MD02G1108800.v1.1

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0001423
Physical Location & Seq
Forward (+)
8759014 .. 8762921
3908 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1108800.v1.1.491

Sequence Viewer

Length: 819 bp
ATGGCTTACCAGCAGCAACAACAGCAAGGAGGGGCTCAGCTGTTCAATTCCCCGTTCGGGGACACGACGTTGACGAAGGTGTTCGTGGGGGGATTGGCCTGGGAGACCCAGAGCGACACTCTACGACGTCACTTCGAGCAGTTCGGCGAAATCCTCGAGGCTGTCGTCATCACCGATAAGAACACCGGCCGATCCAAAGGCTATGGCTTTGTCACATTTCGTGATCCTGAATCTGCAAGAAGGGCTTGCTTGGATCCCAATCCTGTGATCGATGGCCGCAGAGCTAACTGCAATCTTGCTTCTCTGGGTCGTCCCCGCCAACCTTTCCTTTTTCATGGGCAAGTGAGATCACCAGCTCCAATCCTCGGCCGCGTGCAGCCGCCTAGAGCTGCTTACATGGGGAGCCCCAACCCTGCTTACCACCACCCTATTCCTCATGGTTACCAGCCCGGGTTCGTGTACCCGTCTTATGGGTACACAGGATATGGACCTGAATTTGTCTACCCACAGGGTGCCTACAGTCCTTACATGACTCAGCAGCAATACCTTCAGATATATGGGGTACCAGGCACAGTCAACCCTGGCGTATATTCATATGGACAATTGGGTCAGTCACTCCCTGGAAGCCATGGATATGCAACAGTTCAAAACTATGGAGTTCCAGGTCATCATGTAATGCAATTCGGTGGGGCCAATGTCGGTGCAGCATCCCCAGCTGCCATTCCAACGATTCAAACACCATATCCTGCAGGCAACATTCTCTTCCTAAAACCCTTCTTCCCTTTTACAAGAATGATAACCTTCATTGCAATTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

273

Amino Acids

29.86

Weight (kDa)

9.26

Isoelectric Point (pI)

55.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 27 - 82 2.6e-18 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 606
AatII GACGTC 1 cut(s) 130
AbsI CCTCGAGG 1 cut(s) 155
Acc65I GGTACC 1 cut(s) 562
AccB1I GGYRCC 2 cut(s) 512, 562
AccI GTMKAC 1 cut(s) 501
AccII CGCG 1 cut(s) 372
AciI CCGC 4 cut(s) 277, 316, 370, 380
AclWI GGATC 4 cut(s) 186, 218, 248, 261
AcoI YGGCCR 3 cut(s) 187, 274, 367
AcsI RAATTY 1 cut(s) 494
AcuI CTGAAG 1 cut(s) 533
AcyI GRCGYC 1 cut(s) 127
AdeI CACNNNGTG 1 cut(s) 512
AfaI GTAC 3 cut(s) 461, 476, 564
AfiI CCNNNNNNNGG 4 cut(s) 57, 58, 365, 470
AgsI TTSAA 3 cut(s) 46, 647, 734
AjnI CCWGG 5 cut(s) 98, 565, 580, 619, 661
AluBI AGCT 5 cut(s) 40, 284, 356, 389, 716
AluI AGCT 5 cut(s) 40, 284, 356, 389, 716
Alw26I GTCTC 1 cut(s) 98
AlwI GGATC 4 cut(s) 186, 218, 248, 261
Ama87I CYCGRG 2 cut(s) 155, 449
AoxI GGCC 5 cut(s) 96, 187, 274, 367, 690
ApeKI GCWGC 6 cut(s) 13, 376, 389, 538, 704, 716
ApoI RAATTY 1 cut(s) 494
Asp700I GAANNNNTTC 1 cut(s) 80
Asp718I GGTACC 1 cut(s) 562
AspS9I GGNCC 2 cut(s) 488, 690
AsuC2I CCSGG 2 cut(s) 450, 451
AsuHPI GGTGA 2 cut(s) 163, 342
AvaI CYCGRG 2 cut(s) 155, 449
AvaII GGWCC 1 cut(s) 488
BamHI GGATCC 1 cut(s) 253
BanI GGYRCC 2 cut(s) 512, 562
BanII GRGCYC 2 cut(s) 37, 407
BbvI GCAGC 6 cut(s) 25, 376, 388, 550, 703, 716
BccI CCATC 1 cut(s) 266
BciT130I CCWGG 5 cut(s) 100, 567, 582, 621, 663
BcnI CCSGG 2 cut(s) 450, 451
BcoDI GTCTC 1 cut(s) 98
BfaI CTAG 1 cut(s) 384
BfmI CTRYAG 2 cut(s) 517, 747
BisI GCNGC 9 cut(s) 14, 277, 370, 377, 380, 390, 539, 705, 717
BlpI GCTNAGC 1 cut(s) 36
BlsI GCNGC 9 cut(s) 15, 278, 371, 378, 381, 391, 540, 706, 718
Bme1390I CCNGG 7 cut(s) 100, 450, 451, 567, 582, 621, 663
Bme18I GGWCC 1 cut(s) 488
BmeT110I CYCGRG 2 cut(s) 155, 449
BmgT120I GGNCC 2 cut(s) 488, 690
BmiI GGNNCC 5 cut(s) 255, 404, 514, 564, 691
BmrFI CCNGG 7 cut(s) 100, 450, 451, 567, 582, 621, 663
BmsI GCATC 1 cut(s) 716
BplI GAGNNNNNCTC 2 cut(s) 103, 135
Bpu1102I GCTNAGC 1 cut(s) 36
BpuMI CCSGG 2 cut(s) 450, 451
Bsa29I ATCGAT 1 cut(s) 270
BsaBI GATNNNNATC 1 cut(s) 258
BsaHI GRCGYC 1 cut(s) 127
BsaI GGTCTC 1 cut(s) 98
BsaJI CCNNGG 6 cut(s) 99, 364, 449, 580, 619, 628
Bsc4I CCNNNNNNNGG 4 cut(s) 57, 58, 365, 470
Bse118I RCCGGY 1 cut(s) 185
Bse3DI GCAATG 1 cut(s) 804
Bse8I GATNNNNATC 1 cut(s) 258
BseBI CCWGG 5 cut(s) 100, 567, 582, 621, 663
BseCI ATCGAT 1 cut(s) 270
BseDI CCNNGG 6 cut(s) 99, 364, 449, 580, 619, 628
BseGI GGATG 1 cut(s) 707
BseJI GATNNNNATC 1 cut(s) 258
BseLI CCNNNNNNNGG 4 cut(s) 57, 58, 365, 470
BseMI GCAATG 1 cut(s) 804
BseMII CTCAG 2 cut(s) 50, 548
BseX3I CGGCCG 2 cut(s) 187, 367
BseXI GCAGC 6 cut(s) 25, 376, 388, 550, 703, 716
BseYI CCCAGC 1 cut(s) 712
BsgI GTGCAG 2 cut(s) 395, 723
Bsh1236I CGCG 1 cut(s) 372
Bsh1285I CGRYCG 2 cut(s) 190, 370
BshFI GGCC 5 cut(s) 98, 189, 276, 369, 692
BshNI GGYRCC 2 cut(s) 512, 562
BshVI ATCGAT 1 cut(s) 270
BsiEI CGRYCG 2 cut(s) 190, 370
BsiHKCI CYCGRG 2 cut(s) 155, 449
BsiSI CCGG 2 cut(s) 186, 450
BslFI GGGAC 2 cut(s) 74, 297
BslI CCNNNNNNNGG 4 cut(s) 57, 58, 365, 470
BsmAI GTCTC 1 cut(s) 98
BsmFI GGGAC 2 cut(s) 74, 297
BsnI GGCC 5 cut(s) 98, 189, 276, 369, 692
Bso31I GGTCTC 1 cut(s) 98
BsoBI CYCGRG 2 cut(s) 155, 449
Bsp1286I GDGCHC 2 cut(s) 37, 407
Bsp143I GATC 5 cut(s) 191, 223, 253, 267, 347
Bsp1720I GCTNAGC 1 cut(s) 36
Bsp19I CCATGG 1 cut(s) 628
BspACI CCGC 4 cut(s) 277, 316, 370, 380
BspANI GGCC 5 cut(s) 98, 189, 276, 369, 692
BspCNI CTCAG 2 cut(s) 49, 547
BspDI ATCGAT 1 cut(s) 270
BspFNI CGCG 1 cut(s) 372
BspLI GGNNCC 5 cut(s) 255, 404, 514, 564, 691
BspMAI CTGCAG 1 cut(s) 751
BspPI GGATC 4 cut(s) 186, 218, 248, 261
BspT107I GGYRCC 2 cut(s) 512, 562
BspTNI GGTCTC 1 cut(s) 98
BsrDI GCAATG 1 cut(s) 804
BsrFI RCCGGY 1 cut(s) 185
BssAI RCCGGY 1 cut(s) 185
BssECI CCNNGG 6 cut(s) 99, 364, 449, 580, 619, 628
BssMI GATC 5 cut(s) 191, 223, 253, 267, 347
BssNI GRCGYC 1 cut(s) 127
BssT1I CCWWGG 1 cut(s) 628
Bst2UI CCWGG 5 cut(s) 100, 567, 582, 621, 663
Bst4CI ACNGT 3 cut(s) 521, 574, 643
Bst6I CTCTTC 1 cut(s) 767
BstACI GRCGYC 1 cut(s) 127
BstC8I GCNNGC 3 cut(s) 247, 374, 751
BstDEI CTNAG 2 cut(s) 36, 534
BstDSI CCRYGG 1 cut(s) 628
BstEII GGTNACC 1 cut(s) 440
BstF5I GGATG 1 cut(s) 707
BstFNI CGCG 1 cut(s) 372
BstKTI GATC 5 cut(s) 194, 226, 256, 270, 350
BstMAI GTCTC 1 cut(s) 98
BstMBI GATC 5 cut(s) 191, 223, 253, 267, 347
BstMCI CGRYCG 2 cut(s) 190, 370
BstMWI GCNNNNNNNGC 3 cut(s) 22, 242, 713
BstNI CCWGG 5 cut(s) 100, 567, 582, 621, 663
BstPI GGTNACC 1 cut(s) 440
BstSCI CCNGG 7 cut(s) 98, 448, 449, 565, 580, 619, 661
BstSFI CTRYAG 2 cut(s) 517, 747
BstUI CGCG 1 cut(s) 372
BstV1I GCAGC 6 cut(s) 25, 376, 388, 550, 703, 716
BstX2I RGATCY 1 cut(s) 253
BstYI RGATCY 1 cut(s) 253
BstZI CGGCCG 2 cut(s) 187, 367
Bsu15I ATCGAT 1 cut(s) 270
BsuRI GGCC 5 cut(s) 98, 189, 276, 369, 692
BsuTUI ATCGAT 1 cut(s) 270
BtgI CCRYGG 1 cut(s) 628
BtsCI GGATG 1 cut(s) 707
Cac8I GCNNGC 3 cut(s) 247, 374, 751
Cfr10I RCCGGY 1 cut(s) 185
Cfr13I GGNCC 2 cut(s) 488, 690
Cfr9I CCCGGG 1 cut(s) 449
ClaI ATCGAT 1 cut(s) 270
Csp6I GTAC 3 cut(s) 460, 475, 563
CviAII CATG 6 cut(s) 335, 397, 437, 529, 629, 671
CviQI GTAC 3 cut(s) 460, 475, 563
DdeI CTNAG 2 cut(s) 36, 534
DpnI GATC 5 cut(s) 193, 225, 255, 269, 349
DpnII GATC 5 cut(s) 191, 223, 253, 267, 347
DraIII CACNNNGTG 1 cut(s) 512
DrdI GACNNNNNNGTC 1 cut(s) 606
DseDI GACNNNNNNGTC 1 cut(s) 606
EaeI YGGCCR 3 cut(s) 187, 274, 367
EagI CGGCCG 2 cut(s) 187, 367
Eam1104I CTCTTC 1 cut(s) 767
EarI CTCTTC 1 cut(s) 767
EclXI CGGCCG 2 cut(s) 187, 367
Eco130I CCWWGG 1 cut(s) 628
Eco24I GRGCYC 2 cut(s) 37, 407
Eco31I GGTCTC 1 cut(s) 98
Eco47I GGWCC 1 cut(s) 488
Eco52I CGGCCG 2 cut(s) 187, 367
Eco57I CTGAAG 1 cut(s) 533
Eco88I CYCGRG 2 cut(s) 155, 449
Eco91I GGTNACC 1 cut(s) 440
EcoO65I GGTNACC 1 cut(s) 440
EcoRII CCWGG 5 cut(s) 98, 565, 580, 619, 661
EcoT14I CCWWGG 1 cut(s) 628
EcoT38I GRGCYC 2 cut(s) 37, 407
ErhI CCWWGG 1 cut(s) 628
FaeI CATG 6 cut(s) 338, 400, 440, 532, 632, 674
FalI AAGNNNNNCTT 2 cut(s) 229, 261
FaqI GGGAC 2 cut(s) 74, 297
FatI CATG 6 cut(s) 334, 396, 436, 528, 628, 670
FauI CCCGC 1 cut(s) 323
FauNDI CATATG 1 cut(s) 595
FblI GTMKAC 1 cut(s) 501
Fnu4HI GCNGC 9 cut(s) 14, 277, 370, 377, 380, 390, 539, 705, 717
FokI GGATG 1 cut(s) 694
FriOI GRGCYC 2 cut(s) 37, 407
Fsp4HI GCNGC 9 cut(s) 14, 277, 370, 377, 380, 390, 539, 705, 717
FspBI CTAG 1 cut(s) 384
GluI GCNGC 9 cut(s) 14, 277, 370, 377, 380, 390, 539, 705, 717
GsaI CCCAGC 1 cut(s) 716
HaeIII GGCC 5 cut(s) 98, 189, 276, 369, 692
HapII CCGG 2 cut(s) 186, 450
Hin1I GRCGYC 1 cut(s) 127
Hin1II CATG 6 cut(s) 338, 400, 440, 532, 632, 674
HincII GTYRAC 2 cut(s) 72, 577
HindII GTYRAC 2 cut(s) 72, 577
HinfI GANTC 3 cut(s) 230, 532, 730
HpaII CCGG 2 cut(s) 186, 450
HphI GGTGA 2 cut(s) 163, 342
Hpy166II GTNNAC 5 cut(s) 72, 460, 477, 502, 577
Hpy188I TCNGA 1 cut(s) 552
Hpy188III TCNNGA 2 cut(s) 221, 227
Hpy8I GTNNAC 5 cut(s) 72, 460, 477, 502, 577
Hpy99I CGWCG 2 cut(s) 70, 129
HpyAV CCTTC 5 cut(s) 70, 234, 557, 784, 811
HpyCH4III ACNGT 3 cut(s) 521, 574, 643
HpyCH4IV ACGT 2 cut(s) 68, 127
HpyCH4V TGCA 8 cut(s) 236, 291, 376, 638, 679, 704, 749, 809
HpyF10VI GCNNNNNNNGC 3 cut(s) 22, 242, 713
HpyF3I CTNAG 2 cut(s) 36, 534
HpySE526I ACGT 2 cut(s) 68, 127
Hsp92I GRCGYC 1 cut(s) 127
Hsp92II CATG 6 cut(s) 338, 400, 440, 532, 632, 674
KpnI GGTACC 1 cut(s) 566
Kzo9I GATC 5 cut(s) 191, 223, 253, 267, 347
LmnI GCTCC 2 cut(s) 361, 402
Lsp1109I GCAGC 6 cut(s) 25, 376, 388, 550, 703, 716
LweI GCATC 1 cut(s) 716
MaeI CTAG 1 cut(s) 384
MaeII ACGT 2 cut(s) 68, 127
MaeIII GTNAC 4 cut(s) 128, 211, 440, 612
MalI GATC 5 cut(s) 193, 225, 255, 269, 349
MboI GATC 5 cut(s) 191, 223, 253, 267, 347
MboII GAAGA 2 cut(s) 754, 769
MfeI CAATTG 1 cut(s) 602
MflI RGATCY 1 cut(s) 253
MhlI GDGCHC 2 cut(s) 37, 407
MluCI AATT 5 cut(s) 46, 494, 602, 680, 810
MlyI GAGTC 1 cut(s) 526
MmeI TCCRAC 1 cut(s) 749
MnlI CCTC 5 cut(s) 23, 151, 164, 374, 444
MroXI GAANNNNTTC 1 cut(s) 80
MseI TTAA 1 cut(s) 817
MslI CAYNNNNRTG 1 cut(s) 633
MspA1I CMGCKG 2 cut(s) 40, 716
MspI CCGG 2 cut(s) 186, 450
MspR9I CCNGG 7 cut(s) 100, 450, 451, 567, 582, 621, 663
MunI CAATTG 1 cut(s) 602
MvaI CCWGG 5 cut(s) 100, 567, 582, 621, 663
MvnI CGCG 1 cut(s) 372
MwoI GCNNNNNNNGC 3 cut(s) 22, 242, 713
NciI CCSGG 2 cut(s) 450, 451
NcoI CCATGG 1 cut(s) 628
NdeI CATATG 1 cut(s) 595
NdeII GATC 5 cut(s) 191, 223, 253, 267, 347
NlaIII CATG 6 cut(s) 338, 400, 440, 532, 632, 674
NlaIV GGNNCC 5 cut(s) 255, 404, 514, 564, 691
NmeAIII GCCGAG 1 cut(s) 345
NmuCI GTSAC 3 cut(s) 128, 211, 612
PaeR7I CTCGAG 1 cut(s) 155
PcsI WCGNNNNNNNCGW 3 cut(s) 71, 162, 171
PdmI GAANNNNTTC 1 cut(s) 80
PfeI GAWTC 2 cut(s) 230, 730
PkrI GCNGC 9 cut(s) 15, 278, 371, 378, 381, 391, 540, 706, 718
PleI GAGTC 1 cut(s) 526
PpsI GAGTC 1 cut(s) 526
Psp6I CCWGG 5 cut(s) 98, 565, 580, 619, 661
PspEI GGTNACC 1 cut(s) 440
PspFI CCCAGC 1 cut(s) 712
PspGI CCWGG 5 cut(s) 98, 565, 580, 619, 661
PspN4I GGNNCC 5 cut(s) 255, 404, 514, 564, 691
PspPI GGNCC 2 cut(s) 488, 690
PspXI VCTCGAGB 1 cut(s) 155
PstI CTGCAG 1 cut(s) 751
PsuI RGATCY 1 cut(s) 253
PvuII CAGCTG 2 cut(s) 40, 716
RsaI GTAC 3 cut(s) 461, 476, 564
RsaNI GTAC 3 cut(s) 460, 475, 563
RseI CAYNNNNRTG 1 cut(s) 633
SaqAI TTAA 1 cut(s) 817
SatI GCNGC 9 cut(s) 14, 277, 370, 377, 380, 390, 539, 705, 717
Sau3AI GATC 5 cut(s) 191, 223, 253, 267, 347
Sau96I GGNCC 2 cut(s) 488, 690
SbfI CCTGCAGG 1 cut(s) 751
SchI GAGTC 1 cut(s) 526
ScrFI CCNGG 7 cut(s) 100, 450, 451, 567, 582, 621, 663
SdaI CCTGCAGG 1 cut(s) 751
SduI GDGCHC 2 cut(s) 37, 407
SfaNI GCATC 1 cut(s) 716
SfcI CTRYAG 2 cut(s) 517, 747
Sfr274I CTCGAG 1 cut(s) 155
SinI GGWCC 1 cut(s) 488
SlaI CTCGAG 1 cut(s) 155
SmaI CCCGGG 1 cut(s) 451
SmiMI CAYNNNNRTG 1 cut(s) 633
SmlI CTYRAG 1 cut(s) 155
SmoI CTYRAG 1 cut(s) 155
Sse8387I CCTGCAGG 1 cut(s) 751
Sse9I AATT 5 cut(s) 46, 494, 602, 680, 810
SsiI CCGC 4 cut(s) 277, 316, 370, 380
SspMI CTAG 1 cut(s) 384
StyD4I CCNGG 7 cut(s) 98, 448, 449, 565, 580, 619, 661
StyI CCWWGG 1 cut(s) 628
TaaI ACNGT 3 cut(s) 521, 574, 643
TaiI ACGT 2 cut(s) 71, 130
TaqI TCGA 3 cut(s) 135, 156, 270
TasI AATT 5 cut(s) 46, 494, 602, 680, 810
TauI GCSGC 3 cut(s) 279, 372, 382
TfiI GAWTC 2 cut(s) 230, 730
Tru1I TTAA 1 cut(s) 817
Tru9I TTAA 1 cut(s) 817
TseFI GTSAC 3 cut(s) 128, 211, 612
TseI GCWGC 6 cut(s) 13, 376, 389, 538, 704, 716
Tsp45I GTSAC 3 cut(s) 128, 211, 612
TspDTI ATGAA 3 cut(s) 323, 582, 793
TspMI CCCGGG 1 cut(s) 449
VpaK11BI GGWCC 1 cut(s) 488
XapI RAATTY 1 cut(s) 494
XhoI CTCGAG 1 cut(s) 155
XmaI CCCGGG 1 cut(s) 449
XmiI GTMKAC 1 cut(s) 501
XmnI GAANNNNTTC 1 cut(s) 80
XspI CTAG 1 cut(s) 384
ZraI GACGTC 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.