trafficking protein particle complex
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| ANAPC3 | PF12895 | 17 - 88 | 1e-16 | Anaphase-promoting complex, cyclosome, subunit 3 |
| TPR_1 | PF00515 | 533 - 565 | 1.2e-07 | Tetratricopeptide repeat |
| TPR_19 | PF14559 | 646 - 711 | 1.3e-09 | Tetratricopeptide repeat |
| TPR-S | PF20308 | 651 - 718 | 4.6e-06 | Tetratricopeptide Repeats-Sensor |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1800, 2136 |
| Acc16I | TGCGCA | 1 cut(s) | 1704 |
| Acc36I | ACCTGC | 1 cut(s) | 296 |
| AccB1I | GGYRCC | 1 cut(s) | 1335 |
| AccI | GTMKAC | 1 cut(s) | 338 |
| AccII | CGCG | 1 cut(s) | 42 |
| AccIII | TCCGGA | 1 cut(s) | 1869 |
| AciI | CCGC | 5 cut(s) | 55, 159, 773, 1266, 2140 |
| AcsI | RAATTY | 4 cut(s) | 109, 643, 1660, 1691 |
| AcuI | CTGAAG | 5 cut(s) | 462, 984, 1257, 1444, 1676 |
| AfaI | GTAC | 5 cut(s) | 497, 823, 1331, 1398, 2250 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 686, 1812, 2238 |
| AhlI | ACTAGT | 1 cut(s) | 1184 |
| AjnI | CCWGG | 5 cut(s) | 1338, 1404, 1557, 1734, 1805 |
| Alw21I | GWGCWC | 3 cut(s) | 854, 1572, 1777 |
| Alw26I | GTCTC | 4 cut(s) | 12, 86, 98, 1124 |
| Alw44I | GTGCAC | 1 cut(s) | 1773 |
| Aor13HI | TCCGGA | 1 cut(s) | 1869 |
| AoxI | GGCC | 3 cut(s) | 802, 1095, 1455 |
| ApaLI | GTGCAC | 1 cut(s) | 1773 |
| ApoI | RAATTY | 4 cut(s) | 109, 643, 1660, 1691 |
| AseI | ATTAAT | 1 cut(s) | 2033 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 907, 1661 |
| AspA2I | CCTAGG | 1 cut(s) | 836 |
| AspLEI | GCGC | 3 cut(s) | 89, 302, 1705 |
| AspS9I | GGNCC | 2 cut(s) | 1095, 1455 |
| AsuHPI | GGTGA | 3 cut(s) | 20, 523, 1473 |
| AsuII | TTCGAA | 1 cut(s) | 901 |
| AvrII | CCTAGG | 1 cut(s) | 836 |
| BaeGI | GKGCMC | 1 cut(s) | 1777 |
| BanI | GGYRCC | 1 cut(s) | 1335 |
| BanII | GRGCYC | 3 cut(s) | 854, 1055, 1572 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1538, 1570 |
| BauI | CACGAG | 1 cut(s) | 2097 |
| BbsI | GAAGAC | 1 cut(s) | 2271 |
| Bbv12I | GWGCWC | 3 cut(s) | 854, 1572, 1777 |
| BbvCI | CCTCAGC | 1 cut(s) | 812 |
| BccI | CCATC | 6 cut(s) | 368, 372, 1205, 1867, 2116, 2206 |
| BceAI | ACGGC | 1 cut(s) | 703 |
| BciT130I | CCWGG | 5 cut(s) | 1340, 1406, 1559, 1736, 1807 |
| BcoDI | GTCTC | 4 cut(s) | 12, 86, 98, 1124 |
| BcuI | ACTAGT | 1 cut(s) | 1184 |
| BfaI | CTAG | 6 cut(s) | 279, 431, 837, 912, 1185, 1433 |
| BfmI | CTRYAG | 4 cut(s) | 387, 1056, 1515, 1624 |
| BfuAI | ACCTGC | 1 cut(s) | 296 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2225 |
| BlnI | CCTAGG | 1 cut(s) | 836 |
| BlpI | GCTNAGC | 1 cut(s) | 1588 |
| Bme1390I | CCNGG | 5 cut(s) | 1340, 1406, 1559, 1736, 1807 |
| BmgT120I | GGNCC | 2 cut(s) | 1095, 1455 |
| BmiI | GGNNCC | 2 cut(s) | 291, 1337 |
| BmrFI | CCNGG | 5 cut(s) | 1340, 1406, 1559, 1736, 1807 |
| BmsI | GCATC | 4 cut(s) | 1333, 1487, 1777, 1870 |
| BpiI | GAAGAC | 1 cut(s) | 2271 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 83, 115 |
| Bpu10I | CCTNAGC | 1 cut(s) | 812 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1588 |
| Bpu14I | TTCGAA | 1 cut(s) | 901 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1356 |
| BsaJI | CCNNGG | 4 cut(s) | 836, 996, 1091, 1734 |
| BsaWI | WCCGGW | 2 cut(s) | 1869, 2251 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 721, 751 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 686, 1812, 2238 |
| Bse118I | RCCGGY | 1 cut(s) | 775 |
| Bse1I | ACTGG | 1 cut(s) | 1353 |
| Bse3DI | GCAATG | 4 cut(s) | 1617, 1928, 2169, 2178 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1356 |
| BseAI | TCCGGA | 1 cut(s) | 1869 |
| BseBI | CCWGG | 5 cut(s) | 1340, 1406, 1559, 1736, 1807 |
| BseDI | CCNNGG | 4 cut(s) | 836, 996, 1091, 1734 |
| BseGI | GGATG | 8 cut(s) | 134, 360, 1348, 1357, 1510, 1744, 1878, 2260 |
| BseJI | GATNNNNATC | 1 cut(s) | 1356 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 686, 1812, 2238 |
| BseMI | GCAATG | 4 cut(s) | 1617, 1928, 2169, 2178 |
| BseMII | CTCAG | 2 cut(s) | 826, 1610 |
| BseNI | ACTGG | 1 cut(s) | 1353 |
| BseRI | GAGGAG | 3 cut(s) | 678, 1584, 2085 |
| BseSI | GKGCMC | 1 cut(s) | 1777 |
| BseYI | CCCAGC | 2 cut(s) | 866, 1392 |
| BsgI | GTGCAG | 1 cut(s) | 303 |
| Bsh1236I | CGCG | 1 cut(s) | 42 |
| BshFI | GGCC | 3 cut(s) | 804, 1097, 1457 |
| BshNI | GGYRCC | 1 cut(s) | 1335 |
| BsiHKAI | GWGCWC | 3 cut(s) | 854, 1572, 1777 |
| BsiSI | CCGG | 3 cut(s) | 776, 1870, 2252 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 686, 1812, 2238 |
| BsmAI | GTCTC | 4 cut(s) | 12, 86, 98, 1124 |
| BsmBI | CGTCTC | 1 cut(s) | 86 |
| BsnI | GGCC | 3 cut(s) | 804, 1097, 1457 |
| Bsp119I | TTCGAA | 1 cut(s) | 901 |
| Bsp1286I | GDGCHC | 4 cut(s) | 854, 1055, 1572, 1777 |
| Bsp13I | TCCGGA | 1 cut(s) | 1869 |
| Bsp1407I | TGTACA | 1 cut(s) | 1329 |
| Bsp143I | GATC | 2 cut(s) | 1582, 1639 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1588 |
| Bsp19I | CCATGG | 2 cut(s) | 996, 1091 |
| Bsp68I | TCGCGA | 1 cut(s) | 42 |
| BspACI | CCGC | 5 cut(s) | 55, 159, 773, 1266, 2140 |
| BspANI | GGCC | 3 cut(s) | 804, 1097, 1457 |
| BspCNI | CTCAG | 2 cut(s) | 825, 1609 |
| BspEI | TCCGGA | 1 cut(s) | 1869 |
| BspFNI | CGCG | 1 cut(s) | 42 |
| BspHI | TCATGA | 2 cut(s) | 1642, 1720 |
| BspLI | GGNNCC | 2 cut(s) | 291, 1337 |
| BspMI | ACCTGC | 1 cut(s) | 296 |
| BspQI | GCTCTTC | 1 cut(s) | 411 |
| BspT104I | TTCGAA | 1 cut(s) | 901 |
| BspT107I | GGYRCC | 1 cut(s) | 1335 |
| BsrDI | GCAATG | 4 cut(s) | 1617, 1928, 2169, 2178 |
| BsrFI | RCCGGY | 1 cut(s) | 775 |
| BsrGI | TGTACA | 1 cut(s) | 1329 |
| BsrI | ACTGG | 1 cut(s) | 1353 |
| BssAI | RCCGGY | 1 cut(s) | 775 |
| BssECI | CCNNGG | 4 cut(s) | 836, 996, 1091, 1734 |
| BssMI | GATC | 2 cut(s) | 1582, 1639 |
| BssNAI | GTATAC | 1 cut(s) | 339 |
| BssSI | CACGAG | 1 cut(s) | 2097 |
| BssT1I | CCWWGG | 3 cut(s) | 836, 996, 1091 |
| Bst1107I | GTATAC | 1 cut(s) | 339 |
| Bst2BI | CACGAG | 1 cut(s) | 2097 |
| Bst2UI | CCWGG | 5 cut(s) | 1340, 1406, 1559, 1736, 1807 |
| Bst4CI | ACNGT | 5 cut(s) | 495, 535, 859, 1490, 1519 |
| Bst6I | CTCTTC | 1 cut(s) | 411 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1934 |
| BstAUI | TGTACA | 1 cut(s) | 1329 |
| BstBI | TTCGAA | 1 cut(s) | 901 |
| BstC8I | GCNNGC | 7 cut(s) | 77, 1063, 1248, 1631, 1671, 1935, 2115 |
| BstDEI | CTNAG | 5 cut(s) | 812, 1044, 1588, 1596, 2041 |
| BstDSI | CCRYGG | 2 cut(s) | 996, 1091 |
| BstF5I | GGATG | 8 cut(s) | 134, 360, 1348, 1357, 1510, 1744, 1878, 2260 |
| BstFNI | CGCG | 1 cut(s) | 42 |
| BstHHI | GCGC | 3 cut(s) | 89, 302, 1705 |
| BstKTI | GATC | 2 cut(s) | 1585, 1642 |
| BstMAI | GTCTC | 4 cut(s) | 12, 86, 98, 1124 |
| BstMBI | GATC | 2 cut(s) | 1582, 1639 |
| BstNI | CCWGG | 5 cut(s) | 1340, 1406, 1559, 1736, 1807 |
| BstNSI | RCATGY | 5 cut(s) | 1250, 1330, 1937, 2117, 2152 |
| BstSCI | CCNGG | 5 cut(s) | 1338, 1404, 1557, 1734, 1805 |
| BstSFI | CTRYAG | 4 cut(s) | 387, 1056, 1515, 1624 |
| BstSLI | GKGCMC | 1 cut(s) | 1777 |
| BstUI | CGCG | 1 cut(s) | 42 |
| BstV2I | GAAGAC | 1 cut(s) | 2271 |
| BstZ17I | GTATAC | 1 cut(s) | 339 |
| BsuRI | GGCC | 3 cut(s) | 804, 1097, 1457 |
| BtgI | CCRYGG | 2 cut(s) | 996, 1091 |
| BtsCI | GGATG | 8 cut(s) | 134, 360, 1348, 1357, 1510, 1744, 1878, 2260 |
| BtsI | GCAGTG | 1 cut(s) | 2214 |
| BtsIMutI | CAGTG | 2 cut(s) | 1346, 2214 |
| BtuMI | TCGCGA | 1 cut(s) | 42 |
| BveI | ACCTGC | 1 cut(s) | 296 |
| Cac8I | GCNNGC | 7 cut(s) | 77, 1063, 1248, 1631, 1671, 1935, 2115 |
| CciI | TCATGA | 2 cut(s) | 1642, 1720 |
| CfoI | GCGC | 3 cut(s) | 89, 302, 1705 |
| Cfr10I | RCCGGY | 1 cut(s) | 775 |
| Cfr13I | GGNCC | 2 cut(s) | 1095, 1455 |
| CseI | GACGC | 3 cut(s) | 68, 981, 1899 |
| Csp6I | GTAC | 5 cut(s) | 496, 822, 1330, 1397, 2249 |
| CviQI | GTAC | 5 cut(s) | 496, 822, 1330, 1397, 2249 |
| DdeI | CTNAG | 5 cut(s) | 812, 1044, 1588, 1596, 2041 |
| DpnI | GATC | 2 cut(s) | 1584, 1641 |
| DpnII | GATC | 2 cut(s) | 1582, 1639 |
| DraI | TTTAAA | 2 cut(s) | 174, 373 |
| Eam1104I | CTCTTC | 1 cut(s) | 411 |
| EarI | CTCTTC | 1 cut(s) | 411 |
| Ecl136II | GAGCTC | 2 cut(s) | 852, 1570 |
| Eco130I | CCWWGG | 3 cut(s) | 836, 996, 1091 |
| Eco24I | GRGCYC | 3 cut(s) | 854, 1055, 1572 |
| Eco32I | GATATC | 1 cut(s) | 1199 |
| Eco53kI | GAGCTC | 2 cut(s) | 852, 1570 |
| Eco57I | CTGAAG | 5 cut(s) | 462, 984, 1257, 1444, 1676 |
| EcoICRI | GAGCTC | 2 cut(s) | 852, 1570 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1455 |
| EcoRII | CCWGG | 5 cut(s) | 1338, 1404, 1557, 1734, 1805 |
| EcoRV | GATATC | 1 cut(s) | 1199 |
| EcoT14I | CCWWGG | 3 cut(s) | 836, 996, 1091 |
| EcoT22I | ATGCAT | 3 cut(s) | 1248, 1328, 2154 |
| EcoT38I | GRGCYC | 3 cut(s) | 854, 1055, 1572 |
| ErhI | CCWWGG | 3 cut(s) | 836, 996, 1091 |
| Esp3I | CGTCTC | 1 cut(s) | 86 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 882, 914, 2151, 2183 |
| FauNDI | CATATG | 1 cut(s) | 1699 |
| FblI | GTMKAC | 1 cut(s) | 338 |
| FokI | GGATG | 8 cut(s) | 141, 347, 1355, 1364, 1517, 1751, 1885, 2267 |
| FriOI | GRGCYC | 3 cut(s) | 854, 1055, 1572 |
| FspAI | RTGCGCAY | 1 cut(s) | 1704 |
| FspBI | CTAG | 6 cut(s) | 279, 431, 837, 912, 1185, 1433 |
| FspI | TGCGCA | 1 cut(s) | 1704 |
| GlaI | GCGC | 3 cut(s) | 88, 301, 1704 |
| GsaI | CCCAGC | 2 cut(s) | 870, 1396 |
| HaeIII | GGCC | 3 cut(s) | 804, 1097, 1457 |
| HapII | CCGG | 3 cut(s) | 776, 1870, 2252 |
| HgaI | GACGC | 3 cut(s) | 68, 981, 1899 |
| HhaI | GCGC | 3 cut(s) | 89, 302, 1705 |
| Hin6I | GCGC | 3 cut(s) | 87, 300, 1703 |
| HinP1I | GCGC | 3 cut(s) | 87, 300, 1703 |
| HincII | GTYRAC | 1 cut(s) | 843 |
| HindII | GTYRAC | 1 cut(s) | 843 |
| HindIII | AAGCTT | 4 cut(s) | 150, 1416, 1956, 2058 |
| HinfI | GANTC | 5 cut(s) | 20, 232, 929, 1142, 1999 |
| HpaII | CCGG | 3 cut(s) | 776, 1870, 2252 |
| HphI | GGTGA | 3 cut(s) | 20, 523, 1473 |
| Hpy166II | GTNNAC | 4 cut(s) | 28, 339, 843, 1775 |
| Hpy188I | TCNGA | 8 cut(s) | 17, 103, 228, 1080, 1276, 1362, 1656, 1770 |
| Hpy188III | TCNNGA | 8 cut(s) | 41, 561, 639, 1202, 1643, 1721, 1870, 2099 |
| Hpy8I | GTNNAC | 4 cut(s) | 28, 339, 843, 1775 |
| HpyCH4III | ACNGT | 5 cut(s) | 495, 535, 859, 1490, 1519 |
| HpyF3I | CTNAG | 5 cut(s) | 812, 1044, 1588, 1596, 2041 |
| HspAI | GCGC | 3 cut(s) | 87, 300, 1703 |
| Kpn2I | TCCGGA | 1 cut(s) | 1869 |
| Kzo9I | GATC | 2 cut(s) | 1582, 1639 |
| LguI | GCTCTTC | 1 cut(s) | 411 |
| LmnI | GCTCC | 6 cut(s) | 772, 945, 1070, 1214, 1597, 2074 |
| LweI | GCATC | 4 cut(s) | 1333, 1487, 1777, 1870 |
| MaeI | CTAG | 6 cut(s) | 279, 431, 837, 912, 1185, 1433 |
| MaeIII | GTNAC | 4 cut(s) | 131, 1553, 2212, 2241 |
| MalI | GATC | 2 cut(s) | 1584, 1641 |
| MboI | GATC | 2 cut(s) | 1582, 1639 |
| MfeI | CAATTG | 3 cut(s) | 116, 599, 1227 |
| MhlI | GDGCHC | 4 cut(s) | 854, 1055, 1572, 1777 |
| MlyI | GAGTC | 1 cut(s) | 14 |
| MmeI | TCCRAC | 2 cut(s) | 1058, 1390 |
| Mph1103I | ATGCAT | 3 cut(s) | 1248, 1328, 2154 |
| MroI | TCCGGA | 1 cut(s) | 1869 |
| MroXI | GAANNNNTTC | 2 cut(s) | 907, 1661 |
| MseI | TTAA | 7 cut(s) | 173, 372, 1550, 1683, 2033, 2082, 2223 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1725 |
| MspA1I | CMGCKG | 2 cut(s) | 452, 1004 |
| MspI | CCGG | 3 cut(s) | 776, 1870, 2252 |
| MspR9I | CCNGG | 5 cut(s) | 1340, 1406, 1559, 1736, 1807 |
| MunI | CAATTG | 3 cut(s) | 116, 599, 1227 |
| MvaI | CCWGG | 5 cut(s) | 1340, 1406, 1559, 1736, 1807 |
| MvnI | CGCG | 1 cut(s) | 42 |
| NcoI | CCATGG | 2 cut(s) | 996, 1091 |
| NdeI | CATATG | 1 cut(s) | 1699 |
| NdeII | GATC | 2 cut(s) | 1582, 1639 |
| NlaIV | GGNNCC | 2 cut(s) | 291, 1337 |
| NmeAIII | GCCGAG | 1 cut(s) | 115 |
| NmuCI | GTSAC | 1 cut(s) | 2212 |
| NruI | TCGCGA | 1 cut(s) | 42 |
| NsbI | TGCGCA | 1 cut(s) | 1704 |
| NsiI | ATGCAT | 3 cut(s) | 1248, 1328, 2154 |
| NspI | RCATGY | 5 cut(s) | 1250, 1330, 1937, 2117, 2152 |
| NspV | TTCGAA | 1 cut(s) | 901 |
| PaeI | GCATGC | 3 cut(s) | 1250, 1937, 2117 |
| PagI | TCATGA | 2 cut(s) | 1642, 1720 |
| PciSI | GCTCTTC | 1 cut(s) | 411 |
| PdmI | GAANNNNTTC | 2 cut(s) | 907, 1661 |
| PfeI | GAWTC | 4 cut(s) | 232, 929, 1142, 1999 |
| PleI | GAGTC | 1 cut(s) | 14 |
| PpsI | GAGTC | 1 cut(s) | 14 |
| PshBI | ATTAAT | 1 cut(s) | 2033 |
| PsiI | TTATAA | 2 cut(s) | 1800, 2136 |
| Psp124BI | GAGCTC | 2 cut(s) | 854, 1572 |
| Psp6I | CCWGG | 5 cut(s) | 1338, 1404, 1557, 1734, 1805 |
| PspFI | CCCAGC | 2 cut(s) | 866, 1392 |
| PspGI | CCWGG | 5 cut(s) | 1338, 1404, 1557, 1734, 1805 |
| PspN4I | GGNNCC | 2 cut(s) | 291, 1337 |
| PspPI | GGNCC | 2 cut(s) | 1095, 1455 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1006, 1038 |
| PvuII | CAGCTG | 2 cut(s) | 452, 1004 |
| RruI | TCGCGA | 1 cut(s) | 42 |
| RsaI | GTAC | 5 cut(s) | 497, 823, 1331, 1398, 2250 |
| RsaNI | GTAC | 5 cut(s) | 496, 822, 1330, 1397, 2249 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1725 |
| SacI | GAGCTC | 2 cut(s) | 854, 1572 |
| SapI | GCTCTTC | 1 cut(s) | 411 |
| SaqAI | TTAA | 7 cut(s) | 173, 372, 1550, 1683, 2033, 2082, 2223 |
| Sau3AI | GATC | 2 cut(s) | 1582, 1639 |
| Sau96I | GGNCC | 2 cut(s) | 1095, 1455 |
| SchI | GAGTC | 1 cut(s) | 14 |
| ScrFI | CCNGG | 5 cut(s) | 1340, 1406, 1559, 1736, 1807 |
| SduI | GDGCHC | 4 cut(s) | 854, 1055, 1572, 1777 |
| SfaNI | GCATC | 4 cut(s) | 1333, 1487, 1777, 1870 |
| SfcI | CTRYAG | 4 cut(s) | 387, 1056, 1515, 1624 |
| SfuI | TTCGAA | 1 cut(s) | 901 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1725 |
| SpeI | ACTAGT | 1 cut(s) | 1184 |
| SphI | GCATGC | 3 cut(s) | 1250, 1937, 2117 |
| SsiI | CCGC | 5 cut(s) | 55, 159, 773, 1266, 2140 |
| SspI | AATATT | 2 cut(s) | 1281, 2090 |
| SspMI | CTAG | 6 cut(s) | 279, 431, 837, 912, 1185, 1433 |
| SstI | GAGCTC | 2 cut(s) | 854, 1572 |
| StyD4I | CCNGG | 5 cut(s) | 1338, 1404, 1557, 1734, 1805 |
| StyI | CCWWGG | 3 cut(s) | 836, 996, 1091 |
| TaaI | ACNGT | 5 cut(s) | 495, 535, 859, 1490, 1519 |
| TaqI | TCGA | 4 cut(s) | 901, 1137, 1471, 1780 |
| TatI | WGTACW | 1 cut(s) | 1329 |
| TauI | GCSGC | 2 cut(s) | 161, 2143 |
| TfiI | GAWTC | 4 cut(s) | 232, 929, 1142, 1999 |
| Tru1I | TTAA | 7 cut(s) | 173, 372, 1550, 1683, 2033, 2082, 2223 |
| Tru9I | TTAA | 7 cut(s) | 173, 372, 1550, 1683, 2033, 2082, 2223 |
| TscAI | CASTG | 2 cut(s) | 1353, 2221 |
| TseFI | GTSAC | 1 cut(s) | 2212 |
| Tsp45I | GTSAC | 1 cut(s) | 2212 |
| TspGWI | ACGGA | 2 cut(s) | 13, 1138 |
| TspRI | CASTG | 2 cut(s) | 1353, 2221 |
| VneI | GTGCAC | 1 cut(s) | 1773 |
| VspI | ATTAAT | 1 cut(s) | 2033 |
| XapI | RAATTY | 4 cut(s) | 109, 643, 1660, 1691 |
| XceI | RCATGY | 5 cut(s) | 1250, 1330, 1937, 2117, 2152 |
| XmaJI | CCTAGG | 1 cut(s) | 836 |
| XmiI | GTMKAC | 1 cut(s) | 338 |
| XmnI | GAANNNNTTC | 2 cut(s) | 907, 1661 |
| XspI | CTAG | 6 cut(s) | 279, 431, 837, 912, 1185, 1433 |
| Zsp2I | ATGCAT | 3 cut(s) | 1248, 1328, 2154 |