Prupe.7G186900_v2.0.a1

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0001423
Physical Location & Seq
Reverse (-)
18050245 .. 18053772
3528 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G186900.1

Sequence Viewer

Length: 876 bp
ATGGCTTACCAACAACAACACCCCCACCACCCCCACCATCTTCATCAGCAACAGCAGCAGCAAGGAGGGGCTCAGCTGTTCAATTCCCCATTCGGGGACACGACGTTGACGAAGGTGTTTGTGGGTGGGCTGGCCTGGGAAACCCAAAGCGACACTCTACGACGTCACTTTGAGCAGTTCGGCGACATCCTCGAGGCCGTCGTGATCACCGATAAGAACACCGCTCGATCCAAAGGCTATGGCTTTGTCACATTTCGTGATCCTGATTCTGCAAGAAGGGCTTGTGCGGACCCCAACCCTGTGATTGATGGCCGCAGAGCTAACTGTAATCTTGCTTCTCTGGGTCGGCCTCGACCTTCTTTCCCATTTCATGGGCAACTGAGATCAGCAGCTCCAATCCTTGGTCGTGTGCAGACACCTAGAGCTGCTTACATGGGGAGCCCAAACCCTGCTTACCACCACCCTCTTCCTCATGGTTACCAGCCTGGATTTGTATACCCTTCCTATGGGTACACAGCATATGGACCTGAGTATGTCTACCCACAGGGTGCCTACAGTCCTTACATGAATCAGCAATACCTTCAGATATATGGGGTACCGGGCACAGTAAACCCTGGCGCATATCCATACGGACAATTGGGTCATTCTCTCTCAGGCACTCATGGCTATGCAGCGGTTCAAAGCTATGGAGTTCCAGGCCATCATATAATGCAATTTGGCGGCTCCAATGTCAGTGGAGCATCCCCAGCTTCCATCCCCACAATTCAAACACCATATCCTACAGGTTTAGCTGCACCAGCTCCAGGACAGGCGCAACTTATACTTCCTACTAATTCTCCTCAATTCACCAGTGGTTCCGATCAAACTGCCAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

292

Amino Acids

31.48

Weight (kDa)

8.77

Isoelectric Point (pI)

52.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 639
AatII GACGTC 1 cut(s) 166
AbsI CCTCGAGG 1 cut(s) 191
Acc65I GGTACC 1 cut(s) 595
AccB1I GGYRCC 2 cut(s) 548, 595
AccB7I CCANNNNNTGG 2 cut(s) 371, 401
AccBSI CCGCTC 1 cut(s) 224
AccI GTMKAC 2 cut(s) 495, 537
AciI CCGC 5 cut(s) 222, 287, 313, 674, 720
AclWI GGATC 2 cut(s) 222, 254
AcoI YGGCCR 1 cut(s) 310
AcuI CTGAAG 1 cut(s) 566
AcyI GRCGYC 1 cut(s) 163
AdeI CACNNNGTG 1 cut(s) 548
AfaI GTAC 2 cut(s) 512, 597
AfiI CCNNNNNNNGG 6 cut(s) 93, 94, 371, 401, 506, 803
AgsI TTSAA 3 cut(s) 82, 680, 767
AjnI CCWGG 5 cut(s) 134, 484, 613, 694, 802
AluBI AGCT 8 cut(s) 76, 320, 392, 425, 684, 749, 791, 800
AluI AGCT 8 cut(s) 76, 320, 392, 425, 684, 749, 791, 800
AlwI GGATC 2 cut(s) 222, 254
Ama87I CYCGRG 1 cut(s) 191
AoxI GGCC 5 cut(s) 132, 195, 310, 347, 697
ApeKI GCWGC 6 cut(s) 55, 58, 389, 425, 671, 791
Asp718I GGTACC 1 cut(s) 595
AspLEI GCGC 2 cut(s) 620, 814
AspS9I GGNCC 2 cut(s) 289, 524
AsuC2I CCSGG 1 cut(s) 600
AsuHPI GGTGA 2 cut(s) 199, 838
AvaI CYCGRG 1 cut(s) 191
AvaII GGWCC 2 cut(s) 289, 524
BaeGI GKGCMC 1 cut(s) 605
BanI GGYRCC 2 cut(s) 548, 595
BanII GRGCYC 2 cut(s) 73, 443
BarI GAAGNNNNNNTAC 2 cut(s) 319, 351
BbvI GCAGC 6 cut(s) 67, 70, 401, 412, 683, 778
BccI CCATC 4 cut(s) 45, 302, 708, 761
BceAI ACGGC 1 cut(s) 182
BcgI CGANNNNNNTGC 1 cut(s) 848
BciT130I CCWGG 5 cut(s) 136, 486, 615, 696, 804
BclI TGATCA 1 cut(s) 204
BcnI CCSGG 1 cut(s) 600
BfaI CTAG 1 cut(s) 420
BfmI CTRYAG 2 cut(s) 553, 780
BisI GCNGC 8 cut(s) 56, 59, 313, 390, 426, 672, 721, 792
BlpI GCTNAGC 1 cut(s) 72
BlsI GCNGC 8 cut(s) 57, 60, 314, 391, 427, 673, 722, 793
Bme1390I CCNGG 6 cut(s) 136, 486, 600, 615, 696, 804
Bme18I GGWCC 2 cut(s) 289, 524
BmeT110I CYCGRG 1 cut(s) 191
BmgT120I GGNCC 2 cut(s) 289, 524
BmiI GGNNCC 6 cut(s) 291, 440, 550, 597, 724, 856
BmrFI CCNGG 6 cut(s) 136, 486, 600, 615, 696, 804
BmsI GCATC 1 cut(s) 749
BpmI CTGGAG 1 cut(s) 786
Bpu1102I GCTNAGC 1 cut(s) 72
BpuMI CCSGG 1 cut(s) 600
BsaHI GRCGYC 1 cut(s) 163
BsaJI CCNNGG 3 cut(s) 135, 400, 613
BsaXI ACNNNNNCTCC 2 cut(s) 820, 850
Bsc4I CCNNNNNNNGG 6 cut(s) 93, 94, 371, 401, 506, 803
Bse1I ACTGG 2 cut(s) 849, 870
BseBI CCWGG 5 cut(s) 136, 486, 615, 696, 804
BseDI CCNNGG 3 cut(s) 135, 400, 613
BseGI GGATG 3 cut(s) 186, 740, 753
BseLI CCNNNNNNNGG 6 cut(s) 93, 94, 371, 401, 506, 803
BseMII CTCAG 4 cut(s) 86, 371, 519, 666
BseNI ACTGG 2 cut(s) 849, 870
BseRI GAGGAG 1 cut(s) 828
BseSI GKGCMC 1 cut(s) 605
BseXI GCAGC 6 cut(s) 67, 70, 401, 412, 683, 778
BseYI CCCAGC 1 cut(s) 745
BsgI GTGCAG 2 cut(s) 431, 777
BshFI GGCC 5 cut(s) 134, 197, 312, 349, 699
BshNI GGYRCC 2 cut(s) 548, 595
BsiHKCI CYCGRG 1 cut(s) 191
BsiSI CCGG 1 cut(s) 599
BslFI GGGAC 1 cut(s) 110
BslI CCNNNNNNNGG 6 cut(s) 93, 94, 371, 401, 506, 803
BsmFI GGGAC 1 cut(s) 110
BsnI GGCC 5 cut(s) 134, 197, 312, 349, 699
BsoBI CYCGRG 1 cut(s) 191
Bsp1286I GDGCHC 3 cut(s) 73, 443, 605
Bsp143I GATC 5 cut(s) 204, 227, 259, 383, 859
Bsp1720I GCTNAGC 1 cut(s) 72
BspACI CCGC 5 cut(s) 222, 287, 313, 674, 720
BspANI GGCC 5 cut(s) 134, 197, 312, 349, 699
BspCNI CTCAG 4 cut(s) 85, 372, 520, 665
BspLI GGNNCC 6 cut(s) 291, 440, 550, 597, 724, 856
BspPI GGATC 2 cut(s) 222, 254
BspT107I GGYRCC 2 cut(s) 548, 595
BsrBI CCGCTC 1 cut(s) 224
BsrI ACTGG 2 cut(s) 849, 870
BssECI CCNNGG 3 cut(s) 135, 400, 613
BssMI GATC 5 cut(s) 204, 227, 259, 383, 859
BssNAI GTATAC 1 cut(s) 496
BssNI GRCGYC 1 cut(s) 163
BssT1I CCWWGG 1 cut(s) 400
Bst1107I GTATAC 1 cut(s) 496
Bst2UI CCWGG 5 cut(s) 136, 486, 615, 696, 804
Bst4CI ACNGT 3 cut(s) 326, 557, 607
Bst6I CTCTTC 1 cut(s) 471
BstACI GRCGYC 1 cut(s) 163
BstC8I GCNNGC 1 cut(s) 132
BstDEI CTNAG 4 cut(s) 72, 380, 528, 652
BstEII GGTNACC 1 cut(s) 476
BstF5I GGATG 3 cut(s) 186, 740, 753
BstHHI GCGC 2 cut(s) 620, 814
BstKTI GATC 5 cut(s) 207, 230, 262, 386, 862
BstMBI GATC 5 cut(s) 204, 227, 259, 383, 859
BstMWI GCNNNNNNNGC 5 cut(s) 55, 278, 663, 746, 797
BstNI CCWGG 5 cut(s) 136, 486, 615, 696, 804
BstPI GGTNACC 1 cut(s) 476
BstSCI CCNGG 6 cut(s) 134, 484, 598, 613, 694, 802
BstSFI CTRYAG 2 cut(s) 553, 780
BstSLI GKGCMC 1 cut(s) 605
BstV1I GCAGC 6 cut(s) 67, 70, 401, 412, 683, 778
BstZ17I GTATAC 1 cut(s) 496
BsuRI GGCC 5 cut(s) 134, 197, 312, 349, 699
BtsCI GGATG 3 cut(s) 186, 740, 753
BtsIMutI CAGTG 2 cut(s) 739, 856
Cac8I GCNNGC 1 cut(s) 132
CfoI GCGC 2 cut(s) 620, 814
Cfr13I GGNCC 2 cut(s) 289, 524
Csp6I GTAC 2 cut(s) 511, 596
CspCI CAANNNNNGTGG 2 cut(s) 715, 750
CviAII CATG 5 cut(s) 371, 433, 473, 565, 662
CviQI GTAC 2 cut(s) 511, 596
DdeI CTNAG 4 cut(s) 72, 380, 528, 652
DpnI GATC 5 cut(s) 206, 229, 261, 385, 861
DpnII GATC 5 cut(s) 204, 227, 259, 383, 859
DraIII CACNNNGTG 1 cut(s) 548
DrdI GACNNNNNNGTC 1 cut(s) 639
DseDI GACNNNNNNGTC 1 cut(s) 639
EaeI YGGCCR 1 cut(s) 310
Eam1104I CTCTTC 1 cut(s) 471
EarI CTCTTC 1 cut(s) 471
Eco130I CCWWGG 1 cut(s) 400
Eco24I GRGCYC 2 cut(s) 73, 443
Eco47I GGWCC 2 cut(s) 289, 524
Eco57I CTGAAG 1 cut(s) 566
Eco88I CYCGRG 1 cut(s) 191
Eco91I GGTNACC 1 cut(s) 476
EcoO65I GGTNACC 1 cut(s) 476
EcoRII CCWGG 5 cut(s) 134, 484, 613, 694, 802
EcoT14I CCWWGG 1 cut(s) 400
EcoT38I GRGCYC 2 cut(s) 73, 443
ErhI CCWWGG 1 cut(s) 400
FaeI CATG 5 cut(s) 374, 436, 476, 568, 665
FalI AAGNNNNNCTT 2 cut(s) 265, 297
FaqI GGGAC 1 cut(s) 110
FatI CATG 5 cut(s) 370, 432, 472, 564, 661
FauNDI CATATG 1 cut(s) 520
FbaI TGATCA 1 cut(s) 204
FblI GTMKAC 2 cut(s) 495, 537
Fnu4HI GCNGC 8 cut(s) 56, 59, 313, 390, 426, 672, 721, 792
FokI GGATG 3 cut(s) 173, 727, 740
FriOI GRGCYC 2 cut(s) 73, 443
Fsp4HI GCNGC 8 cut(s) 56, 59, 313, 390, 426, 672, 721, 792
FspBI CTAG 1 cut(s) 420
GlaI GCGC 2 cut(s) 619, 813
GluI GCNGC 8 cut(s) 56, 59, 313, 390, 426, 672, 721, 792
GsaI CCCAGC 1 cut(s) 749
GsuI CTGGAG 1 cut(s) 786
HaeIII GGCC 5 cut(s) 134, 197, 312, 349, 699
HapII CCGG 1 cut(s) 599
HhaI GCGC 2 cut(s) 620, 814
Hin1I GRCGYC 1 cut(s) 163
Hin1II CATG 5 cut(s) 374, 436, 476, 568, 665
Hin6I GCGC 2 cut(s) 618, 812
HinP1I GCGC 2 cut(s) 618, 812
HincII GTYRAC 1 cut(s) 108
HindII GTYRAC 1 cut(s) 108
HinfI GANTC 2 cut(s) 266, 568
HpaII CCGG 1 cut(s) 599
HphI GGTGA 2 cut(s) 199, 838
Hpy166II GTNNAC 5 cut(s) 108, 496, 513, 538, 610
Hpy188I TCNGA 2 cut(s) 585, 859
Hpy188III TCNNGA 3 cut(s) 202, 257, 263
Hpy8I GTNNAC 5 cut(s) 108, 496, 513, 538, 610
Hpy99I CGWCG 3 cut(s) 106, 165, 203
HpyAV CCTTC 5 cut(s) 106, 270, 366, 510, 590
HpyCH4III ACNGT 3 cut(s) 326, 557, 607
HpyCH4IV ACGT 2 cut(s) 104, 163
HpyCH4V TGCA 5 cut(s) 272, 412, 671, 712, 794
HpyF10VI GCNNNNNNNGC 5 cut(s) 55, 278, 663, 746, 797
HpyF3I CTNAG 4 cut(s) 72, 380, 528, 652
HpySE526I ACGT 2 cut(s) 104, 163
Hsp92I GRCGYC 1 cut(s) 163
Hsp92II CATG 5 cut(s) 374, 436, 476, 568, 665
HspAI GCGC 2 cut(s) 618, 812
KpnI GGTACC 1 cut(s) 599
Ksp22I TGATCA 1 cut(s) 204
Kzo9I GATC 5 cut(s) 204, 227, 259, 383, 859
LmnI GCTCC 5 cut(s) 397, 438, 728, 737, 805
Lsp1109I GCAGC 6 cut(s) 67, 70, 401, 412, 683, 778
LweI GCATC 1 cut(s) 749
MaeI CTAG 1 cut(s) 420
MaeII ACGT 2 cut(s) 104, 163
MaeIII GTNAC 3 cut(s) 164, 247, 476
MalI GATC 5 cut(s) 206, 229, 261, 385, 861
MbiI CCGCTC 1 cut(s) 224
MboI GATC 5 cut(s) 204, 227, 259, 383, 859
MboII GAAGA 2 cut(s) 32, 458
MfeI CAATTG 1 cut(s) 635
MhlI GDGCHC 3 cut(s) 73, 443, 605
MluCI AATT 6 cut(s) 82, 635, 713, 762, 832, 842
MnlI CCTC 7 cut(s) 59, 187, 200, 360, 474, 480, 849
MslI CAYNNNNRTG 1 cut(s) 666
MspA1I CMGCKG 2 cut(s) 76, 674
MspI CCGG 1 cut(s) 599
MspR9I CCNGG 6 cut(s) 136, 486, 600, 615, 696, 804
MunI CAATTG 1 cut(s) 635
MvaI CCWGG 5 cut(s) 136, 486, 615, 696, 804
MwoI GCNNNNNNNGC 5 cut(s) 55, 278, 663, 746, 797
NciI CCSGG 1 cut(s) 600
NdeI CATATG 1 cut(s) 520
NdeII GATC 5 cut(s) 204, 227, 259, 383, 859
NlaIII CATG 5 cut(s) 374, 436, 476, 568, 665
NlaIV GGNNCC 6 cut(s) 291, 440, 550, 597, 724, 856
NmuCI GTSAC 2 cut(s) 164, 247
PaeR7I CTCGAG 1 cut(s) 191
PcsI WCGNNNNNNNCGW 3 cut(s) 107, 198, 207
PfeI GAWTC 2 cut(s) 266, 568
PflMI CCANNNNNTGG 2 cut(s) 371, 401
PfoI TCCNGGA 1 cut(s) 802
PkrI GCNGC 8 cut(s) 57, 60, 314, 391, 427, 673, 722, 793
Psp6I CCWGG 5 cut(s) 134, 484, 613, 694, 802
PspEI GGTNACC 1 cut(s) 476
PspFI CCCAGC 1 cut(s) 745
PspGI CCWGG 5 cut(s) 134, 484, 613, 694, 802
PspN4I GGNNCC 6 cut(s) 291, 440, 550, 597, 724, 856
PspPI GGNCC 2 cut(s) 289, 524
PspXI VCTCGAGB 1 cut(s) 191
PvuII CAGCTG 1 cut(s) 76
RsaI GTAC 2 cut(s) 512, 597
RsaNI GTAC 2 cut(s) 511, 596
RseI CAYNNNNRTG 1 cut(s) 666
SatI GCNGC 8 cut(s) 56, 59, 313, 390, 426, 672, 721, 792
Sau3AI GATC 5 cut(s) 204, 227, 259, 383, 859
Sau96I GGNCC 2 cut(s) 289, 524
ScrFI CCNGG 6 cut(s) 136, 486, 600, 615, 696, 804
SduI GDGCHC 3 cut(s) 73, 443, 605
SfaNI GCATC 1 cut(s) 749
SfcI CTRYAG 2 cut(s) 553, 780
Sfr274I CTCGAG 1 cut(s) 191
SinI GGWCC 2 cut(s) 289, 524
SlaI CTCGAG 1 cut(s) 191
SmiMI CAYNNNNRTG 1 cut(s) 666
SmlI CTYRAG 1 cut(s) 191
SmoI CTYRAG 1 cut(s) 191
Sse9I AATT 6 cut(s) 82, 635, 713, 762, 832, 842
SsiI CCGC 5 cut(s) 222, 287, 313, 674, 720
SspMI CTAG 1 cut(s) 420
StyD4I CCNGG 6 cut(s) 134, 484, 598, 613, 694, 802
StyI CCWWGG 1 cut(s) 400
TaaI ACNGT 3 cut(s) 326, 557, 607
TaiI ACGT 2 cut(s) 107, 166
TaqI TCGA 3 cut(s) 192, 226, 352
TasI AATT 6 cut(s) 82, 635, 713, 762, 832, 842
TauI GCSGC 2 cut(s) 315, 723
TfiI GAWTC 2 cut(s) 266, 568
TscAI CASTG 2 cut(s) 739, 856
TseFI GTSAC 2 cut(s) 164, 247
TseI GCWGC 6 cut(s) 55, 58, 389, 425, 671, 791
Tsp45I GTSAC 2 cut(s) 164, 247
TspDTI ATGAA 3 cut(s) 32, 359, 581
TspGWI ACGGA 1 cut(s) 645
TspRI CASTG 2 cut(s) 739, 856
Van91I CCANNNNNTGG 2 cut(s) 371, 401
VpaK11BI GGWCC 2 cut(s) 289, 524
XhoI CTCGAG 1 cut(s) 191
XmiI GTMKAC 2 cut(s) 495, 537
XspI CTAG 1 cut(s) 420
ZraI GACGTC 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.