AT1G76460

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0001423
Physical Location & Seq
Reverse (-)
28686181 .. 28689208
3028 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G76460.1

Sequence Viewer

Length: 858 bp
ATGGCGTATCAGCCTGTTCCGGGTTCTGGGTTTCACTACTTGAACTCTCCTTTCGGTGATACAACTTTCACAAAGGTGTTCGTCGGTGGTCTTGCTTGGGAAACTCAAAGTGAAACTCTTCGCCAGCATTTCGAACAGTACGGTGAAATCCTTGAAGCTGTTGTCATTGCTGATAAGAACACTGGTCGATCCAAAGGATATGGCTTTGTGACATTCCGAGATCCAGAAGCTGCTAGGAGAGCTTGTGCTGACCCTACTCCGATTATAGACGGTAGACGTGCAAACTGTAATCTTGCTTCCCTTGGGAGACCTCGGCCTCCATTGCCCTATGCAGTGATACCTAACATGCCTGGACGCTTAAGACCTGCTTCCCCGTACATTGGAAATGTGCAGGGTCCTCGAGGTTCACTTATTGGAAATTATCCGTATCAGCAACCACTTCCATATAACTACCAGCAAGGAGTTGTCTATCCTTATGGAGTAACCGCTTATGGACCCGAGTACATGTACTCGCAATCACAGGGTTTATATAGTCCATACATGGGTCAGCAATACCTTCAGGTCTATGGAGTACCTGGAGCAGTGAATTCACCCGTTTATCAATACGGGCAACTAAGTCAGACTATTCCTAATGGCCATGGTTATACAGCAGTTCAAGGCTATTCGGTTCCAGGAAGCCATATTCTGCAGCTTGGTGGACCCACTGTCAGTACGATGACCACTTCATCTATGCCTGCTCTTCAAGCTCCTTACCCTTCAGGTATACCAGGCCCTGCTCCCGTACAGTCGCATATCATTGTCCACTCCCCTCAATTTATGCAGAGTACCGCTTCTGACCAAACAACAAGTTATTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000381 GO:0001501 GO:0001756 GO:0001947 GO:0002009 GO:0003002 GO:0003007 GO:0003143 GO:0003228 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006417 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0007368 GO:0007389 GO:0007507 GO:0007517 GO:0007519 GO:0008150 GO:0008152 GO:0009653 GO:0009790 GO:0009792 GO:0009799 GO:0009855 GO:0009887 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009896 GO:0009952 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010638 GO:0010720 GO:0010830 GO:0010831 GO:0014706 GO:0016070 GO:0016071 GO:0016202 GO:0017091 GO:0017148 GO:0019219 GO:0019222 GO:0022603 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031330 GO:0031331 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032956 GO:0032970 GO:0033043 GO:0033554 GO:0034248 GO:0034249 GO:0034641 GO:0035050 GO:0035239 GO:0035282 GO:0035295 GO:0035925 GO:0036002 GO:0043009 GO:0043170 GO:0043484 GO:0043487 GO:0043488 GO:0043489 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0045595 GO:0045597 GO:0045661 GO:0045663 GO:0045844 GO:0045934 GO:0045935 GO:0046483 GO:0048024 GO:0048255 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048562 GO:0048568 GO:0048598 GO:0048634 GO:0048636 GO:0048641 GO:0048643 GO:0048646 GO:0048701 GO:0048702 GO:0048704 GO:0048705 GO:0048706 GO:0048729 GO:0048731 GO:0048856 GO:0050684 GO:0050779 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051147 GO:0051149 GO:0051153 GO:0051155 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051493 GO:0051495 GO:0051716 GO:0060255 GO:0060284 GO:0060297 GO:0060298 GO:0060429 GO:0060537 GO:0060538 GO:0060562 GO:0061013 GO:0061014 GO:0061053 GO:0061061 GO:0061157 GO:0061158 GO:0061371 GO:0065007 GO:0065008 GO:0071704 GO:0072358 GO:0072359 GO:0080090 GO:0090304 GO:0097157 GO:0097159 GO:0110020 GO:1901360 GO:1901363 GO:1901861 GO:1901863 GO:1902115 GO:1902117 GO:1902369 GO:1902373 GO:1902809 GO:1902811 GO:1902903 GO:1902905 GO:1903311 GO:1903312 GO:1903313 GO:1904888 GO:1905868 GO:1905870 GO:1990715 GO:1990825 GO:2000026 GO:2000112 GO:2000113 GO:2000736 GO:2000738 GO:2000765 GO:2000766 GO:2001014 GO:2001016
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

285

Amino Acids

30.92

Weight (kDa)

8.39

Isoelectric Point (pI)

63.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 26 - 82 5.1e-18 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 399
Acc36I ACCTGC 1 cut(s) 373
AccI GTMKAC 2 cut(s) 274, 763
AciI CCGC 2 cut(s) 486, 828
AclWI GGATC 2 cut(s) 183, 215
AcoI YGGCCR 1 cut(s) 634
AcsI RAATTY 1 cut(s) 586
AcuI CTGAAG 2 cut(s) 542, 741
AfaI GTAC 8 cut(s) 140, 377, 503, 509, 573, 712, 783, 826
AfiI CCNNNNNNNGG 4 cut(s) 20, 26, 380, 542
AflII CTTAAG 1 cut(s) 358
AflIII ACRYGT 1 cut(s) 504
AgsI TTSAA 4 cut(s) 43, 155, 656, 743
AhdI GACNNNNNGTC 1 cut(s) 704
AjiI CACGTC 1 cut(s) 278
AjnI CCWGG 4 cut(s) 349, 574, 670, 766
AleI CACNNNNGTG 1 cut(s) 74
AluBI AGCT 5 cut(s) 158, 230, 242, 691, 746
AluI AGCT 5 cut(s) 158, 230, 242, 691, 746
Alw26I GTCTC 1 cut(s) 301
AlwI GGATC 2 cut(s) 183, 215
AlwNI CAGNNNCTG 2 cut(s) 230, 773
Ama87I CYCGRG 2 cut(s) 399, 497
AoxI GGCC 3 cut(s) 314, 634, 769
ApeKI GCWGC 2 cut(s) 230, 688
ApoI RAATTY 1 cut(s) 586
Asp700I GAANNNNTTC 1 cut(s) 117
AspS9I GGNCC 4 cut(s) 395, 494, 698, 770
AsuC2I CCSGG 1 cut(s) 21
AsuHPI GGTGA 3 cut(s) 68, 155, 582
AsuII TTCGAA 1 cut(s) 132
AvaI CYCGRG 2 cut(s) 399, 497
AvaII GGWCC 3 cut(s) 395, 494, 698
BalI TGGCCA 1 cut(s) 636
BarI GAAGNNNNNNTAC 2 cut(s) 280, 312
BbvI GCAGC 2 cut(s) 217, 700
BcgI CGANNNNNNTGC 2 cut(s) 380, 414
BciT130I CCWGG 4 cut(s) 351, 576, 672, 768
BcnI CCSGG 1 cut(s) 21
BcoDI GTCTC 1 cut(s) 301
BfaI CTAG 1 cut(s) 234
BfmI CTRYAG 1 cut(s) 686
BfrI CTTAAG 1 cut(s) 358
BfuAI ACCTGC 1 cut(s) 373
BisI GCNGC 2 cut(s) 231, 689
BlsI GCNGC 2 cut(s) 232, 690
Bme1390I CCNGG 5 cut(s) 21, 351, 576, 672, 768
Bme18I GGWCC 3 cut(s) 395, 494, 698
BmeRI GACNNNNNGTC 1 cut(s) 704
BmeT110I CYCGRG 2 cut(s) 399, 497
BmgBI CACGTC 1 cut(s) 278
BmgT120I GGNCC 4 cut(s) 395, 494, 698, 770
BmiI GGNNCC 4 cut(s) 396, 496, 669, 700
BmrFI CCNGG 5 cut(s) 21, 351, 576, 672, 768
BpmI CTGGAG 1 cut(s) 597
Bpu14I TTCGAA 1 cut(s) 132
BpuMI CCSGG 1 cut(s) 21
BsaI GGTCTC 1 cut(s) 301
BsaJI CCNNGG 3 cut(s) 301, 311, 637
BsaXI ACNNNNNCTCC 2 cut(s) 229, 259
Bsc4I CCNNNNNNNGG 4 cut(s) 20, 26, 380, 542
Bse1I ACTGG 1 cut(s) 187
Bse3DI GCAATG 2 cut(s) 165, 320
BseBI CCWGG 4 cut(s) 351, 576, 672, 768
BseDI CCNNGG 3 cut(s) 301, 311, 637
BseLI CCNNNNNNNGG 4 cut(s) 20, 26, 380, 542
BseMI GCAATG 2 cut(s) 165, 320
BseNI ACTGG 1 cut(s) 187
BseXI GCAGC 2 cut(s) 217, 700
BsgI GTGCAG 1 cut(s) 410
BshFI GGCC 3 cut(s) 316, 636, 771
BsiHKCI CYCGRG 2 cut(s) 399, 497
BsiSI CCGG 1 cut(s) 20
BslI CCNNNNNNNGG 4 cut(s) 20, 26, 380, 542
BsmAI GTCTC 1 cut(s) 301
BsnI GGCC 3 cut(s) 316, 636, 771
Bso31I GGTCTC 1 cut(s) 301
BsoBI CYCGRG 2 cut(s) 399, 497
Bsp119I TTCGAA 1 cut(s) 132
Bsp143I GATC 2 cut(s) 188, 220
Bsp19I CCATGG 1 cut(s) 637
BspACI CCGC 2 cut(s) 486, 828
BspANI GGCC 3 cut(s) 316, 636, 771
BspLI GGNNCC 4 cut(s) 396, 496, 669, 700
BspMAI CTGCAG 1 cut(s) 690
BspMI ACCTGC 1 cut(s) 373
BspPI GGATC 2 cut(s) 183, 215
BspQI GCTCTTC 1 cut(s) 744
BspT104I TTCGAA 1 cut(s) 132
BspTI CTTAAG 1 cut(s) 358
BspTNI GGTCTC 1 cut(s) 301
BsrDI GCAATG 2 cut(s) 165, 320
BsrI ACTGG 1 cut(s) 187
BssECI CCNNGG 3 cut(s) 301, 311, 637
BssMI GATC 2 cut(s) 188, 220
BssNAI GTATAC 1 cut(s) 764
BssT1I CCWWGG 2 cut(s) 301, 637
Bst1107I GTATAC 1 cut(s) 764
Bst2UI CCWGG 4 cut(s) 351, 576, 672, 768
Bst4CI ACNGT 6 cut(s) 138, 143, 272, 287, 706, 786
Bst6I CTCTTC 2 cut(s) 123, 744
BstAFI CTTAAG 1 cut(s) 358
BstBI TTCGAA 1 cut(s) 132
BstC8I GCNNGC 2 cut(s) 125, 735
BstDEI CTNAG 1 cut(s) 614
BstDSI CCRYGG 1 cut(s) 637
BstKTI GATC 2 cut(s) 191, 223
BstMAI GTCTC 1 cut(s) 301
BstMBI GATC 2 cut(s) 188, 220
BstMWI GCNNNNNNNGC 3 cut(s) 239, 322, 743
BstNI CCWGG 4 cut(s) 351, 576, 672, 768
BstNSI RCATGY 2 cut(s) 349, 508
BstSCI CCNGG 5 cut(s) 19, 349, 574, 670, 766
BstSFI CTRYAG 1 cut(s) 686
BstV1I GCAGC 2 cut(s) 217, 700
BstX2I RGATCY 1 cut(s) 220
BstYI RGATCY 1 cut(s) 220
BstZ17I GTATAC 1 cut(s) 764
BsuRI GGCC 3 cut(s) 316, 636, 771
BtgI CCRYGG 1 cut(s) 637
BtrI CACGTC 1 cut(s) 278
BtsI GCAGTG 2 cut(s) 339, 588
BtsIMutI CAGTG 4 cut(s) 180, 339, 588, 702
BveI ACCTGC 1 cut(s) 373
Cac8I GCNNGC 2 cut(s) 125, 735
CaiI CAGNNNCTG 2 cut(s) 230, 773
Cfr13I GGNCC 4 cut(s) 395, 494, 698, 770
CseI GACGC 1 cut(s) 363
Csp6I GTAC 8 cut(s) 139, 376, 502, 508, 572, 711, 782, 825
CviAII CATG 4 cut(s) 346, 505, 541, 638
CviQI GTAC 8 cut(s) 139, 376, 502, 508, 572, 711, 782, 825
DdeI CTNAG 1 cut(s) 614
DpnI GATC 2 cut(s) 190, 222
DpnII GATC 2 cut(s) 188, 220
DriI GACNNNNNGTC 1 cut(s) 704
EaeI YGGCCR 1 cut(s) 634
Eam1104I CTCTTC 2 cut(s) 123, 744
Eam1105I GACNNNNNGTC 1 cut(s) 704
EarI CTCTTC 2 cut(s) 123, 744
Eco130I CCWWGG 2 cut(s) 301, 637
Eco31I GGTCTC 1 cut(s) 301
Eco47I GGWCC 3 cut(s) 395, 494, 698
Eco57I CTGAAG 2 cut(s) 542, 741
Eco88I CYCGRG 2 cut(s) 399, 497
EcoO109I RGGNCCY 2 cut(s) 395, 770
EcoRI GAATTC 1 cut(s) 586
EcoRII CCWGG 4 cut(s) 349, 574, 670, 766
EcoT14I CCWWGG 2 cut(s) 301, 637
ErhI CCWWGG 2 cut(s) 301, 637
FaeI CATG 4 cut(s) 349, 508, 544, 641
FalI AAGNNNNNCTT 3 cut(s) 352, 384, 838
FatI CATG 4 cut(s) 345, 504, 540, 637
FblI GTMKAC 2 cut(s) 274, 763
Fnu4HI GCNGC 2 cut(s) 231, 689
Fsp4HI GCNGC 2 cut(s) 231, 689
FspBI CTAG 1 cut(s) 234
GluI GCNGC 2 cut(s) 231, 689
GsuI CTGGAG 1 cut(s) 597
HaeIII GGCC 3 cut(s) 316, 636, 771
HapII CCGG 1 cut(s) 20
HgaI GACGC 1 cut(s) 363
Hin1II CATG 4 cut(s) 349, 508, 544, 641
HpaII CCGG 1 cut(s) 20
HphI GGTGA 3 cut(s) 68, 155, 582
Hpy166II GTNNAC 5 cut(s) 275, 407, 698, 764, 802
Hpy188I TCNGA 4 cut(s) 218, 261, 621, 835
Hpy188III TCNNGA 2 cut(s) 224, 855
Hpy8I GTNNAC 5 cut(s) 275, 407, 698, 764, 802
Hpy99I CGWCG 1 cut(s) 86
HpyAV CCTTC 2 cut(s) 566, 765
HpyCH4III ACNGT 6 cut(s) 138, 143, 272, 287, 706, 786
HpyCH4IV ACGT 1 cut(s) 277
HpyCH4V TGCA 5 cut(s) 281, 332, 391, 688, 820
HpyF10VI GCNNNNNNNGC 3 cut(s) 239, 322, 743
HpyF3I CTNAG 1 cut(s) 614
HpySE526I ACGT 1 cut(s) 277
Hsp92II CATG 4 cut(s) 349, 508, 544, 641
Kzo9I GATC 2 cut(s) 188, 220
LguI GCTCTTC 1 cut(s) 744
LmnI GCTCC 3 cut(s) 578, 751, 781
Lsp1109I GCAGC 2 cut(s) 217, 700
MaeI CTAG 1 cut(s) 234
MaeII ACGT 1 cut(s) 277
MaeIII GTNAC 2 cut(s) 208, 481
MalI GATC 2 cut(s) 190, 222
MboI GATC 2 cut(s) 188, 220
MboII GAAGA 2 cut(s) 110, 731
MflI RGATCY 1 cut(s) 220
MlsI TGGCCA 1 cut(s) 636
MluCI AATT 3 cut(s) 418, 586, 812
MluNI TGGCCA 1 cut(s) 636
MnlI CCTC 5 cut(s) 321, 327, 395, 408, 819
Mox20I TGGCCA 1 cut(s) 636
MroXI GAANNNNTTC 1 cut(s) 117
MscI TGGCCA 1 cut(s) 636
MseI TTAA 1 cut(s) 359
MslI CAYNNNNRTG 1 cut(s) 74
Msp20I TGGCCA 1 cut(s) 636
MspCI CTTAAG 1 cut(s) 358
MspI CCGG 1 cut(s) 20
MspR9I CCNGG 5 cut(s) 21, 351, 576, 672, 768
MvaI CCWGG 4 cut(s) 351, 576, 672, 768
MwoI GCNNNNNNNGC 3 cut(s) 239, 322, 743
NciI CCSGG 1 cut(s) 21
NcoI CCATGG 1 cut(s) 637
NdeII GATC 2 cut(s) 188, 220
NlaIII CATG 4 cut(s) 349, 508, 544, 641
NlaIV GGNNCC 4 cut(s) 396, 496, 669, 700
NmeAIII GCCGAG 1 cut(s) 292
NmuCI GTSAC 1 cut(s) 208
NspI RCATGY 2 cut(s) 349, 508
NspV TTCGAA 1 cut(s) 132
OliI CACNNNNGTG 1 cut(s) 74
PaeR7I CTCGAG 1 cut(s) 399
PciI ACATGT 1 cut(s) 504
PciSI GCTCTTC 1 cut(s) 744
PdmI GAANNNNTTC 1 cut(s) 117
PfoI TCCNGGA 1 cut(s) 670
PkrI GCNGC 2 cut(s) 232, 690
PpuMI RGGWCCY 1 cut(s) 395
PscI ACATGT 1 cut(s) 504
Psp5II RGGWCCY 1 cut(s) 395
Psp6I CCWGG 4 cut(s) 349, 574, 670, 766
PspGI CCWGG 4 cut(s) 349, 574, 670, 766
PspN4I GGNNCC 4 cut(s) 396, 496, 669, 700
PspPI GGNCC 4 cut(s) 395, 494, 698, 770
PspPPI RGGWCCY 1 cut(s) 395
PspXI VCTCGAGB 1 cut(s) 399
PstI CTGCAG 1 cut(s) 690
PstNI CAGNNNCTG 2 cut(s) 230, 773
PsuI RGATCY 1 cut(s) 220
RsaI GTAC 8 cut(s) 140, 377, 503, 509, 573, 712, 783, 826
RsaNI GTAC 8 cut(s) 139, 376, 502, 508, 572, 711, 782, 825
RseI CAYNNNNRTG 1 cut(s) 74
SapI GCTCTTC 1 cut(s) 744
SaqAI TTAA 1 cut(s) 359
SatI GCNGC 2 cut(s) 231, 689
Sau3AI GATC 2 cut(s) 188, 220
Sau96I GGNCC 4 cut(s) 395, 494, 698, 770
ScrFI CCNGG 5 cut(s) 21, 351, 576, 672, 768
SfcI CTRYAG 1 cut(s) 686
Sfr274I CTCGAG 1 cut(s) 399
SfuI TTCGAA 1 cut(s) 132
SinI GGWCC 3 cut(s) 395, 494, 698
SlaI CTCGAG 1 cut(s) 399
SmiMI CAYNNNNRTG 1 cut(s) 74
SmlI CTYRAG 2 cut(s) 358, 399
SmoI CTYRAG 2 cut(s) 358, 399
Sse9I AATT 3 cut(s) 418, 586, 812
SsiI CCGC 2 cut(s) 486, 828
SspMI CTAG 1 cut(s) 234
StyD4I CCNGG 5 cut(s) 19, 349, 574, 670, 766
StyI CCWWGG 2 cut(s) 301, 637
TaaI ACNGT 6 cut(s) 138, 143, 272, 287, 706, 786
TaiI ACGT 1 cut(s) 280
TaqI TCGA 3 cut(s) 132, 187, 400
TasI AATT 3 cut(s) 418, 586, 812
TatI WGTACW 2 cut(s) 501, 507
Tru1I TTAA 1 cut(s) 359
Tru9I TTAA 1 cut(s) 359
TscAI CASTG 4 cut(s) 187, 339, 588, 709
TseFI GTSAC 1 cut(s) 208
TseI GCWGC 2 cut(s) 230, 688
Tsp45I GTSAC 1 cut(s) 208
TspDTI ATGAA 1 cut(s) 714
TspGWI ACGGA 1 cut(s) 414
TspRI CASTG 4 cut(s) 187, 339, 588, 709
Vha464I CTTAAG 1 cut(s) 358
VpaK11BI GGWCC 3 cut(s) 395, 494, 698
XapI RAATTY 1 cut(s) 586
XceI RCATGY 2 cut(s) 349, 508
XhoI CTCGAG 1 cut(s) 399
XmiI GTMKAC 2 cut(s) 274, 763
XmnI GAANNNNTTC 1 cut(s) 117
XspI CTAG 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.