Rw2G008360

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0001423
Physical Location & Seq
Forward (+)
8303951 .. 8307811
3861 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G008360.1

Sequence Viewer

Length: 771 bp
ATGGCTTACCCACAACAACAACAGAATCAACAACAACAGCAGCTGTTCAATTCGCCGTTCGGGGACACGACGTTGACGAAGGTCTTCGTCGGAGGGCTGGCCTGGGAGACCCAGAGCGAGACGCTCCGCCGCCACTTCGAGCAGTACGGCGATATACTCGAGGCGGTCGTCATCACCGATAAGAACACCGCCCGATCCAAAGGCTATGGCTTTGTCAGGCAACTGAGATCACCAGCGCCAATCCTCGGTCGTCTGCAAGCTCCAAGAGCTGCTTACGTGGGGAGTCCTGGTTATCACCACCCTCTTTCTCATGCTTATCAGCCCGGGTTTGTTTACCCTTCTTATGGGTACACAGCATATGGACCTGAATATGTCTACCCACAGGGTGTCTATAGTCCGTACATGAATCAGCAATACCTTCAGATGTATGGTGTACCGGGGACAGTCAACCCTGGTGTATATCCTTATGGACAAGCGGGTCATTCTCTTTCCGGAAATCCTGCGTATACGGCGGTTCAAAGCTATGGAATTCCAGGCCATCATATAATGCAATTCACTGGGTCCAACGTCAGTGGAGCATCACCAGTTGCCCTTCCCACAATTCAAACACCATATCCTGCAGGTATAGCTGCACCAGCTCCAGGACAGGCACAACTTTTACTTCCTACTAATTCTCCTCAATTCACCAGCAGTTCTGATCAAACTTCATTGTTGAATATTGAATTTGTCTATTCAATTGGCGTTTATTCACTTCTCCTAGGGCTCTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

256

Amino Acids

27.84

Weight (kDa)

7.06

Isoelectric Point (pI)

56.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 28 - 73 1.1e-12 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 477
Acc36I ACCTGC 1 cut(s) 611
AccI GTMKAC 2 cut(s) 375, 506
AccIII TCCGGA 1 cut(s) 491
AciI CCGC 6 cut(s) 127, 130, 164, 189, 476, 512
AclWI GGATC 1 cut(s) 189
AcsI RAATTY 2 cut(s) 528, 722
AcuI CTGAAG 1 cut(s) 404
AdeI CACNNNGTG 1 cut(s) 386
AfaI GTAC 4 cut(s) 146, 350, 401, 435
AfiI CCNNNNNNNGG 3 cut(s) 245, 344, 641
AgsI TTSAA 6 cut(s) 49, 518, 605, 715, 722, 735
AjnI CCWGG 5 cut(s) 101, 286, 451, 532, 640
AluBI AGCT 6 cut(s) 43, 260, 269, 522, 629, 638
AluI AGCT 6 cut(s) 43, 260, 269, 522, 629, 638
Alw26I GTCTC 2 cut(s) 101, 113
AlwI GGATC 1 cut(s) 189
AlwNI CAGNNNCTG 1 cut(s) 43
Ama87I CYCGRG 2 cut(s) 158, 323
Aor13HI TCCGGA 1 cut(s) 491
AoxI GGCC 2 cut(s) 99, 535
ApeKI GCWGC 3 cut(s) 40, 269, 629
ApoI RAATTY 2 cut(s) 528, 722
Asp700I GAANNNNTTC 1 cut(s) 83
AspA2I CCTAGG 1 cut(s) 757
AspLEI GCGC 1 cut(s) 238
AspS9I GGNCC 2 cut(s) 362, 561
AsuC2I CCSGG 3 cut(s) 324, 325, 438
AsuHPI GGTGA 5 cut(s) 166, 222, 287, 573, 676
AvaI CYCGRG 2 cut(s) 158, 323
AvaII GGWCC 2 cut(s) 362, 561
AvrII CCTAGG 1 cut(s) 757
BanII GRGCYC 1 cut(s) 765
BbsI GAAGAC 1 cut(s) 76
BbvI GCAGC 3 cut(s) 52, 256, 616
BccI CCATC 1 cut(s) 546
BceAI ACGGC 3 cut(s) 40, 163, 525
BciT130I CCWGG 5 cut(s) 103, 288, 453, 534, 642
BclI TGATCA 1 cut(s) 697
BcnI CCSGG 3 cut(s) 324, 325, 438
BcoDI GTCTC 2 cut(s) 101, 113
BfaI CTAG 1 cut(s) 758
BfmI CTRYAG 2 cut(s) 391, 618
BfoI RGCGCY 1 cut(s) 239
BfuAI ACCTGC 1 cut(s) 611
BisI GCNGC 4 cut(s) 41, 130, 270, 630
BlnI CCTAGG 1 cut(s) 757
BlsI GCNGC 4 cut(s) 42, 131, 271, 631
Bme1390I CCNGG 8 cut(s) 103, 288, 324, 325, 438, 453, 534, 642
Bme18I GGWCC 2 cut(s) 362, 561
BmeT110I CYCGRG 2 cut(s) 158, 323
BmgT120I GGNCC 2 cut(s) 362, 561
BmiI GGNNCC 1 cut(s) 562
BmrFI CCNGG 8 cut(s) 103, 288, 324, 325, 438, 453, 534, 642
BmrI ACTGGG 1 cut(s) 567
BmsI GCATC 1 cut(s) 587
BmuI ACTGGG 1 cut(s) 567
BoxI GACNNNNGTC 1 cut(s) 80
BpiI GAAGAC 1 cut(s) 76
BpmI CTGGAG 1 cut(s) 624
BpuMI CCSGG 3 cut(s) 324, 325, 438
BsaAI YACGTR 1 cut(s) 277
BsaI GGTCTC 1 cut(s) 101
BsaJI CCNNGG 6 cut(s) 102, 244, 323, 437, 451, 757
BsaWI WCCGGW 1 cut(s) 491
BsaXI ACNNNNNCTCC 4 cut(s) 274, 304, 658, 688
Bsc4I CCNNNNNNNGG 3 cut(s) 245, 344, 641
Bse1I ACTGG 2 cut(s) 562, 584
BseAI TCCGGA 1 cut(s) 491
BseBI CCWGG 5 cut(s) 103, 288, 453, 534, 642
BseDI CCNNGG 6 cut(s) 102, 244, 323, 437, 451, 757
BseLI CCNNNNNNNGG 3 cut(s) 245, 344, 641
BseMII CTCAG 1 cut(s) 215
BseNI ACTGG 2 cut(s) 562, 584
BseRI GAGGAG 1 cut(s) 666
BseXI GCAGC 3 cut(s) 52, 256, 616
BsgI GTGCAG 1 cut(s) 615
Bsh1285I CGRYCG 2 cut(s) 168, 250
BshFI GGCC 2 cut(s) 101, 537
BsiEI CGRYCG 2 cut(s) 168, 250
BsiHKCI CYCGRG 2 cut(s) 158, 323
BsiSI CCGG 3 cut(s) 324, 437, 492
BslFI GGGAC 2 cut(s) 77, 454
BslI CCNNNNNNNGG 3 cut(s) 245, 344, 641
BsmAI GTCTC 2 cut(s) 101, 113
BsmBI CGTCTC 1 cut(s) 113
BsmFI GGGAC 2 cut(s) 77, 454
BsnI GGCC 2 cut(s) 101, 537
Bso31I GGTCTC 1 cut(s) 101
BsoBI CYCGRG 2 cut(s) 158, 323
Bsp1286I GDGCHC 1 cut(s) 765
Bsp13I TCCGGA 1 cut(s) 491
Bsp143I GATC 3 cut(s) 194, 227, 697
BspACI CCGC 6 cut(s) 127, 130, 164, 189, 476, 512
BspANI GGCC 2 cut(s) 101, 537
BspCNI CTCAG 1 cut(s) 216
BspEI TCCGGA 1 cut(s) 491
BspLI GGNNCC 1 cut(s) 562
BspMAI CTGCAG 1 cut(s) 622
BspMI ACCTGC 1 cut(s) 611
BspPI GGATC 1 cut(s) 189
BspTNI GGTCTC 1 cut(s) 101
BsrI ACTGG 2 cut(s) 562, 584
BssECI CCNNGG 6 cut(s) 102, 244, 323, 437, 451, 757
BssMI GATC 3 cut(s) 194, 227, 697
BssNAI GTATAC 1 cut(s) 507
BssT1I CCWWGG 1 cut(s) 757
Bst1107I GTATAC 1 cut(s) 507
Bst2UI CCWGG 5 cut(s) 103, 288, 453, 534, 642
Bst4CI ACNGT 1 cut(s) 445
BstBAI YACGTR 1 cut(s) 277
BstC8I GCNNGC 2 cut(s) 99, 258
BstDEI CTNAG 1 cut(s) 224
BstH2I RGCGCY 1 cut(s) 239
BstHHI GCGC 1 cut(s) 238
BstKTI GATC 3 cut(s) 197, 230, 700
BstMAI GTCTC 2 cut(s) 101, 113
BstMBI GATC 3 cut(s) 194, 227, 697
BstMCI CGRYCG 2 cut(s) 168, 250
BstMWI GCNNNNNNNGC 4 cut(s) 266, 509, 626, 635
BstNI CCWGG 5 cut(s) 103, 288, 453, 534, 642
BstPAI GACNNNNGTC 1 cut(s) 80
BstSCI CCNGG 8 cut(s) 101, 286, 322, 323, 436, 451, 532, 640
BstSFI CTRYAG 2 cut(s) 391, 618
BstV1I GCAGC 3 cut(s) 52, 256, 616
BstV2I GAAGAC 1 cut(s) 76
BstZ17I GTATAC 1 cut(s) 507
BsuRI GGCC 2 cut(s) 101, 537
BtsIMutI CAGTG 2 cut(s) 555, 577
BveI ACCTGC 1 cut(s) 611
Cac8I GCNNGC 2 cut(s) 99, 258
CaiI CAGNNNCTG 1 cut(s) 43
CfoI GCGC 1 cut(s) 238
Cfr13I GGNCC 2 cut(s) 362, 561
Cfr9I CCCGGG 1 cut(s) 323
CseI GACGC 1 cut(s) 130
Csp6I GTAC 4 cut(s) 145, 349, 400, 434
CspCI CAANNNNNGTGG 2 cut(s) 553, 588
CviAII CATG 2 cut(s) 311, 403
CviQI GTAC 4 cut(s) 145, 349, 400, 434
DdeI CTNAG 1 cut(s) 224
DpnI GATC 3 cut(s) 196, 229, 699
DpnII GATC 3 cut(s) 194, 227, 697
DraIII CACNNNGTG 1 cut(s) 386
DrdI GACNNNNNNGTC 1 cut(s) 477
DseDI GACNNNNNNGTC 1 cut(s) 477
EciI GGCGGA 1 cut(s) 116
Eco130I CCWWGG 1 cut(s) 757
Eco24I GRGCYC 1 cut(s) 765
Eco31I GGTCTC 1 cut(s) 101
Eco47I GGWCC 2 cut(s) 362, 561
Eco57I CTGAAG 1 cut(s) 404
Eco88I CYCGRG 2 cut(s) 158, 323
EcoRI GAATTC 1 cut(s) 528
EcoRII CCWGG 5 cut(s) 101, 286, 451, 532, 640
EcoT14I CCWWGG 1 cut(s) 757
EcoT38I GRGCYC 1 cut(s) 765
ErhI CCWWGG 1 cut(s) 757
Esp3I CGTCTC 1 cut(s) 113
FaeI CATG 2 cut(s) 314, 406
FalI AAGNNNNNCTT 2 cut(s) 256, 288
FaqI GGGAC 2 cut(s) 77, 454
FatI CATG 2 cut(s) 310, 402
FauI CCCGC 1 cut(s) 469
FauNDI CATATG 1 cut(s) 358
FbaI TGATCA 1 cut(s) 697
FblI GTMKAC 2 cut(s) 375, 506
Fnu4HI GCNGC 4 cut(s) 41, 130, 270, 630
FriOI GRGCYC 1 cut(s) 765
Fsp4HI GCNGC 4 cut(s) 41, 130, 270, 630
FspBI CTAG 1 cut(s) 758
GlaI GCGC 1 cut(s) 237
GluI GCNGC 4 cut(s) 41, 130, 270, 630
GsuI CTGGAG 1 cut(s) 624
HaeII RGCGCY 1 cut(s) 239
HaeIII GGCC 2 cut(s) 101, 537
HapII CCGG 3 cut(s) 324, 437, 492
HgaI GACGC 1 cut(s) 130
HhaI GCGC 1 cut(s) 238
Hin1II CATG 2 cut(s) 314, 406
Hin6I GCGC 1 cut(s) 236
HinP1I GCGC 1 cut(s) 236
HincII GTYRAC 2 cut(s) 75, 448
HindII GTYRAC 2 cut(s) 75, 448
HinfI GANTC 3 cut(s) 25, 283, 406
HpaII CCGG 3 cut(s) 324, 437, 492
HphI GGTGA 5 cut(s) 166, 222, 287, 573, 676
Hpy166II GTNNAC 7 cut(s) 75, 334, 351, 376, 434, 448, 507
Hpy188I TCNGA 3 cut(s) 92, 423, 697
Hpy188III TCNNGA 2 cut(s) 492, 768
Hpy8I GTNNAC 7 cut(s) 75, 334, 351, 376, 434, 448, 507
Hpy99I CGWCG 2 cut(s) 73, 92
HpyAV CCTTC 4 cut(s) 73, 348, 428, 602
HpyCH4III ACNGT 1 cut(s) 445
HpyCH4IV ACGT 3 cut(s) 71, 276, 567
HpyCH4V TGCA 4 cut(s) 256, 550, 620, 632
HpyF10VI GCNNNNNNNGC 4 cut(s) 266, 509, 626, 635
HpyF3I CTNAG 1 cut(s) 224
HpySE526I ACGT 3 cut(s) 71, 276, 567
Hsp92II CATG 2 cut(s) 314, 406
HspAI GCGC 1 cut(s) 236
Kpn2I TCCGGA 1 cut(s) 491
Ksp22I TGATCA 1 cut(s) 697
Kzo9I GATC 3 cut(s) 194, 227, 697
LmnI GCTCC 4 cut(s) 129, 265, 575, 643
Lsp1109I GCAGC 3 cut(s) 52, 256, 616
LweI GCATC 1 cut(s) 587
MaeI CTAG 1 cut(s) 758
MaeII ACGT 3 cut(s) 71, 276, 567
MalI GATC 3 cut(s) 196, 229, 699
MboI GATC 3 cut(s) 194, 227, 697
MboII GAAGA 1 cut(s) 76
MfeI CAATTG 1 cut(s) 735
MhlI GDGCHC 1 cut(s) 765
MluCI AATT 8 cut(s) 49, 528, 551, 600, 670, 680, 722, 735
MlyI GAGTC 1 cut(s) 292
MmeI TCCRAC 2 cut(s) 70, 588
MnlI CCTC 5 cut(s) 86, 154, 254, 312, 687
MroI TCCGGA 1 cut(s) 491
MroXI GAANNNNTTC 1 cut(s) 83
MspA1I CMGCKG 1 cut(s) 43
MspI CCGG 3 cut(s) 324, 437, 492
MspR9I CCNGG 8 cut(s) 103, 288, 324, 325, 438, 453, 534, 642
MunI CAATTG 1 cut(s) 735
MvaI CCWGG 5 cut(s) 103, 288, 453, 534, 642
MwoI GCNNNNNNNGC 4 cut(s) 266, 509, 626, 635
NciI CCSGG 3 cut(s) 324, 325, 438
NdeI CATATG 1 cut(s) 358
NdeII GATC 3 cut(s) 194, 227, 697
NlaIII CATG 2 cut(s) 314, 406
NlaIV GGNNCC 1 cut(s) 562
PaeR7I CTCGAG 1 cut(s) 158
PcsI WCGNNNNNNNCGW 3 cut(s) 74, 165, 174
PdmI GAANNNNTTC 1 cut(s) 83
PfeI GAWTC 2 cut(s) 25, 406
PfoI TCCNGGA 1 cut(s) 640
PkrI GCNGC 4 cut(s) 42, 131, 271, 631
PleI GAGTC 1 cut(s) 291
PpsI GAGTC 1 cut(s) 291
Ppu21I YACGTR 1 cut(s) 277
PshAI GACNNNNGTC 1 cut(s) 80
Psp6I CCWGG 5 cut(s) 101, 286, 451, 532, 640
PspGI CCWGG 5 cut(s) 101, 286, 451, 532, 640
PspN4I GGNNCC 1 cut(s) 562
PspPI GGNCC 2 cut(s) 362, 561
PspXI VCTCGAGB 1 cut(s) 158
PstI CTGCAG 1 cut(s) 622
PstNI CAGNNNCTG 1 cut(s) 43
PvuII CAGCTG 1 cut(s) 43
RsaI GTAC 4 cut(s) 146, 350, 401, 435
RsaNI GTAC 4 cut(s) 145, 349, 400, 434
SatI GCNGC 4 cut(s) 41, 130, 270, 630
Sau3AI GATC 3 cut(s) 194, 227, 697
Sau96I GGNCC 2 cut(s) 362, 561
SbfI CCTGCAGG 1 cut(s) 622
SchI GAGTC 1 cut(s) 292
ScrFI CCNGG 8 cut(s) 103, 288, 324, 325, 438, 453, 534, 642
SdaI CCTGCAGG 1 cut(s) 622
SduI GDGCHC 1 cut(s) 765
SfaNI GCATC 1 cut(s) 587
SfcI CTRYAG 2 cut(s) 391, 618
Sfr274I CTCGAG 1 cut(s) 158
SinI GGWCC 2 cut(s) 362, 561
SlaI CTCGAG 1 cut(s) 158
SmaI CCCGGG 1 cut(s) 325
SmlI CTYRAG 1 cut(s) 158
SmoI CTYRAG 1 cut(s) 158
Sse8387I CCTGCAGG 1 cut(s) 622
Sse9I AATT 8 cut(s) 49, 528, 551, 600, 670, 680, 722, 735
SsiI CCGC 6 cut(s) 127, 130, 164, 189, 476, 512
SspI AATATT 1 cut(s) 718
SspMI CTAG 1 cut(s) 758
StyD4I CCNGG 8 cut(s) 101, 286, 322, 323, 436, 451, 532, 640
StyI CCWWGG 1 cut(s) 757
TaaI ACNGT 1 cut(s) 445
TaiI ACGT 3 cut(s) 74, 279, 570
TaqI TCGA 2 cut(s) 138, 159
TaqII GACCGA 1 cut(s) 236
TasI AATT 8 cut(s) 49, 528, 551, 600, 670, 680, 722, 735
TauI GCSGC 1 cut(s) 132
TfiI GAWTC 2 cut(s) 25, 406
TscAI CASTG 2 cut(s) 562, 577
TseI GCWGC 3 cut(s) 40, 269, 629
TspDTI ATGAA 2 cut(s) 419, 696
TspGWI ACGGA 1 cut(s) 387
TspMI CCCGGG 1 cut(s) 323
TspRI CASTG 2 cut(s) 562, 577
VpaK11BI GGWCC 2 cut(s) 362, 561
XapI RAATTY 2 cut(s) 528, 722
XhoI CTCGAG 1 cut(s) 158
XmaI CCCGGG 1 cut(s) 323
XmaJI CCTAGG 1 cut(s) 757
XmiI GTMKAC 2 cut(s) 375, 506
XmnI GAANNNNTTC 1 cut(s) 83
XspI CTAG 1 cut(s) 758
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.