Rh2AG108100

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0001423
Physical Location & Seq
Forward (+)
9547994 .. 9551823
3830 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG108100.1

Sequence Viewer

Length: 549 bp
ATGGCTTACCCACAACAACAACAGAATCAACAACAACAGCAGCTGTTCAATTCGCCGTTCGGGGACACGACGTTGACGAAGGTCTTCGTCGGAGGGCTGGCCTGGGAGACCCAGAGCGAGACGCTCCGCCGCCACTTCGAGCAGTACGGCGACATACTCGAGGCCGTCGTCATCACCGATAAGAACACCGCCCGATCCAAAGGCTATGGCTTTGTCACATTTCGTGATCCCGACTCTGCAAGAAGGGCCTGTGCGGACCCCAATCCTGTTATTGATGGCCGCAGGGCTAACTGTAACCTTGCTTCTCTAGGCCGCCCTCGCCCATCATTCCATTTCCCCGGGCAACTGAGATCACCAGCGCCAATCCTCGGTCGTCTGCAAGCTCCAAGAGCTGCTTACGTGGGGAGTCCTGGTTATCACCACCCTCTTTCTCATGCTTATCAGCCCGGGTTTGTTTACCCTCCTTATGGGTACACAGCATATGGACCTGAATATGTCTACCCACAGGTGAATATTGTGTACATAATTACAGATTTTATATTGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

182

Amino Acids

20.46

Weight (kDa)

8.53

Isoelectric Point (pI)

61.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 28 - 85 3.9e-18 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 498
AciI CCGC 6 cut(s) 127, 130, 189, 254, 280, 313
AclWI GGATC 2 cut(s) 189, 221
AcoI YGGCCR 1 cut(s) 277
AfaI GTAC 3 cut(s) 146, 473, 521
AfiI CCNNNNNNNGG 2 cut(s) 368, 467
AgsI TTSAA 1 cut(s) 49
AjnI CCWGG 2 cut(s) 101, 409
AluBI AGCT 3 cut(s) 43, 383, 392
AluI AGCT 3 cut(s) 43, 383, 392
Alw26I GTCTC 2 cut(s) 101, 113
AlwI GGATC 2 cut(s) 189, 221
AlwNI CAGNNNCTG 1 cut(s) 43
Ama87I CYCGRG 3 cut(s) 158, 338, 446
AoxI GGCC 5 cut(s) 99, 162, 246, 277, 310
ApeKI GCWGC 2 cut(s) 40, 392
Asp700I GAANNNNTTC 1 cut(s) 83
AspLEI GCGC 1 cut(s) 361
AspS9I GGNCC 3 cut(s) 246, 256, 485
AsuC2I CCSGG 4 cut(s) 339, 340, 447, 448
AsuHPI GGTGA 4 cut(s) 166, 345, 410, 520
AvaI CYCGRG 3 cut(s) 158, 338, 446
AvaII GGWCC 2 cut(s) 256, 485
BarI GAAGNNNNNNTAC 2 cut(s) 286, 318
BbsI GAAGAC 1 cut(s) 76
BbvI GCAGC 2 cut(s) 52, 379
BccI CCATC 2 cut(s) 269, 331
BceAI ACGGC 3 cut(s) 40, 149, 163
BciT130I CCWGG 2 cut(s) 103, 411
BcnI CCSGG 4 cut(s) 339, 340, 447, 448
BcoDI GTCTC 2 cut(s) 101, 113
BfaI CTAG 1 cut(s) 308
BfoI RGCGCY 1 cut(s) 362
BisI GCNGC 5 cut(s) 41, 130, 280, 313, 393
BlsI GCNGC 5 cut(s) 42, 131, 281, 314, 394
Bme1390I CCNGG 6 cut(s) 103, 339, 340, 411, 447, 448
Bme18I GGWCC 2 cut(s) 256, 485
BmeT110I CYCGRG 3 cut(s) 158, 338, 446
BmgT120I GGNCC 3 cut(s) 246, 256, 485
BmiI GGNNCC 1 cut(s) 258
BmrFI CCNGG 6 cut(s) 103, 339, 340, 411, 447, 448
BoxI GACNNNNGTC 1 cut(s) 80
BpiI GAAGAC 1 cut(s) 76
BpuMI CCSGG 4 cut(s) 339, 340, 447, 448
BsaAI YACGTR 1 cut(s) 400
BsaI GGTCTC 1 cut(s) 101
BsaJI CCNNGG 5 cut(s) 102, 337, 338, 367, 446
BsaXI ACNNNNNCTCC 2 cut(s) 397, 427
Bsc4I CCNNNNNNNGG 2 cut(s) 368, 467
BseBI CCWGG 2 cut(s) 103, 411
BseDI CCNNGG 5 cut(s) 102, 337, 338, 367, 446
BseLI CCNNNNNNNGG 2 cut(s) 368, 467
BseMII CTCAG 1 cut(s) 338
BseXI GCAGC 2 cut(s) 52, 379
Bsh1285I CGRYCG 1 cut(s) 373
BshFI GGCC 5 cut(s) 101, 164, 248, 279, 312
BsiEI CGRYCG 1 cut(s) 373
BsiHKCI CYCGRG 3 cut(s) 158, 338, 446
BsiSI CCGG 2 cut(s) 339, 447
BslFI GGGAC 1 cut(s) 77
BslI CCNNNNNNNGG 2 cut(s) 368, 467
BsmAI GTCTC 2 cut(s) 101, 113
BsmBI CGTCTC 1 cut(s) 113
BsmFI GGGAC 1 cut(s) 77
BsnI GGCC 5 cut(s) 101, 164, 248, 279, 312
Bso31I GGTCTC 1 cut(s) 101
BsoBI CYCGRG 3 cut(s) 158, 338, 446
Bsp1407I TGTACA 1 cut(s) 519
Bsp143I GATC 3 cut(s) 194, 226, 350
BspACI CCGC 6 cut(s) 127, 130, 189, 254, 280, 313
BspANI GGCC 5 cut(s) 101, 164, 248, 279, 312
BspCNI CTCAG 1 cut(s) 339
BspLI GGNNCC 1 cut(s) 258
BspPI GGATC 2 cut(s) 189, 221
BspTNI GGTCTC 1 cut(s) 101
BsrGI TGTACA 1 cut(s) 519
BssECI CCNNGG 5 cut(s) 102, 337, 338, 367, 446
BssMI GATC 3 cut(s) 194, 226, 350
Bst2UI CCWGG 2 cut(s) 103, 411
Bst4CI ACNGT 1 cut(s) 293
BstAUI TGTACA 1 cut(s) 519
BstBAI YACGTR 1 cut(s) 400
BstC8I GCNNGC 2 cut(s) 99, 381
BstDEI CTNAG 1 cut(s) 347
BstH2I RGCGCY 1 cut(s) 362
BstHHI GCGC 1 cut(s) 361
BstKTI GATC 3 cut(s) 197, 229, 353
BstMAI GTCTC 2 cut(s) 101, 113
BstMBI GATC 3 cut(s) 194, 226, 350
BstMCI CGRYCG 1 cut(s) 373
BstMWI GCNNNNNNNGC 3 cut(s) 245, 318, 389
BstNI CCWGG 2 cut(s) 103, 411
BstPAI GACNNNNGTC 1 cut(s) 80
BstSCI CCNGG 6 cut(s) 101, 337, 338, 409, 445, 446
BstV1I GCAGC 2 cut(s) 52, 379
BstV2I GAAGAC 1 cut(s) 76
BsuRI GGCC 5 cut(s) 101, 164, 248, 279, 312
Cac8I GCNNGC 2 cut(s) 99, 381
CaiI CAGNNNCTG 1 cut(s) 43
CfoI GCGC 1 cut(s) 361
Cfr13I GGNCC 3 cut(s) 246, 256, 485
Cfr9I CCCGGG 2 cut(s) 338, 446
CseI GACGC 1 cut(s) 130
Csp6I GTAC 3 cut(s) 145, 472, 520
CviAII CATG 1 cut(s) 434
CviQI GTAC 3 cut(s) 145, 472, 520
DdeI CTNAG 1 cut(s) 347
DpnI GATC 3 cut(s) 196, 228, 352
DpnII GATC 3 cut(s) 194, 226, 350
EaeI YGGCCR 1 cut(s) 277
EciI GGCGGA 1 cut(s) 116
Eco31I GGTCTC 1 cut(s) 101
Eco47I GGWCC 2 cut(s) 256, 485
Eco88I CYCGRG 3 cut(s) 158, 338, 446
EcoO109I RGGNCCY 1 cut(s) 246
EcoRII CCWGG 2 cut(s) 101, 409
Esp3I CGTCTC 1 cut(s) 113
FaeI CATG 1 cut(s) 437
FaiI YATR 9 cut(s) 155, 207, 435, 468, 481, 483, 495, 524, 539
FalI AAGNNNNNCTT 2 cut(s) 379, 411
FaqI GGGAC 1 cut(s) 77
FatI CATG 1 cut(s) 433
FauNDI CATATG 1 cut(s) 481
FblI GTMKAC 1 cut(s) 498
Fnu4HI GCNGC 5 cut(s) 41, 130, 280, 313, 393
Fsp4HI GCNGC 5 cut(s) 41, 130, 280, 313, 393
FspBI CTAG 1 cut(s) 308
GlaI GCGC 1 cut(s) 360
GluI GCNGC 5 cut(s) 41, 130, 280, 313, 393
HaeII RGCGCY 1 cut(s) 362
HaeIII GGCC 5 cut(s) 101, 164, 248, 279, 312
HapII CCGG 2 cut(s) 339, 447
HgaI GACGC 1 cut(s) 130
HhaI GCGC 1 cut(s) 361
Hin1II CATG 1 cut(s) 437
Hin6I GCGC 1 cut(s) 359
HinP1I GCGC 1 cut(s) 359
HincII GTYRAC 1 cut(s) 75
HindII GTYRAC 1 cut(s) 75
HinfI GANTC 3 cut(s) 25, 233, 406
HpaII CCGG 2 cut(s) 339, 447
HphI GGTGA 4 cut(s) 166, 345, 410, 520
Hpy166II GTNNAC 5 cut(s) 75, 457, 474, 499, 520
Hpy188I TCNGA 1 cut(s) 92
Hpy188III TCNNGA 2 cut(s) 224, 230
Hpy8I GTNNAC 5 cut(s) 75, 457, 474, 499, 520
Hpy99I CGWCG 3 cut(s) 73, 92, 170
HpyAV CCTTC 2 cut(s) 73, 237
HpyCH4III ACNGT 1 cut(s) 293
HpyCH4IV ACGT 2 cut(s) 71, 399
HpyCH4V TGCA 2 cut(s) 239, 379
HpyF10VI GCNNNNNNNGC 3 cut(s) 245, 318, 389
HpyF3I CTNAG 1 cut(s) 347
HpySE526I ACGT 2 cut(s) 71, 399
Hsp92II CATG 1 cut(s) 437
HspAI GCGC 1 cut(s) 359
Kzo9I GATC 3 cut(s) 194, 226, 350
LmnI GCTCC 2 cut(s) 129, 388
Lsp1109I GCAGC 2 cut(s) 52, 379
MaeI CTAG 1 cut(s) 308
MaeII ACGT 2 cut(s) 71, 399
MaeIII GTNAC 2 cut(s) 214, 293
MalI GATC 3 cut(s) 196, 228, 352
MboI GATC 3 cut(s) 194, 226, 350
MboII GAAGA 1 cut(s) 76
MluCI AATT 2 cut(s) 49, 525
MlyI GAGTC 2 cut(s) 227, 415
MmeI TCCRAC 1 cut(s) 70
MnlI CCTC 6 cut(s) 86, 154, 327, 377, 435, 471
MroXI GAANNNNTTC 1 cut(s) 83
MseI TTAA 1 cut(s) 547
MspA1I CMGCKG 1 cut(s) 43
MspI CCGG 2 cut(s) 339, 447
MspR9I CCNGG 6 cut(s) 103, 339, 340, 411, 447, 448
MvaI CCWGG 2 cut(s) 103, 411
MwoI GCNNNNNNNGC 3 cut(s) 245, 318, 389
NciI CCSGG 4 cut(s) 339, 340, 447, 448
NdeI CATATG 1 cut(s) 481
NdeII GATC 3 cut(s) 194, 226, 350
NlaIII CATG 1 cut(s) 437
NlaIV GGNNCC 1 cut(s) 258
NmuCI GTSAC 1 cut(s) 214
PaeR7I CTCGAG 1 cut(s) 158
PcsI WCGNNNNNNNCGW 3 cut(s) 74, 165, 174
PdmI GAANNNNTTC 1 cut(s) 83
PfeI GAWTC 1 cut(s) 25
PkrI GCNGC 5 cut(s) 42, 131, 281, 314, 394
PleI GAGTC 2 cut(s) 227, 414
PpsI GAGTC 2 cut(s) 227, 414
Ppu21I YACGTR 1 cut(s) 400
PshAI GACNNNNGTC 1 cut(s) 80
Psp6I CCWGG 2 cut(s) 101, 409
PspGI CCWGG 2 cut(s) 101, 409
PspN4I GGNNCC 1 cut(s) 258
PspPI GGNCC 3 cut(s) 246, 256, 485
PspXI VCTCGAGB 1 cut(s) 158
PstNI CAGNNNCTG 1 cut(s) 43
PvuII CAGCTG 1 cut(s) 43
RsaI GTAC 3 cut(s) 146, 473, 521
RsaNI GTAC 3 cut(s) 145, 472, 520
SaqAI TTAA 1 cut(s) 547
SatI GCNGC 5 cut(s) 41, 130, 280, 313, 393
Sau3AI GATC 3 cut(s) 194, 226, 350
Sau96I GGNCC 3 cut(s) 246, 256, 485
SchI GAGTC 2 cut(s) 227, 415
ScrFI CCNGG 6 cut(s) 103, 339, 340, 411, 447, 448
SetI ASST 9 cut(s) 45, 74, 84, 300, 385, 394, 402, 490, 510
Sfr274I CTCGAG 1 cut(s) 158
SinI GGWCC 2 cut(s) 256, 485
SlaI CTCGAG 1 cut(s) 158
SmaI CCCGGG 2 cut(s) 340, 448
SmlI CTYRAG 1 cut(s) 158
SmoI CTYRAG 1 cut(s) 158
Sse9I AATT 2 cut(s) 49, 525
SsiI CCGC 6 cut(s) 127, 130, 189, 254, 280, 313
SspI AATATT 1 cut(s) 514
SspMI CTAG 1 cut(s) 308
StyD4I CCNGG 6 cut(s) 101, 337, 338, 409, 445, 446
TaaI ACNGT 1 cut(s) 293
TaiI ACGT 2 cut(s) 74, 402
TaqI TCGA 2 cut(s) 138, 159
TaqII GACCGA 1 cut(s) 359
TasI AATT 2 cut(s) 49, 525
TatI WGTACW 1 cut(s) 519
TauI GCSGC 3 cut(s) 132, 282, 315
TfiI GAWTC 1 cut(s) 25
Tru1I TTAA 1 cut(s) 547
Tru9I TTAA 1 cut(s) 547
TseFI GTSAC 1 cut(s) 214
TseI GCWGC 2 cut(s) 40, 392
Tsp45I GTSAC 1 cut(s) 214
TspMI CCCGGG 2 cut(s) 338, 446
VpaK11BI GGWCC 2 cut(s) 256, 485
XhoI CTCGAG 1 cut(s) 158
XmaI CCCGGG 2 cut(s) 338, 446
XmiI GTMKAC 1 cut(s) 498
XmnI GAANNNNTTC 1 cut(s) 83
XspI CTAG 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.