001756 GO:0001947 GO:0002009 GO:0003002 GO:0003007 GO:0003143 GO:0003228 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006417 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0007368 GO:0007389 GO:0007507 GO:0007517 GO:0007519 GO:0008150 GO:0008152 GO:0009653 GO:0009790 GO:0009792 GO:0009799 GO:0009855 GO:0009887 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009896 GO:0009952 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010638 GO:0010720 GO:0010830 GO:0010831 GO:0014706 GO:0016070 GO:0016071 GO:0016202 GO:0017091 GO:0017148 GO:0019219 GO:0019222 GO:0022603 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031330 GO:0031331 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032956 GO:0032970 GO:0033043 GO:0033554 GO:0034248 GO:0034249 GO:0034641 GO:0035050 GO:0035239 GO:0035282 GO:0035295 GO:0035925 GO:0036002 GO:0043009 GO:0043170 GO:0043484 GO:0043487 GO:0043488 GO:0043489 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0045595 GO:0045597 GO:0045661 GO:0045663 GO:0045844 GO:0045934 GO:0045935 GO:0046483 GO:0048024 GO:0048255 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048562 GO:0048568 GO:0048598 GO:0048634 GO:0048636 GO:0048641 GO:0048643 GO:0048646 GO:0048701 GO:0048702 GO:0048704 GO:0048705 GO:0048706 GO:0048729 GO:0048731 GO:0048856 GO:0050684 GO:0050779 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051147 GO:0051149 GO:0051153 GO:0051155 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051493 GO:0051495 GO:0051716 GO:0060255 GO:0060284 GO:0060297 GO:0060298 GO:0060429 GO:0060537 GO:0060538 GO:0060562 GO:0061013 GO:0061014 GO:0061053 GO:0061061 GO:0061157 GO:0061158 GO:0061371 GO:0065007 GO:0065008 GO:0071704 GO:0072358 GO:0072359 GO:0080090 GO:0090304 GO:0097157 GO:0097159 GO:0110020 GO:1901360 GO:1901363 GO:1901861 GO:1901863 GO:1902115 GO:1902117 GO:1902369 GO:1902373 GO:1902809 GO:1902811 GO:1902903 GO:1902905 GO:1903311 GO:1903312 GO:1903313 GO:1904888 GO:1905868 GO:1905870 GO:1990715 GO:1990825 GO:2000026 GO:2000112 GO:2000113 GO:2000736 GO:2000738 GO:2000765 GO:2000766 GO:2001014 GO:2001016
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

69

Amino Acids

7.39

Weight (kDa)

7.67

Isoelectric Point (pI)

65.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 38
AciI CCGC 1 cut(s) 197
AdeI CACNNNGTG 1 cut(s) 179
AfaI GTAC 1 cut(s) 164
AfiI CCNNNNNNNGG 4 cut(s) 38, 137, 196, 197
AjuI GAANNNNNNNTTGG 2 cut(s) 10, 42
AluBI AGCT 2 cut(s) 26, 53
AluI AGCT 2 cut(s) 26, 53
ApeKI GCWGC 1 cut(s) 91
AspS9I GGNCC 1 cut(s) 155
AvaII GGWCC 1 cut(s) 155
BbvI GCAGC 1 cut(s) 103
BisI GCNGC 1 cut(s) 92
BlsI GCNGC 1 cut(s) 93
Bme18I GGWCC 1 cut(s) 155
BmgT120I GGNCC 1 cut(s) 155
BpmI CTGGAG 1 cut(s) 93
Bsc4I CCNNNNNNNGG 4 cut(s) 38, 137, 196, 197
Bse1I ACTGG 1 cut(s) 76
BseGI GGATG 1 cut(s) 13
BseLI CCNNNNNNNGG 4 cut(s) 38, 137, 196, 197
BseMII CTCAG 1 cut(s) 150
BseNI ACTGG 1 cut(s) 76
BseXI GCAGC 1 cut(s) 103
BslI CCNNNNNNNGG 4 cut(s) 38, 137, 196, 197
BspACI CCGC 1 cut(s) 197
BspCNI CTCAG 1 cut(s) 151
BsrI ACTGG 1 cut(s) 76
BstC8I GCNNGC 3 cut(s) 47, 51, 67
BstDEI CTNAG 1 cut(s) 159
BstF5I GGATG 1 cut(s) 13
BstNSI RCATGY 1 cut(s) 49
BstV1I GCAGC 1 cut(s) 103
BtsCI GGATG 1 cut(s) 13
BtsIMutI CAGTG 1 cut(s) 69
Cac8I GCNNGC 3 cut(s) 47, 51, 67
Cfr13I GGNCC 1 cut(s) 155
Csp6I GTAC 1 cut(s) 163
CviAII CATG 2 cut(s) 46, 135
CviJI RGCY 6 cut(s) 26, 53, 65, 84, 94, 189
CviKI_1 RGCY 6 cut(s) 26, 53, 65, 84, 94, 189
CviQI GTAC 1 cut(s) 163
DdeI CTNAG 1 cut(s) 159
DraIII CACNNNGTG 1 cut(s) 179
Eco47I GGWCC 1 cut(s) 155
FaeI CATG 2 cut(s) 49, 138
FaiI YATR 9 cut(s) 9, 34, 47, 81, 136, 144, 151, 153, 195
FalI AAGNNNNNCTT 2 cut(s) 10, 42
FatI CATG 2 cut(s) 45, 134
FauI CCCGC 1 cut(s) 190
FauNDI CATATG 1 cut(s) 151
Fnu4HI GCNGC 1 cut(s) 92
Fsp4HI GCNGC 1 cut(s) 92
GluI GCNGC 1 cut(s) 92
GsuI CTGGAG 1 cut(s) 93
Hin1II CATG 2 cut(s) 49, 138
Hpy166II GTNNAC 1 cut(s) 184
Hpy8I GTNNAC 1 cut(s) 184
HpyCH4V TGCA 3 cut(s) 49, 69, 146
HpyF3I CTNAG 1 cut(s) 159
Hsp92II CATG 2 cut(s) 49, 138
LpnPI CCDG 4 cut(s) 57, 101, 161, 171
Lsp1109I GCAGC 1 cut(s) 103
MnlI CCTC 4 cut(s) 35, 68, 105, 141
NdeI CATATG 1 cut(s) 151
NlaIII CATG 2 cut(s) 49, 138
NspI RCATGY 1 cut(s) 49
PaeI GCATGC 1 cut(s) 49
PflMI CCANNNNNTGG 1 cut(s) 38
PkrI GCNGC 1 cut(s) 93
PspPI GGNCC 1 cut(s) 155
RsaI GTAC 1 cut(s) 164
RsaNI GTAC 1 cut(s) 163
SatI GCNGC 1 cut(s) 92
Sau96I GGNCC 1 cut(s) 155
SetI ASST 3 cut(s) 28, 55, 160
SinI GGWCC 1 cut(s) 155
SphI GCATGC 1 cut(s) 49
SsiI CCGC 1 cut(s) 197
TscAI CASTG 1 cut(s) 76
TseI GCWGC 1 cut(s) 91
TspRI CASTG 1 cut(s) 76
Van91I CCANNNNNTGG 1 cut(s) 38
VpaK11BI GGWCC 1 cut(s) 155
XceI RCATGY 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.