Rroxscaffold_2G00145320

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001423
Physical Location & Seq
Reverse (-)
83231093 .. 83234839
3747 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00145320.1

Sequence Viewer

Length: 864 bp
ATGGCTTACCCACAACAACAACAACAACAACAACAACAACAACAACAGAATCAACAACAACAGCAGCTGTTCAATTCGCCGTTCGGGGACACGACGTTGACGAAGGTCTTCGTCGGAGGGCTGGCCTGGGAGACCCAGAGCGAGACGCTCCGCCGCCACTTCGAGCAGTACGGCGATATACTCGAGGCCGTCGTCATCACCGATAAGAACACCGCCCGATCCAAAGGCTATGGCTTTGTCACATTTCGTGATCCCGACTCTGCAAGAAGGGCCTGTGCGGACCCCAATCCTGTTATTGATGGCCGCAGGGCTAACTGTAATCTTGCTTCTCTAGGCCGCCCTCGCCCATCATTCCATTTCCCCGGGCAACTGAGATCACCAGCGCCAATCCTGGGTCGTCTGCAAGCTCCAAGAGCTGCTTACGTGGGGAGTCCTGGTTATCACCACCCTCTTTCTCATGCTTATCAGCCCGGGTTTGTTTACCCTTCTTATGGGTACACAGCATATGGACCTGAATATGTCTACCCACAGCAGGGTGTCTATAGTCCATACATGAATCAGCAATACCTTCAGATGTATGGTGTACCGGGGACAGTCAACCCGGGTGTATATCCTTACGGACAAGCGGGTCATTCTCTTTCCGGCAATCCTGCGTATACGGCGGTTCAAGGCTATGGAATTCCAGGCCATCATATAATGCAATTCACTGGGTCCAACGTCAGTGGAGCATCACCAGTTGCCCTTCCCACAATTCAAACACCATATCCTGCAGGTATAGCTGCACCAGCTCCAGGACAGGCACAACTTTTACTTCCTACTAATTCTCCACAATTCACCAGCAGTTCTGATCAAACTGCAGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

287

Amino Acids

31.24

Weight (kDa)

8.76

Isoelectric Point (pI)

61.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 36 - 93 9.2e-18 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 627
Acc36I ACCTGC 1 cut(s) 761
AccI GTMKAC 2 cut(s) 522, 656
AciI CCGC 8 cut(s) 151, 154, 213, 278, 304, 337, 626, 662
AclWI GGATC 2 cut(s) 213, 245
AcoI YGGCCR 1 cut(s) 301
AcsI RAATTY 1 cut(s) 678
AcuI CTGAAG 1 cut(s) 554
AfaI GTAC 3 cut(s) 170, 497, 585
AfiI CCNNNNNNNGG 5 cut(s) 392, 491, 532, 533, 791
AgsI TTSAA 3 cut(s) 73, 668, 755
AjnI CCWGG 5 cut(s) 125, 390, 433, 682, 790
AluBI AGCT 5 cut(s) 67, 407, 416, 779, 788
AluI AGCT 5 cut(s) 67, 407, 416, 779, 788
Alw26I GTCTC 2 cut(s) 125, 137
AlwI GGATC 2 cut(s) 213, 245
AlwNI CAGNNNCTG 1 cut(s) 67
Ama87I CYCGRG 4 cut(s) 182, 362, 470, 601
AoxI GGCC 6 cut(s) 123, 186, 270, 301, 334, 685
ApeKI GCWGC 3 cut(s) 64, 416, 779
ApoI RAATTY 1 cut(s) 678
Asp700I GAANNNNTTC 1 cut(s) 107
AspLEI GCGC 1 cut(s) 385
AspS9I GGNCC 4 cut(s) 270, 280, 509, 711
AsuC2I CCSGG 7 cut(s) 363, 364, 471, 472, 588, 602, 603
AsuHPI GGTGA 5 cut(s) 190, 369, 434, 723, 826
AvaI CYCGRG 4 cut(s) 182, 362, 470, 601
AvaII GGWCC 3 cut(s) 280, 509, 711
BarI GAAGNNNNNNTAC 2 cut(s) 310, 342
BbsI GAAGAC 1 cut(s) 100
BbvI GCAGC 3 cut(s) 76, 403, 766
BccI CCATC 3 cut(s) 293, 355, 696
BceAI ACGGC 4 cut(s) 64, 173, 187, 675
BciT130I CCWGG 5 cut(s) 127, 392, 435, 684, 792
BclI TGATCA 1 cut(s) 847
BcnI CCSGG 7 cut(s) 363, 364, 471, 472, 588, 602, 603
BcoDI GTCTC 2 cut(s) 125, 137
BfaI CTAG 1 cut(s) 332
BfmI CTRYAG 3 cut(s) 541, 768, 855
BfoI RGCGCY 1 cut(s) 386
BfuAI ACCTGC 1 cut(s) 761
BisI GCNGC 6 cut(s) 65, 154, 304, 337, 417, 780
BlsI GCNGC 6 cut(s) 66, 155, 305, 338, 418, 781
Bme18I GGWCC 3 cut(s) 280, 509, 711
BmeT110I CYCGRG 4 cut(s) 182, 362, 470, 601
BmgT120I GGNCC 4 cut(s) 270, 280, 509, 711
BmiI GGNNCC 2 cut(s) 282, 712
BmrI ACTGGG 1 cut(s) 717
BmsI GCATC 1 cut(s) 737
BmuI ACTGGG 1 cut(s) 717
BoxI GACNNNNGTC 1 cut(s) 104
BpiI GAAGAC 1 cut(s) 100
BpmI CTGGAG 1 cut(s) 774
BpuMI CCSGG 7 cut(s) 363, 364, 471, 472, 588, 602, 603
BsaAI YACGTR 1 cut(s) 424
BsaI GGTCTC 1 cut(s) 125
BsaJI CCNNGG 7 cut(s) 126, 361, 362, 391, 470, 587, 601
BsaXI ACNNNNNCTCC 4 cut(s) 421, 451, 808, 838
Bsc4I CCNNNNNNNGG 5 cut(s) 392, 491, 532, 533, 791
Bse1I ACTGG 2 cut(s) 712, 734
BseBI CCWGG 5 cut(s) 127, 392, 435, 684, 792
BseDI CCNNGG 7 cut(s) 126, 361, 362, 391, 470, 587, 601
BseLI CCNNNNNNNGG 5 cut(s) 392, 491, 532, 533, 791
BseMII CTCAG 1 cut(s) 362
BseNI ACTGG 2 cut(s) 712, 734
BseXI GCAGC 3 cut(s) 76, 403, 766
BsgI GTGCAG 1 cut(s) 765
BshFI GGCC 6 cut(s) 125, 188, 272, 303, 336, 687
BsiHKCI CYCGRG 4 cut(s) 182, 362, 470, 601
BsiSI CCGG 5 cut(s) 363, 471, 587, 602, 642
BslFI GGGAC 2 cut(s) 101, 604
BslI CCNNNNNNNGG 5 cut(s) 392, 491, 532, 533, 791
BsmAI GTCTC 2 cut(s) 125, 137
BsmBI CGTCTC 1 cut(s) 137
BsmFI GGGAC 2 cut(s) 101, 604
BsnI GGCC 6 cut(s) 125, 188, 272, 303, 336, 687
Bso31I GGTCTC 1 cut(s) 125
BsoBI CYCGRG 4 cut(s) 182, 362, 470, 601
Bsp143I GATC 4 cut(s) 218, 250, 374, 847
BspACI CCGC 8 cut(s) 151, 154, 213, 278, 304, 337, 626, 662
BspANI GGCC 6 cut(s) 125, 188, 272, 303, 336, 687
BspCNI CTCAG 1 cut(s) 363
BspLI GGNNCC 2 cut(s) 282, 712
BspMAI CTGCAG 2 cut(s) 772, 859
BspMI ACCTGC 1 cut(s) 761
BspPI GGATC 2 cut(s) 213, 245
BspTNI GGTCTC 1 cut(s) 125
BsrI ACTGG 2 cut(s) 712, 734
BssECI CCNNGG 7 cut(s) 126, 361, 362, 391, 470, 587, 601
BssMI GATC 4 cut(s) 218, 250, 374, 847
BssNAI GTATAC 1 cut(s) 657
Bst1107I GTATAC 1 cut(s) 657
Bst2UI CCWGG 5 cut(s) 127, 392, 435, 684, 792
Bst4CI ACNGT 2 cut(s) 317, 595
BstBAI YACGTR 1 cut(s) 424
BstC8I GCNNGC 2 cut(s) 123, 405
BstDEI CTNAG 1 cut(s) 371
BstH2I RGCGCY 1 cut(s) 386
BstHHI GCGC 1 cut(s) 385
BstKTI GATC 4 cut(s) 221, 253, 377, 850
BstMAI GTCTC 2 cut(s) 125, 137
BstMBI GATC 4 cut(s) 218, 250, 374, 847
BstMWI GCNNNNNNNGC 6 cut(s) 269, 342, 413, 659, 776, 785
BstNI CCWGG 5 cut(s) 127, 392, 435, 684, 792
BstPAI GACNNNNGTC 1 cut(s) 104
BstSFI CTRYAG 3 cut(s) 541, 768, 855
BstV1I GCAGC 3 cut(s) 76, 403, 766
BstV2I GAAGAC 1 cut(s) 100
BstZ17I GTATAC 1 cut(s) 657
BsuRI GGCC 6 cut(s) 125, 188, 272, 303, 336, 687
BtsIMutI CAGTG 2 cut(s) 705, 727
BveI ACCTGC 1 cut(s) 761
Cac8I GCNNGC 2 cut(s) 123, 405
CaiI CAGNNNCTG 1 cut(s) 67
CfoI GCGC 1 cut(s) 385
Cfr13I GGNCC 4 cut(s) 270, 280, 509, 711
Cfr9I CCCGGG 3 cut(s) 362, 470, 601
CseI GACGC 1 cut(s) 154
Csp6I GTAC 3 cut(s) 169, 496, 584
CspCI CAANNNNNGTGG 2 cut(s) 703, 738
CviAII CATG 2 cut(s) 458, 553
CviQI GTAC 3 cut(s) 169, 496, 584
DdeI CTNAG 1 cut(s) 371
DpnI GATC 4 cut(s) 220, 252, 376, 849
DpnII GATC 4 cut(s) 218, 250, 374, 847
DrdI GACNNNNNNGTC 1 cut(s) 627
DseDI GACNNNNNNGTC 1 cut(s) 627
EaeI YGGCCR 1 cut(s) 301
EciI GGCGGA 1 cut(s) 140
Eco31I GGTCTC 1 cut(s) 125
Eco47I GGWCC 3 cut(s) 280, 509, 711
Eco57I CTGAAG 1 cut(s) 554
Eco88I CYCGRG 4 cut(s) 182, 362, 470, 601
EcoO109I RGGNCCY 1 cut(s) 270
EcoRI GAATTC 1 cut(s) 678
EcoRII CCWGG 5 cut(s) 125, 390, 433, 682, 790
Esp3I CGTCTC 1 cut(s) 137
FaeI CATG 2 cut(s) 461, 556
FalI AAGNNNNNCTT 2 cut(s) 403, 435
FaqI GGGAC 2 cut(s) 101, 604
FatI CATG 2 cut(s) 457, 552
FauI CCCGC 1 cut(s) 619
FauNDI CATATG 1 cut(s) 505
FbaI TGATCA 1 cut(s) 847
FblI GTMKAC 2 cut(s) 522, 656
Fnu4HI GCNGC 6 cut(s) 65, 154, 304, 337, 417, 780
Fsp4HI GCNGC 6 cut(s) 65, 154, 304, 337, 417, 780
FspBI CTAG 1 cut(s) 332
GlaI GCGC 1 cut(s) 384
GluI GCNGC 6 cut(s) 65, 154, 304, 337, 417, 780
GsuI CTGGAG 1 cut(s) 774
HaeII RGCGCY 1 cut(s) 386
HaeIII GGCC 6 cut(s) 125, 188, 272, 303, 336, 687
HapII CCGG 5 cut(s) 363, 471, 587, 602, 642
HgaI GACGC 1 cut(s) 154
HhaI GCGC 1 cut(s) 385
Hin1II CATG 2 cut(s) 461, 556
Hin6I GCGC 1 cut(s) 383
HinP1I GCGC 1 cut(s) 383
HincII GTYRAC 2 cut(s) 99, 598
HindII GTYRAC 2 cut(s) 99, 598
HinfI GANTC 4 cut(s) 49, 257, 430, 556
HpaII CCGG 5 cut(s) 363, 471, 587, 602, 642
HphI GGTGA 5 cut(s) 190, 369, 434, 723, 826
Hpy166II GTNNAC 7 cut(s) 99, 481, 498, 523, 584, 598, 657
Hpy188I TCNGA 3 cut(s) 116, 573, 847
Hpy188III TCNNGA 2 cut(s) 248, 254
Hpy8I GTNNAC 7 cut(s) 99, 481, 498, 523, 584, 598, 657
Hpy99I CGWCG 3 cut(s) 97, 116, 194
HpyAV CCTTC 5 cut(s) 97, 261, 495, 578, 752
HpyCH4III ACNGT 2 cut(s) 317, 595
HpyCH4IV ACGT 3 cut(s) 95, 423, 717
HpyCH4V TGCA 6 cut(s) 263, 403, 700, 770, 782, 857
HpyF10VI GCNNNNNNNGC 6 cut(s) 269, 342, 413, 659, 776, 785
HpyF3I CTNAG 1 cut(s) 371
HpySE526I ACGT 3 cut(s) 95, 423, 717
Hsp92II CATG 2 cut(s) 461, 556
HspAI GCGC 1 cut(s) 383
Ksp22I TGATCA 1 cut(s) 847
Kzo9I GATC 4 cut(s) 218, 250, 374, 847
LmnI GCTCC 4 cut(s) 153, 412, 725, 793
Lsp1109I GCAGC 3 cut(s) 76, 403, 766
LweI GCATC 1 cut(s) 737
MaeI CTAG 1 cut(s) 332
MaeII ACGT 3 cut(s) 95, 423, 717
MaeIII GTNAC 1 cut(s) 238
MalI GATC 4 cut(s) 220, 252, 376, 849
MboI GATC 4 cut(s) 218, 250, 374, 847
MboII GAAGA 1 cut(s) 100
MluCI AATT 6 cut(s) 73, 678, 701, 750, 820, 830
MlyI GAGTC 2 cut(s) 251, 439
MmeI TCCRAC 2 cut(s) 94, 738
MnlI CCTC 4 cut(s) 110, 178, 351, 459
MroXI GAANNNNTTC 1 cut(s) 107
MspA1I CMGCKG 1 cut(s) 67
MspI CCGG 5 cut(s) 363, 471, 587, 602, 642
MvaI CCWGG 5 cut(s) 127, 392, 435, 684, 792
MwoI GCNNNNNNNGC 6 cut(s) 269, 342, 413, 659, 776, 785
NciI CCSGG 7 cut(s) 363, 364, 471, 472, 588, 602, 603
NdeI CATATG 1 cut(s) 505
NdeII GATC 4 cut(s) 218, 250, 374, 847
NlaIII CATG 2 cut(s) 461, 556
NlaIV GGNNCC 2 cut(s) 282, 712
NmuCI GTSAC 1 cut(s) 238
PaeR7I CTCGAG 1 cut(s) 182
PcsI WCGNNNNNNNCGW 3 cut(s) 98, 189, 198
PdmI GAANNNNTTC 1 cut(s) 107
PfeI GAWTC 2 cut(s) 49, 556
PfoI TCCNGGA 1 cut(s) 790
PkrI GCNGC 6 cut(s) 66, 155, 305, 338, 418, 781
PleI GAGTC 2 cut(s) 251, 438
PpsI GAGTC 2 cut(s) 251, 438
Ppu21I YACGTR 1 cut(s) 424
PshAI GACNNNNGTC 1 cut(s) 104
Psp6I CCWGG 5 cut(s) 125, 390, 433, 682, 790
PspGI CCWGG 5 cut(s) 125, 390, 433, 682, 790
PspN4I GGNNCC 2 cut(s) 282, 712
PspPI GGNCC 4 cut(s) 270, 280, 509, 711
PspXI VCTCGAGB 1 cut(s) 182
PstI CTGCAG 2 cut(s) 772, 859
PstNI CAGNNNCTG 1 cut(s) 67
PvuII CAGCTG 1 cut(s) 67
RsaI GTAC 3 cut(s) 170, 497, 585
RsaNI GTAC 3 cut(s) 169, 496, 584
SatI GCNGC 6 cut(s) 65, 154, 304, 337, 417, 780
Sau3AI GATC 4 cut(s) 218, 250, 374, 847
Sau96I GGNCC 4 cut(s) 270, 280, 509, 711
SbfI CCTGCAGG 1 cut(s) 772
SchI GAGTC 2 cut(s) 251, 439
SdaI CCTGCAGG 1 cut(s) 772
SfaNI GCATC 1 cut(s) 737
SfcI CTRYAG 3 cut(s) 541, 768, 855
Sfr274I CTCGAG 1 cut(s) 182
SinI GGWCC 3 cut(s) 280, 509, 711
SlaI CTCGAG 1 cut(s) 182
SmaI CCCGGG 3 cut(s) 364, 472, 603
SmlI CTYRAG 1 cut(s) 182
SmoI CTYRAG 1 cut(s) 182
Sse8387I CCTGCAGG 1 cut(s) 772
Sse9I AATT 6 cut(s) 73, 678, 701, 750, 820, 830
SsiI CCGC 8 cut(s) 151, 154, 213, 278, 304, 337, 626, 662
SspMI CTAG 1 cut(s) 332
TaaI ACNGT 2 cut(s) 317, 595
TaiI ACGT 3 cut(s) 98, 426, 720
TaqI TCGA 2 cut(s) 162, 183
TasI AATT 6 cut(s) 73, 678, 701, 750, 820, 830
TauI GCSGC 3 cut(s) 156, 306, 339
TfiI GAWTC 2 cut(s) 49, 556
TscAI CASTG 2 cut(s) 712, 727
TseFI GTSAC 1 cut(s) 238
TseI GCWGC 3 cut(s) 64, 416, 779
Tsp45I GTSAC 1 cut(s) 238
TspDTI ATGAA 1 cut(s) 569
TspGWI ACGGA 1 cut(s) 633
TspMI CCCGGG 3 cut(s) 362, 470, 601
TspRI CASTG 2 cut(s) 712, 727
VpaK11BI GGWCC 3 cut(s) 280, 509, 711
XapI RAATTY 1 cut(s) 678
XhoI CTCGAG 1 cut(s) 182
XmaI CCCGGG 3 cut(s) 362, 470, 601
XmiI GTMKAC 2 cut(s) 522, 656
XmnI GAANNNNTTC 1 cut(s) 107
XspI CTAG 1 cut(s) 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.