pycom02g08730

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0001423
Physical Location & Seq
Forward (+)
6027687 .. 6029917
2231 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g08730.2

Sequence Viewer

Length: 843 bp
ATGGCTTACCAGCAGCAACAACAGCAAGGAGGGGCTCAGCTGTTCAATTCCCCGTTCGGGGACACGACGTTGACGAAGGTGTTCGTGGGGGGATTGGCCTGGGAGACCCAGAGCGACACTCTACGACGTCACTTCGAGCAGTTCGGCGACATCCTCGAGGCTGTCGTTATCACCGATAAGAACACCGGCCGATCCAAAGGCTATGGCTTTGTCACATTTCGTGATCCTGAATCTGCAACAAGGGCTTGCTTGGATCCCAATCCTGTGATCGATGGCCGCAGAGCTAACTGCAATCTTGCTTCTCTGGGTCGTCCCCGCCAACCTTTCCTTTTTCATGGGCAAGTGAGATCACCAGCTCCAATCCTCGGGCGCGTGCAGCCGCCTAGAGCTGCTTACATGGGGAGCCCCCACCCTGCTTACCACCACCCTATTCCTCATGGTTACCAGCCCGGGTTTGTGTACCCGTCTTATGGGTACACAGGATATGGACCTGAATTTGTCTACCCACAGGGTGCCTACAGTCCTTACATGACTCAGCAGCAATACCTTCAGATATATGGGGTACCAGGCACAGTTAACCCTGGCGTATATTCATATGGACAATTCGGTCAGTCACTCCCTGGAAACCAGGGATATGCAACAGTTCAAAACTATGGAGTTCCAGGTCATCATGTAATGCAATTCAGTGGGGCCAATGTCGGTGCAGCATCCCCAGCTGCCATTCCAACGATTCAAACACCATATCCTGCAGGTATAGTTGCACCGGCTCCAGGACAGACGCAGTATATGCTTCCTACTAATTCTCCTCAATTCACCAGTGGTTCCGATCAAACTGCAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

281

Amino Acids

30.27

Weight (kDa)

8.45

Isoelectric Point (pI)

52.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 606
AatII GACGTC 1 cut(s) 130
AbsI CCTCGAGG 1 cut(s) 155
Acc36I ACCTGC 2 cut(s) 740, 827
Acc65I GGTACC 1 cut(s) 562
AccB1I GGYRCC 2 cut(s) 512, 562
AccI GTMKAC 1 cut(s) 501
AccII CGCG 1 cut(s) 372
AciI CCGC 3 cut(s) 277, 316, 380
AclWI GGATC 4 cut(s) 186, 218, 248, 261
AcoI YGGCCR 2 cut(s) 187, 274
AcsI RAATTY 1 cut(s) 494
AcuI CTGAAG 1 cut(s) 533
AcyI GRCGYC 1 cut(s) 127
AdeI CACNNNGTG 1 cut(s) 512
AfaI GTAC 3 cut(s) 461, 476, 564
AfiI CCNNNNNNNGG 5 cut(s) 57, 58, 365, 470, 770
AgsI TTSAA 3 cut(s) 46, 647, 734
AjnI CCWGG 7 cut(s) 98, 565, 580, 619, 627, 661, 769
AluBI AGCT 5 cut(s) 40, 284, 356, 389, 716
AluI AGCT 5 cut(s) 40, 284, 356, 389, 716
Alw26I GTCTC 1 cut(s) 98
AlwI GGATC 4 cut(s) 186, 218, 248, 261
Ama87I CYCGRG 3 cut(s) 155, 365, 449
AoxI GGCC 4 cut(s) 96, 187, 274, 690
ApeKI GCWGC 6 cut(s) 13, 376, 389, 538, 704, 716
ApoI RAATTY 1 cut(s) 494
Asp700I GAANNNNTTC 1 cut(s) 80
Asp718I GGTACC 1 cut(s) 562
AspLEI GCGC 1 cut(s) 372
AspS9I GGNCC 2 cut(s) 488, 690
AsuC2I CCSGG 2 cut(s) 450, 451
AsuHPI GGTGA 3 cut(s) 163, 342, 805
AvaI CYCGRG 3 cut(s) 155, 365, 449
AvaII GGWCC 1 cut(s) 488
BamHI GGATCC 1 cut(s) 253
BanI GGYRCC 2 cut(s) 512, 562
BanII GRGCYC 2 cut(s) 37, 407
BbvI GCAGC 6 cut(s) 25, 376, 388, 550, 703, 716
BccI CCATC 1 cut(s) 266
BcgI CGANNNNNNTGC 1 cut(s) 815
BciT130I CCWGG 7 cut(s) 100, 567, 582, 621, 629, 663, 771
BcnI CCSGG 2 cut(s) 450, 451
BcoDI GTCTC 1 cut(s) 98
BfaI CTAG 1 cut(s) 384
BfmI CTRYAG 3 cut(s) 517, 747, 834
BfuAI ACCTGC 2 cut(s) 740, 827
BisI GCNGC 8 cut(s) 14, 277, 377, 380, 390, 539, 705, 717
BlpI GCTNAGC 1 cut(s) 36
BlsI GCNGC 8 cut(s) 15, 278, 378, 381, 391, 540, 706, 718
Bme1390I CCNGG 9 cut(s) 100, 450, 451, 567, 582, 621, 629, 663, 771
Bme18I GGWCC 1 cut(s) 488
BmeT110I CYCGRG 3 cut(s) 155, 365, 449
BmgT120I GGNCC 2 cut(s) 488, 690
BmiI GGNNCC 7 cut(s) 255, 404, 514, 564, 691, 768, 823
BmrFI CCNGG 9 cut(s) 100, 450, 451, 567, 582, 621, 629, 663, 771
BmsI GCATC 1 cut(s) 716
BplI GAGNNNNNCTC 2 cut(s) 103, 135
BpmI CTGGAG 1 cut(s) 753
Bpu1102I GCTNAGC 1 cut(s) 36
BpuMI CCSGG 2 cut(s) 450, 451
Bsa29I ATCGAT 1 cut(s) 270
BsaBI GATNNNNATC 1 cut(s) 258
BsaHI GRCGYC 1 cut(s) 127
BsaI GGTCTC 1 cut(s) 98
BsaJI CCNNGG 6 cut(s) 99, 364, 449, 580, 619, 628
BsaXI ACNNNNNCTCC 2 cut(s) 787, 817
Bsc4I CCNNNNNNNGG 5 cut(s) 57, 58, 365, 470, 770
Bse118I RCCGGY 2 cut(s) 185, 763
Bse1I ACTGG 1 cut(s) 816
Bse8I GATNNNNATC 1 cut(s) 258
BseBI CCWGG 7 cut(s) 100, 567, 582, 621, 629, 663, 771
BseCI ATCGAT 1 cut(s) 270
BseDI CCNNGG 6 cut(s) 99, 364, 449, 580, 619, 628
BseGI GGATG 2 cut(s) 150, 707
BseJI GATNNNNATC 1 cut(s) 258
BseLI CCNNNNNNNGG 5 cut(s) 57, 58, 365, 470, 770
BseMII CTCAG 2 cut(s) 50, 548
BseNI ACTGG 1 cut(s) 816
BseRI GAGGAG 1 cut(s) 795
BseX3I CGGCCG 1 cut(s) 187
BseXI GCAGC 6 cut(s) 25, 376, 388, 550, 703, 716
BseYI CCCAGC 1 cut(s) 712
BsgI GTGCAG 2 cut(s) 395, 723
Bsh1236I CGCG 1 cut(s) 372
Bsh1285I CGRYCG 1 cut(s) 190
BshFI GGCC 4 cut(s) 98, 189, 276, 692
BshNI GGYRCC 2 cut(s) 512, 562
BshVI ATCGAT 1 cut(s) 270
BsiEI CGRYCG 1 cut(s) 190
BsiHKCI CYCGRG 3 cut(s) 155, 365, 449
BsiSI CCGG 3 cut(s) 186, 450, 764
BslFI GGGAC 2 cut(s) 74, 297
BslI CCNNNNNNNGG 5 cut(s) 57, 58, 365, 470, 770
BsmAI GTCTC 1 cut(s) 98
BsmFI GGGAC 2 cut(s) 74, 297
BsnI GGCC 4 cut(s) 98, 189, 276, 692
Bso31I GGTCTC 1 cut(s) 98
BsoBI CYCGRG 3 cut(s) 155, 365, 449
Bsp1286I GDGCHC 2 cut(s) 37, 407
Bsp143I GATC 6 cut(s) 191, 223, 253, 267, 347, 826
Bsp1720I GCTNAGC 1 cut(s) 36
BspACI CCGC 3 cut(s) 277, 316, 380
BspANI GGCC 4 cut(s) 98, 189, 276, 692
BspCNI CTCAG 2 cut(s) 49, 547
BspDI ATCGAT 1 cut(s) 270
BspFNI CGCG 1 cut(s) 372
BspLI GGNNCC 7 cut(s) 255, 404, 514, 564, 691, 768, 823
BspMAI CTGCAG 2 cut(s) 751, 838
BspMI ACCTGC 2 cut(s) 740, 827
BspPI GGATC 4 cut(s) 186, 218, 248, 261
BspT107I GGYRCC 2 cut(s) 512, 562
BspTNI GGTCTC 1 cut(s) 98
BsrFI RCCGGY 2 cut(s) 185, 763
BsrI ACTGG 1 cut(s) 816
BssAI RCCGGY 2 cut(s) 185, 763
BssECI CCNNGG 6 cut(s) 99, 364, 449, 580, 619, 628
BssMI GATC 6 cut(s) 191, 223, 253, 267, 347, 826
BssNI GRCGYC 1 cut(s) 127
Bst2UI CCWGG 7 cut(s) 100, 567, 582, 621, 629, 663, 771
Bst4CI ACNGT 3 cut(s) 521, 574, 643
BstACI GRCGYC 1 cut(s) 127
BstAPI GCANNNNNTGC 1 cut(s) 787
BstC8I GCNNGC 2 cut(s) 247, 374
BstDEI CTNAG 2 cut(s) 36, 534
BstEII GGTNACC 1 cut(s) 440
BstF5I GGATG 2 cut(s) 150, 707
BstFNI CGCG 1 cut(s) 372
BstHHI GCGC 1 cut(s) 372
BstKTI GATC 6 cut(s) 194, 226, 256, 270, 350, 829
BstMAI GTCTC 1 cut(s) 98
BstMBI GATC 6 cut(s) 191, 223, 253, 267, 347, 826
BstMCI CGRYCG 1 cut(s) 190
BstMWI GCNNNNNNNGC 5 cut(s) 22, 242, 376, 713, 787
BstNI CCWGG 7 cut(s) 100, 567, 582, 621, 629, 663, 771
BstPI GGTNACC 1 cut(s) 440
BstSCI CCNGG 9 cut(s) 98, 448, 449, 565, 580, 619, 627, 661, 769
BstSFI CTRYAG 3 cut(s) 517, 747, 834
BstUI CGCG 1 cut(s) 372
BstV1I GCAGC 6 cut(s) 25, 376, 388, 550, 703, 716
BstX2I RGATCY 1 cut(s) 253
BstYI RGATCY 1 cut(s) 253
BstZI CGGCCG 1 cut(s) 187
Bsu15I ATCGAT 1 cut(s) 270
BsuRI GGCC 4 cut(s) 98, 189, 276, 692
BsuTUI ATCGAT 1 cut(s) 270
BtsCI GGATG 2 cut(s) 150, 707
BtsIMutI CAGTG 2 cut(s) 691, 823
BveI ACCTGC 2 cut(s) 740, 827
Cac8I GCNNGC 2 cut(s) 247, 374
CfoI GCGC 1 cut(s) 372
Cfr10I RCCGGY 2 cut(s) 185, 763
Cfr13I GGNCC 2 cut(s) 488, 690
Cfr9I CCCGGG 1 cut(s) 449
ClaI ATCGAT 1 cut(s) 270
CseI GACGC 1 cut(s) 787
Csp6I GTAC 3 cut(s) 460, 475, 563
CviAII CATG 5 cut(s) 335, 397, 437, 529, 671
CviQI GTAC 3 cut(s) 460, 475, 563
DdeI CTNAG 2 cut(s) 36, 534
DpnI GATC 6 cut(s) 193, 225, 255, 269, 349, 828
DpnII GATC 6 cut(s) 191, 223, 253, 267, 347, 826
DraIII CACNNNGTG 1 cut(s) 512
DrdI GACNNNNNNGTC 1 cut(s) 606
DseDI GACNNNNNNGTC 1 cut(s) 606
EaeI YGGCCR 2 cut(s) 187, 274
EagI CGGCCG 1 cut(s) 187
EclXI CGGCCG 1 cut(s) 187
Eco24I GRGCYC 2 cut(s) 37, 407
Eco31I GGTCTC 1 cut(s) 98
Eco47I GGWCC 1 cut(s) 488
Eco52I CGGCCG 1 cut(s) 187
Eco57I CTGAAG 1 cut(s) 533
Eco88I CYCGRG 3 cut(s) 155, 365, 449
Eco91I GGTNACC 1 cut(s) 440
EcoO65I GGTNACC 1 cut(s) 440
EcoRII CCWGG 7 cut(s) 98, 565, 580, 619, 627, 661, 769
EcoT38I GRGCYC 2 cut(s) 37, 407
FaeI CATG 5 cut(s) 338, 400, 440, 532, 674
FaqI GGGAC 2 cut(s) 74, 297
FatI CATG 5 cut(s) 334, 396, 436, 528, 670
FauI CCCGC 1 cut(s) 323
FauNDI CATATG 1 cut(s) 595
FblI GTMKAC 1 cut(s) 501
Fnu4HI GCNGC 8 cut(s) 14, 277, 377, 380, 390, 539, 705, 717
FokI GGATG 2 cut(s) 137, 694
FriOI GRGCYC 2 cut(s) 37, 407
Fsp4HI GCNGC 8 cut(s) 14, 277, 377, 380, 390, 539, 705, 717
FspBI CTAG 1 cut(s) 384
GlaI GCGC 1 cut(s) 371
GluI GCNGC 8 cut(s) 14, 277, 377, 380, 390, 539, 705, 717
GsaI CCCAGC 1 cut(s) 716
GsuI CTGGAG 1 cut(s) 753
HaeIII GGCC 4 cut(s) 98, 189, 276, 692
HapII CCGG 3 cut(s) 186, 450, 764
HgaI GACGC 1 cut(s) 787
HhaI GCGC 1 cut(s) 372
Hin1I GRCGYC 1 cut(s) 127
Hin1II CATG 5 cut(s) 338, 400, 440, 532, 674
Hin6I GCGC 1 cut(s) 370
HinP1I GCGC 1 cut(s) 370
HincII GTYRAC 2 cut(s) 72, 577
HindII GTYRAC 2 cut(s) 72, 577
HinfI GANTC 3 cut(s) 230, 532, 730
HpaI GTTAAC 1 cut(s) 577
HpaII CCGG 3 cut(s) 186, 450, 764
HphI GGTGA 3 cut(s) 163, 342, 805
Hpy166II GTNNAC 5 cut(s) 72, 460, 477, 502, 577
Hpy188I TCNGA 2 cut(s) 552, 826
Hpy188III TCNNGA 2 cut(s) 221, 227
Hpy8I GTNNAC 5 cut(s) 72, 460, 477, 502, 577
Hpy99I CGWCG 2 cut(s) 70, 129
HpyAV CCTTC 2 cut(s) 70, 557
HpyCH4III ACNGT 3 cut(s) 521, 574, 643
HpyCH4IV ACGT 2 cut(s) 68, 127
HpyCH4V TGCA 9 cut(s) 236, 291, 376, 638, 679, 704, 749, 761, 836
HpyF10VI GCNNNNNNNGC 5 cut(s) 22, 242, 376, 713, 787
HpyF3I CTNAG 2 cut(s) 36, 534
HpySE526I ACGT 2 cut(s) 68, 127
Hsp92I GRCGYC 1 cut(s) 127
Hsp92II CATG 5 cut(s) 338, 400, 440, 532, 674
HspAI GCGC 1 cut(s) 370
KpnI GGTACC 1 cut(s) 566
KspAI GTTAAC 1 cut(s) 577
Kzo9I GATC 6 cut(s) 191, 223, 253, 267, 347, 826
LmnI GCTCC 3 cut(s) 361, 402, 772
Lsp1109I GCAGC 6 cut(s) 25, 376, 388, 550, 703, 716
LweI GCATC 1 cut(s) 716
MaeI CTAG 1 cut(s) 384
MaeII ACGT 2 cut(s) 68, 127
MaeIII GTNAC 4 cut(s) 128, 211, 440, 612
MalI GATC 6 cut(s) 193, 225, 255, 269, 349, 828
MboI GATC 6 cut(s) 191, 223, 253, 267, 347, 826
MflI RGATCY 1 cut(s) 253
MhlI GDGCHC 2 cut(s) 37, 407
MluCI AATT 6 cut(s) 46, 494, 602, 680, 799, 809
MlyI GAGTC 1 cut(s) 526
MmeI TCCRAC 1 cut(s) 749
MnlI CCTC 6 cut(s) 23, 151, 164, 374, 444, 816
MroXI GAANNNNTTC 1 cut(s) 80
MseI TTAA 1 cut(s) 576
MspA1I CMGCKG 2 cut(s) 40, 716
MspI CCGG 3 cut(s) 186, 450, 764
MspR9I CCNGG 9 cut(s) 100, 450, 451, 567, 582, 621, 629, 663, 771
MvaI CCWGG 7 cut(s) 100, 567, 582, 621, 629, 663, 771
MvnI CGCG 1 cut(s) 372
MwoI GCNNNNNNNGC 5 cut(s) 22, 242, 376, 713, 787
NciI CCSGG 2 cut(s) 450, 451
NdeI CATATG 1 cut(s) 595
NdeII GATC 6 cut(s) 191, 223, 253, 267, 347, 826
NlaIII CATG 5 cut(s) 338, 400, 440, 532, 674
NlaIV GGNNCC 7 cut(s) 255, 404, 514, 564, 691, 768, 823
NmuCI GTSAC 3 cut(s) 128, 211, 612
PaeR7I CTCGAG 1 cut(s) 155
PcsI WCGNNNNNNNCGW 3 cut(s) 71, 162, 171
PdmI GAANNNNTTC 1 cut(s) 80
PfeI GAWTC 2 cut(s) 230, 730
PfoI TCCNGGA 1 cut(s) 769
PkrI GCNGC 8 cut(s) 15, 278, 378, 381, 391, 540, 706, 718
PleI GAGTC 1 cut(s) 526
PpsI GAGTC 1 cut(s) 526
Psp6I CCWGG 7 cut(s) 98, 565, 580, 619, 627, 661, 769
PspEI GGTNACC 1 cut(s) 440
PspFI CCCAGC 1 cut(s) 712
PspGI CCWGG 7 cut(s) 98, 565, 580, 619, 627, 661, 769
PspN4I GGNNCC 7 cut(s) 255, 404, 514, 564, 691, 768, 823
PspPI GGNCC 2 cut(s) 488, 690
PspXI VCTCGAGB 1 cut(s) 155
PstI CTGCAG 2 cut(s) 751, 838
PsuI RGATCY 1 cut(s) 253
PvuII CAGCTG 2 cut(s) 40, 716
RsaI GTAC 3 cut(s) 461, 476, 564
RsaNI GTAC 3 cut(s) 460, 475, 563
SaqAI TTAA 1 cut(s) 576
SatI GCNGC 8 cut(s) 14, 277, 377, 380, 390, 539, 705, 717
Sau3AI GATC 6 cut(s) 191, 223, 253, 267, 347, 826
Sau96I GGNCC 2 cut(s) 488, 690
SbfI CCTGCAGG 1 cut(s) 751
SchI GAGTC 1 cut(s) 526
ScrFI CCNGG 9 cut(s) 100, 450, 451, 567, 582, 621, 629, 663, 771
SdaI CCTGCAGG 1 cut(s) 751
SduI GDGCHC 2 cut(s) 37, 407
SfaNI GCATC 1 cut(s) 716
SfcI CTRYAG 3 cut(s) 517, 747, 834
Sfr274I CTCGAG 1 cut(s) 155
SinI GGWCC 1 cut(s) 488
SlaI CTCGAG 1 cut(s) 155
SmaI CCCGGG 1 cut(s) 451
SmlI CTYRAG 1 cut(s) 155
SmoI CTYRAG 1 cut(s) 155
Sse8387I CCTGCAGG 1 cut(s) 751
Sse9I AATT 6 cut(s) 46, 494, 602, 680, 799, 809
SsiI CCGC 3 cut(s) 277, 316, 380
SspMI CTAG 1 cut(s) 384
StyD4I CCNGG 9 cut(s) 98, 448, 449, 565, 580, 619, 627, 661, 769
TaaI ACNGT 3 cut(s) 521, 574, 643
TaiI ACGT 2 cut(s) 71, 130
TaqI TCGA 3 cut(s) 135, 156, 270
TaqII GACCGA 1 cut(s) 596
TasI AATT 6 cut(s) 46, 494, 602, 680, 799, 809
TauI GCSGC 2 cut(s) 279, 382
TfiI GAWTC 2 cut(s) 230, 730
Tru1I TTAA 1 cut(s) 576
Tru9I TTAA 1 cut(s) 576
TscAI CASTG 2 cut(s) 691, 823
TseFI GTSAC 3 cut(s) 128, 211, 612
TseI GCWGC 6 cut(s) 13, 376, 389, 538, 704, 716
Tsp45I GTSAC 3 cut(s) 128, 211, 612
TspDTI ATGAA 2 cut(s) 323, 582
TspMI CCCGGG 1 cut(s) 449
TspRI CASTG 2 cut(s) 691, 823
VpaK11BI GGWCC 1 cut(s) 488
XapI RAATTY 1 cut(s) 494
XhoI CTCGAG 1 cut(s) 155
XmaI CCCGGG 1 cut(s) 449
XmiI GTMKAC 1 cut(s) 501
XmnI GAANNNNTTC 1 cut(s) 80
XspI CTAG 1 cut(s) 384
ZraI GACGTC 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.